Rh7BG454400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012941
Physical Location & Seq
Reverse (-)
53538595 .. 53540298
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG454400.1

Sequence Viewer

Length: 702 bp
ATGAAGGCAAGAGATGCCAAAGGAGGTCTTTCTGCAGATTTACTGGTATGTTTTCCTTCAAGAACCAATTTAACCCTTATGCCAAAATCCATTTGCAGCCCAGCAAGGTCCTTAGAAGCCAAAAAGCACCACAACAATCACAACCAGCAGCTCATCAAGAGAGGTAGAACCAAAAGCTTTGGCCAGGCCAGTCCTATGTTATGGGCCAAAACCAAGGCAATGGGCTCGGAGATCTCTGAGCCCACGTCGCCAAAAGTCACATGTGCCGGACAGATCAAGGTTCGGCACAAGACTGGCTCGATCAAAAGCTGGCAAACAGTGATGGAGGAGATTGAGAGGATTCACAAGAATAAAAAGCAAAAGAAGCCGAAACCGAACTGGGCGGAGGCACTCGGGTTCAAGAAAGATAGCTGCCATTCGGTCAGACTTGTATCACATAAACTCAGCAGCACTGAGCACAACTGCAAAGAGGGGCTTCTAAATTCTCTAAAGAAGCTCTTTCCTTTTGTATTTAACTATTTATGCCGAGAAAGCTGCTCCTTTCGCGAAACAGAGTGTAGAGCAAAAAGACTTAATACACCACGACATAGCTCTCGTTCGTTTCACAAGCTCGCTATCACAAACCTTGTCTTTAGGTGCGGAGAGAAGAAGGCGCTGTTGAAACTGAAATATCGCAACTGTATTAACTGGAAGGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.65

Weight (kDa)

10.13

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 546
AciI CCGC 2 cut(s) 383, 639
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 3 cut(s) 60, 400, 661
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 8 cut(s) 151, 177, 309, 411, 496, 534, 591, 610
AluI AGCT 8 cut(s) 151, 177, 309, 411, 496, 534, 591, 610
Alw21I GWGCWC 1 cut(s) 459
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 3 cut(s) 181, 186, 204
ApeKI GCWGC 5 cut(s) 96, 148, 411, 447, 534
ApoI RAATTY 1 cut(s) 481
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 108, 204
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 183
BanII GRGCYC 2 cut(s) 227, 243
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 5 cut(s) 108, 160, 398, 459, 521
BccI CCATC 1 cut(s) 316
BcgI CGANNNNNNTGC 4 cut(s) 207, 241, 516, 550
BciT130I CCWGG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 656
BglII AGATCT 1 cut(s) 231
BisI GCNGC 5 cut(s) 97, 149, 412, 448, 535
BlsI GCNGC 5 cut(s) 98, 150, 413, 449, 536
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 108, 204
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 213
Bse1I ACTGG 5 cut(s) 48, 189, 298, 383, 692
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 700
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 228, 444, 457
BseNI ACTGG 5 cut(s) 48, 189, 298, 383, 692
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 5 cut(s) 108, 160, 398, 459, 521
BseYI CCCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 3 cut(s) 183, 188, 206
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 267
BsnI GGCC 3 cut(s) 183, 188, 206
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 3 cut(s) 227, 243, 459
Bsp143I GATC 3 cut(s) 231, 273, 300
Bsp68I TCGCGA 1 cut(s) 546
BspACI CCGC 2 cut(s) 383, 639
BspANI GGCC 3 cut(s) 183, 188, 206
BspCNI CTCAG 3 cut(s) 229, 445, 456
BspFNI CGCG 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 5 cut(s) 48, 189, 298, 383, 692
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 3 cut(s) 231, 273, 300
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 319, 680
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 311, 612
BstDEI CTNAG 4 cut(s) 112, 237, 443, 453
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 546
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 3 cut(s) 234, 276, 303
BstMBI GATC 3 cut(s) 231, 273, 300
BstMWI GCNNNNNNNGC 5 cut(s) 14, 247, 364, 531, 543
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 33
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 5 cut(s) 108, 160, 398, 459, 521
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 3 cut(s) 183, 188, 206
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 700
BtsIMutI CAGTG 2 cut(s) 324, 450
BtuMI TCGCGA 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 311, 612
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 2 cut(s) 108, 204
CviAII CATG 1 cut(s) 261
DdeI CTNAG 4 cut(s) 112, 237, 443, 453
DpnI GATC 3 cut(s) 233, 275, 302
DpnII GATC 3 cut(s) 231, 273, 300
EaeI YGGCCR 1 cut(s) 181
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 2 cut(s) 227, 243
Eco47I GGWCC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 227, 243
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 264
FaiI YATR 8 cut(s) 49, 80, 197, 202, 262, 438, 523, 588
FalI AAGNNNNNCTT 6 cut(s) 12, 44, 459, 491, 482, 514
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 5 cut(s) 97, 149, 412, 448, 535
FriOI GRGCYC 2 cut(s) 227, 243
Fsp4HI GCNGC 5 cut(s) 97, 149, 412, 448, 535
GlaI GCGC 1 cut(s) 654
GluI GCNGC 5 cut(s) 97, 149, 412, 448, 535
GsaI CCCAGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 656
HaeIII GGCC 3 cut(s) 183, 188, 206
HapII CCGG 1 cut(s) 267
HhaI GCGC 1 cut(s) 655
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 1 cut(s) 340
HpaII CCGG 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 229, 238, 425
Hpy188III TCNNGA 4 cut(s) 60, 157, 400, 545
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 66, 643, 685
HpyCH4III ACNGT 2 cut(s) 319, 680
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 35, 96, 465
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 247, 364, 531, 543
HpyF3I CTNAG 4 cut(s) 112, 237, 443, 453
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 1 cut(s) 653
Kzo9I GATC 3 cut(s) 231, 273, 300
LmnI GCTCC 1 cut(s) 542
Lsp1109I GCAGC 5 cut(s) 108, 160, 398, 459, 521
LweI GCATC 1 cut(s) 4
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 256
MalI GATC 3 cut(s) 233, 275, 302
MboI GATC 3 cut(s) 231, 273, 300
MboII GAAGA 1 cut(s) 658
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 3 cut(s) 227, 243, 459
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 2 cut(s) 67, 481
MluNI TGGCCA 1 cut(s) 183
MnlI CCTC 6 cut(s) 17, 155, 319, 330, 379, 463
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 4 cut(s) 71, 513, 573, 684
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 5 cut(s) 14, 247, 364, 531, 543
NdeII GATC 3 cut(s) 231, 273, 300
NlaIII CATG 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 546
NspI RCATGY 1 cut(s) 264
PciI ACATGT 1 cut(s) 260
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 5 cut(s) 98, 150, 413, 449, 536
PpuMI RGGWCCY 1 cut(s) 108
PscI ACATGT 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 183
PspPI GGNCC 2 cut(s) 108, 204
PspPPI RGGWCCY 1 cut(s) 108
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 231
RruI TCGCGA 1 cut(s) 546
SaqAI TTAA 4 cut(s) 71, 513, 573, 684
SatI GCNGC 5 cut(s) 97, 149, 412, 448, 535
Sau3AI GATC 3 cut(s) 231, 273, 300
Sau96I GGNCC 2 cut(s) 108, 204
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 3 cut(s) 227, 243, 459
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 108
Sse9I AATT 2 cut(s) 67, 481
SsiI CCGC 2 cut(s) 383, 639
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 319, 680
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 299
TaqII GACCGA 1 cut(s) 409
TasI AATT 2 cut(s) 67, 481
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 4 cut(s) 71, 513, 573, 684
Tru9I TTAA 4 cut(s) 71, 513, 573, 684
TscAI CASTG 2 cut(s) 324, 457
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 5 cut(s) 96, 148, 411, 447, 534
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 324, 457
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 481
XceI RCATGY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.