Rroxscaffold_3G00220920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012941
Physical Location & Seq
Forward (+)
3531325 .. 3532410
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220920.1

Sequence Viewer

Length: 1086 bp
ATGAAGGCAAGAGATGCCAAAGGAGGTCTTTCTGCAGATTTACTGGTATGTTTTCCTTCAAGAACCAATTTAACCCTTATGCCAAAATCCATTTGCAGCCCGGCAAGGACCTTAGAAGCCAAAAAGCACCACAACAATCACAACCAGCAGCTCATCAAGAGAGGTAGAACCAAAAGCTTCGGCCAGGCCAGTCCTATGTTATGGGCCAAAACCAAGGCAATGGGCTCGGAGATCTCTGAGCCCACGTCGCCAAAAGTCACATGTGCCGGACAGATCAAGGTTCGGCACAAGACTGGCTCGATCAAAAGCTGGCAAACAGTGATGGAGGAGATTGAGAGGATTCACAGGAATAAAAAGCAAAAGAAGCCGAAACCGAACTGGGCGGAGGCACTCGGGTTCAAGAAAGATGTAATGCACTTCCTAACTTGCTTGCGAAGAATCCGATTCGACTTTCGGTGTTTTGGGTCCTTCCCTCAACCAGATATCACTTCTGACGATGAAGACGATGAAGAAGAAGAGGAAGACAGAGAAGAAAACCATGTGGGTACTGTTGAAGGAAGTGAAGGTACTGACGAAAATTCCAGAACGGTCTTTTCGAAATGGTATATGGTTTTACAGGAAAATCAGAGTGATGGTTTTTCCAAACAAGATGGAATTGGGATAGATGATAGGCCTAGTTTCGATGATGACGGATCGACTTCTGCAGTACCCTCAGTTCCACCACCAAATGCTCTGCTGCTAATGAGGTGCAGGTCTGCTCCTGCAAAGAGCTTGTTAGAAGAGAAAGAAGAAGAAAAAAATTATCATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAACAAGAAAAAGAAGAATGCCAGGAAGAAAATGTATCAGAAAAACAAGAGAGAAAAGGCAAAATTACTTTGAAGAGTTTAATGGATGAAGAGAAGATGAAGAAGAAGAAGAATGAGAACCTGGTGGTGATGACATACGGTTCTGATTTGTACAACATTTCAACTGAAATTGCCAAGGAGACATGGGTTGTGGGTGGAATCACTGGAATGAAAGATCCAATTTCGAGGAGTCGAAGTTGGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

41.29

Weight (kDa)

5.63

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 741
AciI CCGC 1 cut(s) 383
AclWI GGATC 2 cut(s) 700, 1046
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 4 cut(s) 547, 568, 708, 989
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 5 cut(s) 60, 400, 554, 910, 999
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 3 cut(s) 183, 858, 957
AluBI AGCT 4 cut(s) 151, 177, 309, 771
AluI AGCT 4 cut(s) 151, 177, 309, 771
Alw26I GTCTC 1 cut(s) 1010
AlwI GGATC 2 cut(s) 700, 1046
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 4 cut(s) 181, 186, 204, 671
ApeKI GCWGC 3 cut(s) 96, 148, 736
ApoI RAATTY 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 108, 204, 465
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 976
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 108, 465
BanII GRGCYC 2 cut(s) 227, 243
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BbsI GAAGAC 2 cut(s) 507, 528
BbvI GCAGC 3 cut(s) 108, 160, 723
BccI CCATC 3 cut(s) 316, 626, 644
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 3 cut(s) 185, 860, 959
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 1010
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 2 cut(s) 33, 702
BfuAI ACCTGC 1 cut(s) 741
BglII AGATCT 1 cut(s) 231
BisI GCNGC 3 cut(s) 97, 149, 737
BlsI GCNGC 3 cut(s) 98, 150, 738
Bme1390I CCNGG 4 cut(s) 101, 185, 860, 959
Bme18I GGWCC 2 cut(s) 108, 465
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 3 cut(s) 108, 204, 465
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 4 cut(s) 101, 185, 860, 959
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 507, 528
Bpu14I TTCGAA 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 213, 1011
BsaXI ACNNNNNCTCC 1 cut(s) 1057
Bse1I ACTGG 5 cut(s) 48, 189, 298, 383, 1045
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 185, 860, 959
BseDI CCNNGG 2 cut(s) 213, 1011
BseGI GGATG 1 cut(s) 928
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 228, 726
BseNI ACTGG 5 cut(s) 48, 189, 298, 383, 1045
BseRI GAGGAG 2 cut(s) 341, 1078
BseXI GCAGC 3 cut(s) 108, 160, 723
BsgI GTGCAG 1 cut(s) 769
BshFI GGCC 4 cut(s) 183, 188, 206, 673
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 101, 267
BsmAI GTCTC 1 cut(s) 1010
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 4 cut(s) 183, 188, 206, 673
BsoBI CYCGRG 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 2 cut(s) 227, 243
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 5 cut(s) 231, 273, 300, 692, 1051
BspACI CCGC 1 cut(s) 383
BspANI GGCC 4 cut(s) 183, 188, 206, 673
BspCNI CTCAG 2 cut(s) 229, 725
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 2 cut(s) 37, 706
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 2 cut(s) 700, 1046
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 5 cut(s) 48, 189, 298, 383, 1045
BssECI CCNNGG 2 cut(s) 213, 1011
BssMI GATC 5 cut(s) 231, 273, 300, 692, 1051
BssT1I CCWWGG 2 cut(s) 213, 1011
Bst2UI CCWGG 3 cut(s) 185, 860, 959
Bst4CI ACNGT 4 cut(s) 319, 550, 589, 977
Bst6I CTCTTC 6 cut(s) 510, 774, 825, 905, 921, 1073
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 987
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 311, 431
BstDEI CTNAG 3 cut(s) 112, 237, 712
BstF5I GGATG 1 cut(s) 928
BstKTI GATC 5 cut(s) 234, 276, 303, 695, 1054
BstMAI GTCTC 1 cut(s) 1010
BstMBI GATC 5 cut(s) 231, 273, 300, 692, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 14, 247, 364
BstNI CCWGG 3 cut(s) 185, 860, 959
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 4 cut(s) 99, 183, 858, 957
BstSFI CTRYAG 2 cut(s) 33, 702
BstV1I GCAGC 3 cut(s) 108, 160, 723
BstV2I GAAGAC 2 cut(s) 507, 528
BstX2I RGATCY 2 cut(s) 231, 1051
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 231, 1051
BsuRI GGCC 4 cut(s) 183, 188, 206, 673
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 928
BtsIMutI CAGTG 2 cut(s) 324, 1038
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 311, 431
CciI TCATGA 1 cut(s) 805
Cfr13I GGNCC 3 cut(s) 108, 204, 465
CsiI ACCWGGT 1 cut(s) 957
Csp6I GTAC 4 cut(s) 546, 567, 707, 988
CviAII CATG 4 cut(s) 261, 539, 806, 1020
CviQI GTAC 4 cut(s) 546, 567, 707, 988
DdeI CTNAG 3 cut(s) 112, 237, 712
DpnI GATC 5 cut(s) 233, 275, 302, 694, 1053
DpnII GATC 5 cut(s) 231, 273, 300, 692, 1051
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 6 cut(s) 510, 774, 825, 905, 921, 1073
EarI CTCTTC 6 cut(s) 510, 774, 825, 905, 921, 1073
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 213, 1011
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 227, 243
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 108, 465
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 108, 465
EcoRII CCWGG 3 cut(s) 183, 858, 957
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 213, 1011
EcoT38I GRGCYC 2 cut(s) 227, 243
ErhI CCWWGG 2 cut(s) 213, 1011
FaeI CATG 4 cut(s) 264, 542, 809, 1023
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 4 cut(s) 260, 538, 805, 1019
Fnu4HI GCNGC 3 cut(s) 97, 149, 737
FokI GGATG 1 cut(s) 935
FriOI GRGCYC 2 cut(s) 227, 243
Fsp4HI GCNGC 3 cut(s) 97, 149, 737
FspBI CTAG 1 cut(s) 675
GluI GCNGC 3 cut(s) 97, 149, 737
HaeIII GGCC 4 cut(s) 183, 188, 206, 673
HapII CCGG 2 cut(s) 101, 267
Hin1II CATG 4 cut(s) 264, 542, 809, 1023
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 5 cut(s) 340, 438, 444, 1035, 1066
HpaII CCGG 2 cut(s) 101, 267
HphI GGTGA 1 cut(s) 976
Hpy188I TCNGA 7 cut(s) 229, 238, 443, 493, 627, 877, 982
Hpy188III TCNNGA 5 cut(s) 60, 157, 400, 582, 806
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 66, 478, 548, 557
HpyCH4III ACNGT 4 cut(s) 319, 550, 589, 977
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 6 cut(s) 35, 96, 415, 704, 750, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 247, 364
HpyF3I CTNAG 3 cut(s) 112, 237, 712
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 4 cut(s) 264, 542, 809, 1023
Kzo9I GATC 5 cut(s) 231, 273, 300, 692, 1051
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 3 cut(s) 108, 160, 723
LweI GCATC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 957
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 256
MalI GATC 5 cut(s) 233, 275, 302, 694, 1053
MboI GATC 5 cut(s) 231, 273, 300, 692, 1051
MflI RGATCY 2 cut(s) 231, 1051
MhlI GDGCHC 2 cut(s) 227, 243
MluCI AATT 7 cut(s) 67, 577, 654, 799, 900, 1005, 1056
MlyI GAGTC 1 cut(s) 1075
MmeI TCCRAC 1 cut(s) 1055
MseI TTAA 2 cut(s) 71, 917
MslI CAYNNNNRTG 1 cut(s) 1043
MspI CCGG 2 cut(s) 101, 267
MspR9I CCNGG 4 cut(s) 101, 185, 860, 959
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 3 cut(s) 185, 860, 959
MwoI GCNNNNNNNGC 3 cut(s) 14, 247, 364
NciI CCSGG 1 cut(s) 101
NdeII GATC 5 cut(s) 231, 273, 300, 692, 1051
NlaIII CATG 4 cut(s) 264, 542, 809, 1023
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 264
NspV TTCGAA 1 cut(s) 596
PagI TCATGA 1 cut(s) 805
PceI AGGCCT 1 cut(s) 673
PciI ACATGT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 2 cut(s) 501, 593
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 4 cut(s) 340, 438, 444, 1035
PkrI GCNGC 3 cut(s) 98, 150, 738
PleI GAGTC 1 cut(s) 1074
PpsI GAGTC 1 cut(s) 1074
PpuMI RGGWCCY 2 cut(s) 108, 465
PscI ACATGT 1 cut(s) 260
Psp5II RGGWCCY 2 cut(s) 108, 465
Psp6I CCWGG 3 cut(s) 183, 858, 957
PspGI CCWGG 3 cut(s) 183, 858, 957
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 3 cut(s) 108, 204, 465
PspPPI RGGWCCY 2 cut(s) 108, 465
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PstI CTGCAG 2 cut(s) 37, 706
PsuI RGATCY 2 cut(s) 231, 1051
RsaI GTAC 4 cut(s) 547, 568, 708, 989
RsaNI GTAC 4 cut(s) 546, 567, 707, 988
RseI CAYNNNNRTG 1 cut(s) 1043
SaqAI TTAA 2 cut(s) 71, 917
SatI GCNGC 3 cut(s) 97, 149, 737
Sau3AI GATC 5 cut(s) 231, 273, 300, 692, 1051
Sau96I GGNCC 3 cut(s) 108, 204, 465
SchI GAGTC 1 cut(s) 1075
ScrFI CCNGG 4 cut(s) 101, 185, 860, 959
SduI GDGCHC 2 cut(s) 227, 243
SexAI ACCWGGT 1 cut(s) 957
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 2 cut(s) 33, 702
SfuI TTCGAA 1 cut(s) 596
SinI GGWCC 2 cut(s) 108, 465
SmiMI CAYNNNNRTG 1 cut(s) 1043
Sse9I AATT 7 cut(s) 67, 577, 654, 799, 900, 1005, 1056
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 675
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 4 cut(s) 99, 183, 858, 957
StyI CCWWGG 2 cut(s) 213, 1011
TaaI ACNGT 4 cut(s) 319, 550, 589, 977
TaiI ACGT 1 cut(s) 248
TaqI TCGA 7 cut(s) 299, 447, 596, 681, 695, 1061, 1069
TasI AATT 7 cut(s) 67, 577, 654, 799, 900, 1005, 1056
TatI WGTACW 1 cut(s) 987
TfiI GAWTC 4 cut(s) 340, 438, 444, 1035
Tru1I TTAA 2 cut(s) 71, 917
Tru9I TTAA 2 cut(s) 71, 917
TscAI CASTG 2 cut(s) 324, 1045
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 3 cut(s) 96, 148, 736
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 7 cut(s) 17, 513, 522, 822, 939, 950, 1061
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 324, 1045
VpaK11BI GGWCC 2 cut(s) 108, 465
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 264
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.