RLG00000000755

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012941
Physical Location & Seq
Forward (+)
5002628 .. 5005418
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000755

Sequence Viewer

Length: 1260 bp
ATGAAGGCAAGAGATGCCAAAGGAGGTCTTTCTGCAGATTTACTGGTATGTTTTCCTTCAAGAACCAATTTAACCCTTATGCCAAAATCCATTTGCAGCCCAGCAAGGTCCTTAGAAGCCAAAAAGCACCATAACAATCACAACCAGCAGCTCATCAAGAGAGGTAGAACCAAAAGCTTCGGCCAGGCCAGTCCTATGTTATGGGCCAAAACCAAGGCAATGGGCTCCGAAATCTCCGAGCCCACGTCGCCAAAAGTCACATGTGCCGGACAGATCAAGGTTCGGCACAAGACTGGCTCGATCAAAAGCTGGCAATCAGTGATGGAGGAGATTGAGAGGATTCACAAGAATAAAAAGCAAAAGAAGCTGAAACCGAACTGGGCGGAGGCACTCGGGTTCAAGAAAGATGTAATGCACTTCCTAACTTGCTTGCGAAGAATCAGATTCGACTTTCGGTGTTTTGGGTCCTTCCCTCAACCAGATATCACTTCTGACGATGAAGACGATGAAGAAGAAGAGGAAGACAGAGAAGAAAACCATGTGGGTACTGTTGAAGGAAGTGAAAGTACTGACGGAAATTCCAGAACGGTTTTTTCGAAATGGTATATGGTTTTACAGGAAAATCAGAGTGATGGTTTTTGCAAACAAGATGGAATTGAGATAGATGATAGGCCTAGTTTCGATGATGACGGATCGACTTCTGCAGTAACCTCGGTTCCACCACCAAATGCTCTGCTGCTAATGAGGTGCAGGTCTGCTCCTGCACAGAGCTGGTTAGAAGAGAAAGAAGAAGAAAAAAATGATCATGGAGAAGAAGAGGAAGAACAAGAAAAAGAAGAATGCCAGGACGAAAATGTGTCAGAAAAACAAGAGAGAAAAGGCAAAATTACTTTGAAGAGTTTAATGGATGAAGAGAATATGAAGAAGAAGAACGAGAACCTGGTAGTGATGACATACGGTTCTGATTTGTACAACATTTCAACTGAAATTGCCAAGGAGACATGGGTTGTGGGTGGAATCACTGGAATGAAAGATCCAATTTCGAGGAGTCGAATCGTTGTTGTGAAGAAAAACAAAGCTGCCAAAGCTGCCAAAGCCAAAGCTGCTGGAGGCAAGAAAGGTCCGCCTGCAGCACCCGGGAAAGATGCAGGAAAGAAAGACCCCCCAAAACCGACGACTAAGAAGTTACAACTACAAGAGTCAGGGGGTGGATCTACTTGGTCGGATAGCCGGGCTTCACCTCATCCCAAAATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

46.76

Weight (kDa)

8.24

Isoelectric Point (pI)

63.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 741
AciI CCGC 2 cut(s) 383, 1124
AclWI GGATC 3 cut(s) 700, 1028, 1219
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 577, 1251
AfaI GTAC 3 cut(s) 547, 568, 971
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 5 cut(s) 60, 400, 554, 895, 981
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 3 cut(s) 183, 843, 939
AluBI AGCT 8 cut(s) 151, 177, 309, 367, 771, 1079, 1088, 1103
AluI AGCT 8 cut(s) 151, 177, 309, 367, 771, 1079, 1088, 1103
Alw26I GTCTC 1 cut(s) 992
AlwI GGATC 3 cut(s) 700, 1028, 1219
Ama87I CYCGRG 2 cut(s) 392, 1136
AoxI GGCC 4 cut(s) 181, 186, 204, 671
ApeKI GCWGC 7 cut(s) 96, 148, 736, 1079, 1088, 1103, 1130
ApoI RAATTY 2 cut(s) 577, 1251
AspS9I GGNCC 4 cut(s) 108, 204, 465, 1121
AsuC2I CCSGG 3 cut(s) 1137, 1138, 1232
AsuHPI GGTGA 1 cut(s) 1230
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 2 cut(s) 392, 1136
AvaII GGWCC 3 cut(s) 108, 465, 1121
BanII GRGCYC 2 cut(s) 227, 243
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BbsI GAAGAC 2 cut(s) 507, 528
BbvI GCAGC 7 cut(s) 108, 160, 723, 1066, 1075, 1090, 1142
BccI CCATC 3 cut(s) 316, 626, 644
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 3 cut(s) 185, 845, 941
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 3 cut(s) 1137, 1138, 1232
BcoDI GTCTC 1 cut(s) 992
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 3 cut(s) 33, 702, 1128
BfuAI ACCTGC 1 cut(s) 741
BisI GCNGC 7 cut(s) 97, 149, 737, 1080, 1089, 1104, 1131
BlsI GCNGC 7 cut(s) 98, 150, 738, 1081, 1090, 1105, 1132
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 6 cut(s) 185, 845, 941, 1137, 1138, 1232
Bme18I GGWCC 3 cut(s) 108, 465, 1121
BmeT110I CYCGRG 2 cut(s) 392, 1136
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 4 cut(s) 108, 204, 465, 1121
BmiI GGNNCC 3 cut(s) 226, 466, 717
BmrFI CCNGG 6 cut(s) 185, 845, 941, 1137, 1138, 1232
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 2 cut(s) 4, 1135
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 507, 528
BpmI CTGGAG 1 cut(s) 1128
Bpu14I TTCGAA 1 cut(s) 596
BpuMI CCSGG 3 cut(s) 1137, 1138, 1232
BsaJI CCNNGG 4 cut(s) 213, 711, 993, 1136
Bse1I ACTGG 5 cut(s) 48, 189, 298, 383, 1027
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 185, 845, 941
BseDI CCNNGG 4 cut(s) 213, 711, 993, 1136
BseGI GGATG 2 cut(s) 913, 1243
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 5 cut(s) 48, 189, 298, 383, 1027
BseRI GAGGAG 2 cut(s) 341, 1060
BseXI GCAGC 7 cut(s) 108, 160, 723, 1066, 1075, 1090, 1142
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 2 cut(s) 747, 769
BshFI GGCC 4 cut(s) 183, 188, 206, 673
BsiHKCI CYCGRG 2 cut(s) 392, 1136
BsiSI CCGG 3 cut(s) 267, 1137, 1231
BsmAI GTCTC 1 cut(s) 992
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 4 cut(s) 183, 188, 206, 673
BsoBI CYCGRG 2 cut(s) 392, 1136
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 2 cut(s) 227, 243
Bsp1407I TGTACA 1 cut(s) 969
Bsp143I GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
BspACI CCGC 2 cut(s) 383, 1124
BspANI GGCC 4 cut(s) 183, 188, 206, 673
BspLI GGNNCC 3 cut(s) 226, 466, 717
BspMAI CTGCAG 3 cut(s) 37, 706, 1132
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 3 cut(s) 700, 1028, 1219
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 969
BsrI ACTGG 5 cut(s) 48, 189, 298, 383, 1027
BssECI CCNNGG 4 cut(s) 213, 711, 993, 1136
BssMI GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
BssT1I CCWWGG 2 cut(s) 213, 993
Bst2UI CCWGG 3 cut(s) 185, 845, 941
Bst4CI ACNGT 3 cut(s) 550, 589, 959
Bst6I CTCTTC 5 cut(s) 510, 774, 810, 890, 906
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 969
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 3 cut(s) 311, 431, 1128
BstDEI CTNAG 2 cut(s) 112, 1179
BstF5I GGATG 2 cut(s) 913, 1243
BstKTI GATC 6 cut(s) 276, 303, 695, 805, 1036, 1214
BstMAI GTCTC 1 cut(s) 992
BstMBI GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
BstMWI GCNNNNNNNGC 7 cut(s) 14, 247, 364, 1085, 1088, 1094, 1103
BstNI CCWGG 3 cut(s) 185, 845, 941
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 6 cut(s) 183, 843, 939, 1135, 1136, 1230
BstSFI CTRYAG 3 cut(s) 33, 702, 1128
BstV1I GCAGC 7 cut(s) 108, 160, 723, 1066, 1075, 1090, 1142
BstV2I GAAGAC 2 cut(s) 507, 528
BstX2I RGATCY 2 cut(s) 1033, 1211
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 1033, 1211
BsuRI GGCC 4 cut(s) 183, 188, 206, 673
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 2 cut(s) 913, 1243
BtsIMutI CAGTG 2 cut(s) 324, 1020
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 3 cut(s) 311, 431, 1128
Cfr13I GGNCC 4 cut(s) 108, 204, 465, 1121
Cfr9I CCCGGG 1 cut(s) 1136
CsiI ACCWGGT 1 cut(s) 939
Csp6I GTAC 3 cut(s) 546, 567, 970
CviAII CATG 4 cut(s) 261, 539, 806, 1002
CviQI GTAC 3 cut(s) 546, 567, 970
DdeI CTNAG 2 cut(s) 112, 1179
DpnI GATC 6 cut(s) 275, 302, 694, 804, 1035, 1213
DpnII GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 5 cut(s) 510, 774, 810, 890, 906
EarI CTCTTC 5 cut(s) 510, 774, 810, 890, 906
EciI GGCGGA 2 cut(s) 398, 1113
Eco130I CCWWGG 2 cut(s) 213, 993
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 227, 243
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 3 cut(s) 108, 465, 1121
Eco88I CYCGRG 2 cut(s) 392, 1136
EcoO109I RGGNCCY 2 cut(s) 108, 465
EcoRII CCWGG 3 cut(s) 183, 843, 939
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 213, 993
EcoT38I GRGCYC 2 cut(s) 227, 243
ErhI CCWWGG 2 cut(s) 213, 993
FaeI CATG 4 cut(s) 264, 542, 809, 1005
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 4 cut(s) 260, 538, 805, 1001
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 7 cut(s) 97, 149, 737, 1080, 1089, 1104, 1131
FokI GGATG 2 cut(s) 920, 1230
FriOI GRGCYC 2 cut(s) 227, 243
Fsp4HI GCNGC 7 cut(s) 97, 149, 737, 1080, 1089, 1104, 1131
FspBI CTAG 1 cut(s) 675
GluI GCNGC 7 cut(s) 97, 149, 737, 1080, 1089, 1104, 1131
GsaI CCCAGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 4 cut(s) 183, 188, 206, 673
HapII CCGG 3 cut(s) 267, 1137, 1231
Hin1II CATG 4 cut(s) 264, 542, 809, 1005
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 7 cut(s) 340, 438, 444, 1017, 1048, 1053, 1199
HpaII CCGG 3 cut(s) 267, 1137, 1231
HphI GGTGA 1 cut(s) 1230
Hpy188I TCNGA 8 cut(s) 229, 238, 443, 493, 627, 862, 964, 1225
Hpy188III TCNNGA 4 cut(s) 60, 157, 400, 582
Hpy99I CGWCG 2 cut(s) 250, 1177
HpyAV CCTTC 3 cut(s) 66, 478, 548
HpyCH4III ACNGT 3 cut(s) 550, 589, 959
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 9 cut(s) 35, 96, 415, 642, 704, 750, 764, 1130, 1148
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 247, 364, 1085, 1088, 1094, 1103
HpyF3I CTNAG 2 cut(s) 112, 1179
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 4 cut(s) 264, 542, 809, 1005
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
LmnI GCTCC 2 cut(s) 230, 763
Lsp1109I GCAGC 7 cut(s) 108, 160, 723, 1066, 1075, 1090, 1142
LweI GCATC 2 cut(s) 4, 1135
MabI ACCWGGT 1 cut(s) 939
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 256, 706, 1185
MalI GATC 6 cut(s) 275, 302, 694, 804, 1035, 1213
MboI GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
MflI RGATCY 2 cut(s) 1033, 1211
MhlI GDGCHC 2 cut(s) 227, 243
MluCI AATT 7 cut(s) 67, 577, 654, 885, 987, 1038, 1251
MlyI GAGTC 2 cut(s) 1057, 1208
MmeI TCCRAC 1 cut(s) 1203
MseI TTAA 2 cut(s) 71, 902
MslI CAYNNNNRTG 1 cut(s) 1025
MspI CCGG 3 cut(s) 267, 1137, 1231
MspR9I CCNGG 6 cut(s) 185, 845, 941, 1137, 1138, 1232
Mva1269I GAATGC 1 cut(s) 845
MvaI CCWGG 3 cut(s) 185, 845, 941
MwoI GCNNNNNNNGC 7 cut(s) 14, 247, 364, 1085, 1088, 1094, 1103
NciI CCSGG 3 cut(s) 1137, 1138, 1232
NdeII GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
NlaIII CATG 4 cut(s) 264, 542, 809, 1005
NlaIV GGNNCC 3 cut(s) 226, 466, 717
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 264
NspV TTCGAA 1 cut(s) 596
PceI AGGCCT 1 cut(s) 673
PciI ACATGT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 2 cut(s) 501, 593
PctI GAATGC 1 cut(s) 845
PfeI GAWTC 5 cut(s) 340, 438, 444, 1017, 1053
PkrI GCNGC 7 cut(s) 98, 150, 738, 1081, 1090, 1105, 1132
PleI GAGTC 2 cut(s) 1056, 1207
PpsI GAGTC 2 cut(s) 1056, 1207
PpuMI RGGWCCY 2 cut(s) 108, 465
PscI ACATGT 1 cut(s) 260
Psp5II RGGWCCY 2 cut(s) 108, 465
Psp6I CCWGG 3 cut(s) 183, 843, 939
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 3 cut(s) 183, 843, 939
PspN4I GGNNCC 3 cut(s) 226, 466, 717
PspPI GGNCC 4 cut(s) 108, 204, 465, 1121
PspPPI RGGWCCY 2 cut(s) 108, 465
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PstI CTGCAG 3 cut(s) 37, 706, 1132
PsuI RGATCY 2 cut(s) 1033, 1211
RsaI GTAC 3 cut(s) 547, 568, 971
RsaNI GTAC 3 cut(s) 546, 567, 970
RseI CAYNNNNRTG 1 cut(s) 1025
SaqAI TTAA 2 cut(s) 71, 902
SatI GCNGC 7 cut(s) 97, 149, 737, 1080, 1089, 1104, 1131
Sau3AI GATC 6 cut(s) 273, 300, 692, 802, 1033, 1211
Sau96I GGNCC 4 cut(s) 108, 204, 465, 1121
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 2 cut(s) 1057, 1208
ScrFI CCNGG 6 cut(s) 185, 845, 941, 1137, 1138, 1232
SduI GDGCHC 2 cut(s) 227, 243
SexAI ACCWGGT 1 cut(s) 939
SfaNI GCATC 2 cut(s) 4, 1135
SfcI CTRYAG 3 cut(s) 33, 702, 1128
SfuI TTCGAA 1 cut(s) 596
SinI GGWCC 3 cut(s) 108, 465, 1121
SmaI CCCGGG 1 cut(s) 1138
SmiMI CAYNNNNRTG 1 cut(s) 1025
Sse9I AATT 7 cut(s) 67, 577, 654, 885, 987, 1038, 1251
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 2 cut(s) 383, 1124
SspMI CTAG 1 cut(s) 675
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 6 cut(s) 183, 843, 939, 1135, 1136, 1230
StyI CCWWGG 2 cut(s) 213, 993
TaaI ACNGT 3 cut(s) 550, 589, 959
TaiI ACGT 1 cut(s) 248
TaqI TCGA 7 cut(s) 299, 447, 596, 681, 695, 1043, 1051
TasI AATT 7 cut(s) 67, 577, 654, 885, 987, 1038, 1251
TatI WGTACW 2 cut(s) 566, 969
TfiI GAWTC 5 cut(s) 340, 438, 444, 1017, 1053
Tru1I TTAA 2 cut(s) 71, 902
Tru9I TTAA 2 cut(s) 71, 902
TscAI CASTG 2 cut(s) 324, 1027
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 7 cut(s) 96, 148, 736, 1079, 1088, 1103, 1130
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 6 cut(s) 17, 513, 522, 924, 935, 1043
TspGWI ACGGA 2 cut(s) 588, 705
TspMI CCCGGG 1 cut(s) 1136
TspRI CASTG 2 cut(s) 324, 1027
VpaK11BI GGWCC 3 cut(s) 108, 465, 1121
XapI RAATTY 2 cut(s) 577, 1251
XceI RCATGY 1 cut(s) 264
XmaI CCCGGG 1 cut(s) 1136
XspI CTAG 1 cut(s) 675
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.