Prupe.1G514400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012941
Physical Location & Seq
Forward (+)
42328526 .. 42330327
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G514400.1

Sequence Viewer

Length: 1107 bp
ATGAAGTCAAGGGAAGCCAAAGGAGCTCTTTCTGCAGATCTATTAGTGTGTTTTCCTTCAAGAACCAGTCTAAAACTGATGCCCAAGCCAATTTGCAGCCCAGCGAGGCCCTCAGAGCCTAACAAGCGCCACCAGTACAACCAGAACCACCATCACCAACCTCACCACCACCAGCAGCTCGTCAAAAAATCAAGCATTGGCAAAAGCAGTCTTGGCCAAGCAAGCCCTCTGTTATGGGCCAAGACCAAGCCCATGGGCTCTGAGATCTCCGAGCCCACGTCCCCAAAAGTCACCTGCGCTGGCCAGATCAAAGTCAGGCACAAGTCCGGCTCGTGCAAAAGCTGGCAGTCAGTGATGGAGGAGATTGAGAGAATTCACAACAACAAGAAACAGAGGAAACAGAGACGACCCGGTTGGGCAGAGGCTCTTGGGTTCAAGAAAGAAGTCATGCAATTCTTGACTTGCTTGAGAAACATTCGGTTTGATTTTCGGTGCTTTGGTTCTTTTCCTCAACCGGATATTTCTAGCGACGAGGATGAAGAAGAAGAAGAGGAAGAAAACAGGGACTGTCGAGAAAACCATGTGGGTGGTGAGGGAATTAGCGACGGTGGTGATCAGAGTAGCTCGAGGGCTATGTTTTCAAAATGGTTTATGGTTTTACAGGAAAATCAGAGTAATGGGGTTTGCACAGAAGATAAAAAGGAGAGAAATGATAGGCAGAGTTTGGATGATGAGGTTGGATCAACTTCTGAAGTTCCAGTAGCCTCTGTTCCGCCACCAAATGCTCTGTTGCTAATGAGGTGCAGGTCTGCTCCTGCAAAGACTTGGCTAGAAGAGAAAGAAGAAGAAGAAGAGGATGATGAGGATGAAGAAGAGGAAGAAAAAGAAGCAGAAAAGAAAAATGGATTGGAAAAAGAAGAGAAAAAGGCCAAAGTTACTTTGAAGAGCTTAATGGAGGAAGATAAACAGAGAAAGAAGACAGAGAGCTTGGTGGTGATGGCATGTGATTCTGATTTCTACAAGATTTCTTCTGATATTGCCAAGGAGACATGGGTTGTTGGTGGAATGAAAGATGCAATTTCCAGAAGTCGAAGTTGGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

41.97

Weight (kDa)

6.27

Isoelectric Point (pI)

75.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 302
Acc36I ACCTGC 2 cut(s) 302, 795
AciI CCGC 1 cut(s) 773
AclWI GGATC 1 cut(s) 748
AcoI YGGCCR 2 cut(s) 214, 301
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 4 cut(s) 60, 436, 642, 943
AjiI CACGTC 1 cut(s) 279
AjuI GAANNNNNNNTTGG 3 cut(s) 890, 922, 1078
AluBI AGCT 6 cut(s) 26, 178, 342, 624, 948, 987
AluI AGCT 6 cut(s) 26, 178, 342, 624, 948, 987
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 2 cut(s) 397, 1040
AlwI GGATC 1 cut(s) 748
AlwNI CAGNNNCTG 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 625
AoxI GGCC 5 cut(s) 107, 214, 237, 301, 927
ApeKI GCWGC 2 cut(s) 96, 175
ApoI RAATTY 1 cut(s) 372
AspLEI GCGC 2 cut(s) 129, 299
AspS9I GGNCC 2 cut(s) 108, 237
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 6 cut(s) 146, 155, 283, 602, 623, 1006
AvaI CYCGRG 1 cut(s) 625
BalI TGGCCA 2 cut(s) 216, 303
BanII GRGCYC 3 cut(s) 28, 260, 276
BauI CACGAG 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 983
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 108, 187
BccI CCATC 3 cut(s) 159, 349, 991
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 397, 1040
BfaI CTAG 2 cut(s) 525, 830
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 130
BfuAI ACCTGC 2 cut(s) 302, 795
BglII AGATCT 2 cut(s) 37, 264
BisI GCNGC 2 cut(s) 97, 176
BlsI GCNGC 2 cut(s) 98, 177
Bme1390I CCNGG 1 cut(s) 411
BmeT110I CYCGRG 1 cut(s) 625
BmgBI CACGTC 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 108, 237
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 69, 1063
BpiI GAAGAC 1 cut(s) 983
BpuEI CTTGAG 1 cut(s) 487
BpuMI CCSGG 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 252, 1041
BsaWI WCCGGW 1 cut(s) 514
Bse1I ACTGG 3 cut(s) 66, 133, 758
BseDI CCNNGG 2 cut(s) 252, 1041
BseGI GGATG 4 cut(s) 541, 733, 862, 871
BseMII CTCAG 2 cut(s) 126, 252
BseNI ACTGG 3 cut(s) 66, 133, 758
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 108, 187
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 823
BshFI GGCC 5 cut(s) 109, 216, 239, 303, 929
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 625
BsiSI CCGG 3 cut(s) 327, 411, 515
BslFI GGGAC 2 cut(s) 265, 578
BsmAI GTCTC 2 cut(s) 397, 1040
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 2 cut(s) 265, 578
BsnI GGCC 5 cut(s) 109, 216, 239, 303, 929
BsoBI CYCGRG 1 cut(s) 625
Bsp1286I GDGCHC 3 cut(s) 28, 260, 276
Bsp143I GATC 5 cut(s) 37, 264, 306, 613, 740
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 773
BspANI GGCC 5 cut(s) 109, 216, 239, 303, 929
BspCNI CTCAG 2 cut(s) 125, 253
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 2 cut(s) 302, 795
BspPI GGATC 1 cut(s) 748
BspQI GCTCTTC 1 cut(s) 938
BsrI ACTGG 3 cut(s) 66, 133, 758
BssECI CCNNGG 2 cut(s) 252, 1041
BssMI GATC 5 cut(s) 37, 264, 306, 613, 740
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 252, 1041
Bst2BI CACGAG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 569, 608
Bst6I CTCTTC 7 cut(s) 543, 828, 846, 867, 912, 938, 1094
BstC8I GCNNGC 3 cut(s) 223, 301, 344
BstDEI CTNAG 2 cut(s) 112, 261
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 4 cut(s) 541, 733, 862, 871
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 299
BstKTI GATC 5 cut(s) 40, 267, 309, 616, 743
BstMAI GTCTC 2 cut(s) 397, 1040
BstMBI GATC 5 cut(s) 37, 264, 306, 613, 740
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 115, 124, 213, 222
BstNSI RCATGY 1 cut(s) 1005
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 108, 187
BstV2I GAAGAC 1 cut(s) 983
BstX2I RGATCY 2 cut(s) 37, 264
BstXI CCANNNNNNTGG 2 cut(s) 253, 587
BstYI RGATCY 2 cut(s) 37, 264
BsuRI GGCC 5 cut(s) 109, 216, 239, 303, 929
BtgI CCRYGG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 279
BtsCI GGATG 4 cut(s) 541, 733, 862, 871
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 2 cut(s) 302, 795
Cac8I GCNNGC 3 cut(s) 223, 301, 344
CaiI CAGNNNCTG 1 cut(s) 567
CfoI GCGC 2 cut(s) 129, 299
Cfr13I GGNCC 2 cut(s) 108, 237
Csp6I GTAC 1 cut(s) 136
CviAII CATG 5 cut(s) 253, 448, 581, 1002, 1050
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 112, 261
DpnI GATC 5 cut(s) 39, 266, 308, 615, 742
DpnII GATC 5 cut(s) 37, 264, 306, 613, 740
EaeI YGGCCR 2 cut(s) 214, 301
Eam1104I CTCTTC 7 cut(s) 543, 828, 846, 867, 912, 938, 1094
EarI CTCTTC 7 cut(s) 543, 828, 846, 867, 912, 938, 1094
EciI GGCGGA 1 cut(s) 762
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 252, 1041
Eco24I GRGCYC 3 cut(s) 28, 260, 276
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 771
Eco88I CYCGRG 1 cut(s) 625
EcoICRI GAGCTC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 252, 1041
EcoT38I GRGCYC 3 cut(s) 28, 260, 276
ErhI CCWWGG 2 cut(s) 252, 1041
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 5 cut(s) 256, 451, 584, 1005, 1053
FaiI YATR 8 cut(s) 235, 254, 449, 582, 635, 653, 1003, 1051
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 2 cut(s) 265, 578
FatI CATG 5 cut(s) 252, 447, 580, 1001, 1049
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 2 cut(s) 97, 176
FokI GGATG 4 cut(s) 548, 740, 869, 878
FriOI GRGCYC 3 cut(s) 28, 260, 276
Fsp4HI GCNGC 2 cut(s) 97, 176
FspBI CTAG 2 cut(s) 525, 830
GlaI GCGC 2 cut(s) 128, 298
GluI GCNGC 2 cut(s) 97, 176
GsaI CCCAGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 5 cut(s) 109, 216, 239, 303, 929
HapII CCGG 3 cut(s) 327, 411, 515
HhaI GCGC 2 cut(s) 129, 299
Hin1II CATG 5 cut(s) 256, 451, 584, 1005, 1053
Hin6I GCGC 2 cut(s) 127, 297
HinP1I GCGC 2 cut(s) 127, 297
HinfI GANTC 1 cut(s) 1007
HpaII CCGG 3 cut(s) 327, 411, 515
HphI GGTGA 6 cut(s) 146, 155, 283, 602, 623, 1006
Hpy188I TCNGA 8 cut(s) 115, 262, 271, 618, 672, 751, 1012, 1033
Hpy188III TCNNGA 5 cut(s) 60, 436, 457, 572, 1083
Hpy99I CGWCG 2 cut(s) 533, 608
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 569, 608
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 8 cut(s) 35, 96, 336, 451, 687, 804, 818, 1076
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 115, 124, 213, 222
HpyF3I CTNAG 2 cut(s) 112, 261
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 5 cut(s) 256, 451, 584, 1005, 1053
HspAI GCGC 2 cut(s) 127, 297
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 5 cut(s) 37, 264, 306, 613, 740
LguI GCTCTTC 1 cut(s) 938
LmnI GCTCC 2 cut(s) 23, 817
Lsp1109I GCAGC 2 cut(s) 108, 187
LweI GCATC 2 cut(s) 69, 1063
MaeI CTAG 2 cut(s) 525, 830
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 289, 934
MalI GATC 5 cut(s) 39, 266, 308, 615, 742
MboI GATC 5 cut(s) 37, 264, 306, 613, 740
MflI RGATCY 2 cut(s) 37, 264
MhlI GDGCHC 3 cut(s) 28, 260, 276
MlsI TGGCCA 2 cut(s) 216, 303
MluCI AATT 5 cut(s) 90, 372, 452, 597, 1077
MluNI TGGCCA 2 cut(s) 216, 303
MmeI TCCRAC 2 cut(s) 718, 1076
Mox20I TGGCCA 2 cut(s) 216, 303
MscI TGGCCA 2 cut(s) 216, 303
MseI TTAA 1 cut(s) 950
MslI CAYNNNNRTG 1 cut(s) 585
Msp20I TGGCCA 2 cut(s) 216, 303
MspI CCGG 3 cut(s) 327, 411, 515
MspR9I CCNGG 1 cut(s) 411
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 115, 124, 213, 222
NciI CCSGG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 252
NdeII GATC 5 cut(s) 37, 264, 306, 613, 740
NlaIII CATG 5 cut(s) 256, 451, 584, 1005, 1053
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 1005
PaeR7I CTCGAG 1 cut(s) 625
PaqCI CACCTGC 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 938
PfeI GAWTC 1 cut(s) 1007
PkrI GCNGC 2 cut(s) 98, 177
Psp124BI GAGCTC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 108, 237
PspXI VCTCGAGB 1 cut(s) 625
PsrI GAACNNNNNNTAC 2 cut(s) 753, 785
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 567
PsuI RGATCY 2 cut(s) 37, 264
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 938
SaqAI TTAA 1 cut(s) 950
SatI GCNGC 2 cut(s) 97, 176
Sau3AI GATC 5 cut(s) 37, 264, 306, 613, 740
Sau96I GGNCC 2 cut(s) 108, 237
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 3 cut(s) 28, 260, 276
SfaNI GCATC 2 cut(s) 69, 1063
SfcI CTRYAG 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 625
SlaI CTCGAG 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 2 cut(s) 466, 625
SmoI CTYRAG 2 cut(s) 466, 625
Sse9I AATT 5 cut(s) 90, 372, 452, 597, 1077
SsiI CCGC 1 cut(s) 773
SspMI CTAG 2 cut(s) 525, 830
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 2 cut(s) 252, 1041
TaaI ACNGT 2 cut(s) 569, 608
TaiI ACGT 1 cut(s) 281
TaqI TCGA 3 cut(s) 571, 626, 1090
TasI AATT 5 cut(s) 90, 372, 452, 597, 1077
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 1 cut(s) 950
Tru9I TTAA 1 cut(s) 950
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 96, 175
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 4 cut(s) 17, 552, 882, 1082
TspRI CASTG 1 cut(s) 357
XapI RAATTY 1 cut(s) 372
XceI RCATGY 1 cut(s) 1005
XhoI CTCGAG 1 cut(s) 625
XspI CTAG 2 cut(s) 525, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.