pycom08g15460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012941
Physical Location & Seq
Forward (+)
15172556 .. 15173653
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g15460.1

Sequence Viewer

Length: 1098 bp
ATGAAGGGAAGGGAAGCCAAAGGAGCGCTCTCAGCTGATCTCTTGGTATGTTTTCCTTCAAGAACCAATCTAAAACTCATGCCAAAGCCAATTTGCAGTCCGGCGAGGCCTTCGGAGCCCAACAACCGCCACCACCACCATCCCCACCACCACCAACAGCTCGTGAAGAAAACGAGCATTGGGAAAAGTGGTCTTGGCCACGCCAGTCCTCTGCTGTGGACCAAGACTAAGCATGCGGACTCAGAGAACTCCGAGCCCACCTCCCCAAAAGTCACCTGTGCCGGACAAATCAAAGTCCGGCACAGGTCTGGCTCATGCAAAAGCTGGCAAACAGTGATGGAAGAGATAGAGAGAATTCACAACAAAAAACAGAGGAAACAGAAGAGGCCCAATTGGGCTGAGGCTCTTGGGTTCAAGAAAGAAGTCATGCAATTCTTGACTTGCTTGCGAAGCATTAGGTTCGATTTTCGGTGTTTCGGTTCTTTTCCTCACGAATCCGGTATTACTTCTGAGGACGAAGAAGACGAAGAAGAGGAAGAAGAGAACAGAGACCGTCGAGAAAACCATGTGGGTGGTGAGGGAATTAGTGACGGTGGTGACCAGAGTAGCTCAAGCACTGTGTTTTCGAAGTGGTTCATGATTTTACAGGAAAATCAGATTAATGGGTTTTGTAAAGAGGACAAGAAAAAGAGAAACTGTACGCCAAATTTCGATGATGATGTCGGAATTGGATCAACTTCTGAAGCTCCGGCAGCGGCCGTTCCACCGCCGAATGCTCTGTTGCTAATGAGGTGCAGGTCCGCCCCTGCAAAAACATGGCTGGAAGAGAAAGAAGACAAAGATGAGGAGGAGGAGGAGGACGACGACGAAGATGAAGAAAAAGAAGGAGAAAATGGAATGGAGAAAGAGGAGAAAAAAGCAAAAGTTACACTGAGGAGTTTAATGGAGGAAGACAAGCAGAACAAAAAGTTGGAGAACTTGGTGGCGATGGCATATGATTCTGATTTCTACAACATTTCATCAGACATTGCAAAGGAGACGTGGGTTGTTGGTGGATTGAAGGAAGCAATTTCCAGGAGTCGAAGTTGGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

41.52

Weight (kDa)

5.98

Isoelectric Point (pI)

67.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 786
AciI CCGC 5 cut(s) 127, 236, 755, 767, 801
AclWI GGATC 1 cut(s) 739
AcoI YGGCCR 2 cut(s) 196, 756
AcsI RAATTY 2 cut(s) 354, 706
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 1 cut(s) 700
AfeI AGCGCT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 60, 415, 1060
AjiI CACGTC 1 cut(s) 1041
AjnI CCWGG 1 cut(s) 1073
AjuI GAANNNNNNNTTGG 2 cut(s) 953, 985
AluBI AGCT 5 cut(s) 35, 160, 324, 609, 746
AluI AGCT 5 cut(s) 35, 160, 324, 609, 746
Alw26I GTCTC 2 cut(s) 543, 1031
AlwI GGATC 1 cut(s) 739
Aor51HI AGCGCT 1 cut(s) 27
AoxI GGCC 4 cut(s) 107, 196, 386, 756
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 2 cut(s) 354, 706
AseI ATTAAT 1 cut(s) 660
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 219, 387, 798
AsuHPI GGTGA 3 cut(s) 265, 587, 608
AsuII TTCGAA 1 cut(s) 626
AvaII GGWCC 2 cut(s) 219, 798
BalI TGGCCA 1 cut(s) 198
BanII GRGCYC 2 cut(s) 120, 258
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 3 cut(s) 528, 840, 957
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 764
BccI CCATC 3 cut(s) 147, 331, 982
BceAI ACGGC 1 cut(s) 743
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 1 cut(s) 1075
BcoDI GTCTC 2 cut(s) 543, 1031
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 786
BisI GCNGC 2 cut(s) 753, 756
BlsI GCNGC 2 cut(s) 754, 757
Bme1390I CCNGG 1 cut(s) 1075
Bme18I GGWCC 2 cut(s) 219, 798
BmgBI CACGTC 1 cut(s) 1041
BmgT120I GGNCC 3 cut(s) 219, 387, 798
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 1075
BpiI GAAGAC 3 cut(s) 528, 840, 957
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 595
BsaI GGTCTC 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 497
BsaXI ACNNNNNCTCC 1 cut(s) 1069
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 1026
BseBI CCWGG 1 cut(s) 1075
BseGI GGATG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 1026
BseMII CTCAG 5 cut(s) 45, 255, 390, 501, 923
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 6 cut(s) 860, 863, 866, 869, 923, 949
BseX3I CGGCCG 1 cut(s) 756
BseXI GCAGC 1 cut(s) 764
BsgI GTGCAG 1 cut(s) 814
Bsh1285I CGRYCG 1 cut(s) 759
BshFI GGCC 4 cut(s) 109, 198, 388, 758
BsiEI CGRYCG 1 cut(s) 759
BsiSI CCGG 5 cut(s) 101, 282, 298, 498, 749
BsmAI GTCTC 2 cut(s) 543, 1031
BsmBI CGTCTC 1 cut(s) 1031
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 4 cut(s) 109, 198, 388, 758
Bso31I GGTCTC 1 cut(s) 543
Bsp119I TTCGAA 1 cut(s) 626
Bsp1286I GDGCHC 2 cut(s) 120, 258
Bsp143I GATC 2 cut(s) 37, 731
BspACI CCGC 5 cut(s) 127, 236, 755, 767, 801
BspANI GGCC 4 cut(s) 109, 198, 388, 758
BspCNI CTCAG 5 cut(s) 44, 254, 391, 502, 924
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 1 cut(s) 739
BspT104I TTCGAA 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 1026
BsrI ACTGG 1 cut(s) 204
BssMI GATC 2 cut(s) 37, 731
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 1075
Bst4CI ACNGT 5 cut(s) 334, 554, 593, 619, 698
Bst6I CTCTTC 6 cut(s) 336, 377, 525, 534, 819, 1085
BstBI TTCGAA 1 cut(s) 626
BstC8I GCNNGC 3 cut(s) 234, 326, 446
BstDEI CTNAG 6 cut(s) 31, 228, 241, 399, 510, 932
BstEII GGTNACC 1 cut(s) 596
BstF5I GGATG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 40, 734
BstMAI GTCTC 2 cut(s) 543, 1031
BstMBI GATC 2 cut(s) 37, 731
BstMCI CGRYCG 1 cut(s) 759
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 115, 450, 752
BstNI CCWGG 1 cut(s) 1075
BstNSI RCATGY 1 cut(s) 236
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 1073
BstV1I GCAGC 1 cut(s) 764
BstV2I GAAGAC 3 cut(s) 528, 840, 957
BstXI CCANNNNNNTGG 1 cut(s) 572
BstZI CGGCCG 1 cut(s) 756
BsuRI GGCC 4 cut(s) 109, 198, 388, 758
BtgZI GCGATG 1 cut(s) 1001
BtrI CACGTC 1 cut(s) 1041
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 3 cut(s) 339, 615, 929
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 3 cut(s) 234, 326, 446
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 219, 387, 798
Csp6I GTAC 1 cut(s) 699
CviAII CATG 7 cut(s) 79, 233, 315, 427, 566, 637, 816
CviQI GTAC 1 cut(s) 699
DdeI CTNAG 6 cut(s) 31, 228, 241, 399, 510, 932
DpnI GATC 2 cut(s) 39, 733
DpnII GATC 2 cut(s) 37, 731
EaeI YGGCCR 2 cut(s) 196, 756
EagI CGGCCG 1 cut(s) 756
Eam1104I CTCTTC 6 cut(s) 336, 377, 525, 534, 819, 1085
EarI CTCTTC 6 cut(s) 336, 377, 525, 534, 819, 1085
EciI GGCGGA 1 cut(s) 790
EclXI CGGCCG 1 cut(s) 756
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 120, 258
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 219, 798
Eco47III AGCGCT 1 cut(s) 27
Eco52I CGGCCG 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 596
EcoRI GAATTC 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 1073
EcoT38I GRGCYC 2 cut(s) 120, 258
Esp3I CGTCTC 1 cut(s) 1031
FaeI CATG 7 cut(s) 82, 236, 318, 430, 569, 640, 819
FatI CATG 7 cut(s) 78, 232, 314, 426, 565, 636, 815
FauNDI CATATG 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 753, 756
FokI GGATG 1 cut(s) 126
FriOI GRGCYC 2 cut(s) 120, 258
Fsp4HI GCNGC 2 cut(s) 753, 756
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 753, 756
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 4 cut(s) 109, 198, 388, 758
HapII CCGG 5 cut(s) 101, 282, 298, 498, 749
HhaI GCGC 1 cut(s) 28
Hin1II CATG 7 cut(s) 82, 236, 318, 430, 569, 640, 819
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 4 cut(s) 239, 494, 998, 1078
HpaII CCGG 5 cut(s) 101, 282, 298, 498, 749
HphI GGTGA 3 cut(s) 265, 587, 608
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 9 cut(s) 115, 244, 253, 511, 657, 725, 742, 1003, 1024
Hpy188III TCNNGA 7 cut(s) 60, 163, 415, 436, 491, 557, 637
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 3 cut(s) 558, 866, 869
HpyAV CCTTC 5 cut(s) 3, 66, 120, 878, 1054
HpyCH4III ACNGT 5 cut(s) 334, 554, 593, 619, 698
HpyCH4IV ACGT 1 cut(s) 1040
HpyCH4V TGCA 6 cut(s) 96, 318, 430, 795, 809, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 115, 450, 752
HpyF3I CTNAG 6 cut(s) 31, 228, 241, 399, 510, 932
HpySE526I ACGT 1 cut(s) 1040
Hsp92II CATG 7 cut(s) 82, 236, 318, 430, 569, 640, 819
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 37, 731
LmnI GCTCC 3 cut(s) 23, 115, 751
Lsp1109I GCAGC 1 cut(s) 764
MaeII ACGT 1 cut(s) 1040
MaeIII GTNAC 4 cut(s) 271, 587, 596, 925
MalI GATC 2 cut(s) 39, 733
MboI GATC 2 cut(s) 37, 731
MfeI CAATTG 1 cut(s) 391
MhlI GDGCHC 2 cut(s) 120, 258
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 8 cut(s) 90, 354, 391, 431, 582, 706, 726, 1068
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 2 cut(s) 233, 1087
MmeI TCCRAC 3 cut(s) 703, 951, 1067
Mox20I TGGCCA 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 632
MscI TGGCCA 1 cut(s) 198
MseI TTAA 2 cut(s) 660, 941
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 2 cut(s) 35, 755
MspI CCGG 5 cut(s) 101, 282, 298, 498, 749
MspR9I CCNGG 1 cut(s) 1075
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 1 cut(s) 1075
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 115, 450, 752
NdeI CATATG 1 cut(s) 994
NdeII GATC 2 cut(s) 37, 731
NlaIII CATG 7 cut(s) 82, 236, 318, 430, 569, 640, 819
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 3 cut(s) 271, 587, 596
NspI RCATGY 1 cut(s) 236
NspV TTCGAA 1 cut(s) 626
PaeI GCATGC 1 cut(s) 236
PagI TCATGA 1 cut(s) 636
PceI AGGCCT 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PctI GAATGC 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 494, 998
PfoI TCCNGGA 1 cut(s) 1073
PkrI GCNGC 2 cut(s) 754, 757
PleI GAGTC 2 cut(s) 233, 1086
PpsI GAGTC 2 cut(s) 233, 1086
PshBI ATTAAT 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 1073
PspEI GGTNACC 1 cut(s) 596
PspGI CCWGG 1 cut(s) 1073
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 3 cut(s) 219, 387, 798
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 700
RsaNI GTAC 1 cut(s) 699
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 2 cut(s) 660, 941
SatI GCNGC 2 cut(s) 753, 756
Sau3AI GATC 2 cut(s) 37, 731
Sau96I GGNCC 3 cut(s) 219, 387, 798
SchI GAGTC 2 cut(s) 233, 1087
ScrFI CCNGG 1 cut(s) 1075
SduI GDGCHC 2 cut(s) 120, 258
SfuI TTCGAA 1 cut(s) 626
SinI GGWCC 2 cut(s) 219, 798
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
SphI GCATGC 1 cut(s) 236
Sse9I AATT 8 cut(s) 90, 354, 391, 431, 582, 706, 726, 1068
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 5 cut(s) 127, 236, 755, 767, 801
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 1073
TaaI ACNGT 5 cut(s) 334, 554, 593, 619, 698
TaiI ACGT 1 cut(s) 1043
TaqI TCGA 5 cut(s) 462, 556, 626, 711, 1081
TasI AATT 8 cut(s) 90, 354, 391, 431, 582, 706, 726, 1068
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 2 cut(s) 494, 998
Tru1I TTAA 2 cut(s) 660, 941
Tru9I TTAA 2 cut(s) 660, 941
TscAI CASTG 3 cut(s) 339, 622, 936
TseFI GTSAC 3 cut(s) 271, 587, 596
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 3 cut(s) 271, 587, 596
TspDTI ATGAA 4 cut(s) 17, 625, 888, 1008
TspRI CASTG 3 cut(s) 339, 622, 936
VpaK11BI GGWCC 2 cut(s) 219, 798
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 2 cut(s) 354, 706
XceI RCATGY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.