Rmu_sc0008652.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008652.1
OG0012941
Physical Location & Seq
Reverse (-)
10000 .. 11082
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008652.1_g000005.1.cds

Sequence Viewer

Length: 1083 bp
atgaaggcaagagatgccaaaggaggtctttctgcagatttactggtatgttttccttcaagaaccaatttaacccttatgccaaaatccatctgcagcccagcaaggtccttagaagccaaaaagcaccacaacaatcacaaccagcagctcatcaagagaggtagaaccaaaagctttggccaggccagtcctatgttatgggccaaaaccaaggcaatgggctcggagatctctgagcccacgtcgccaaaagtcacatgtgccggacagatcaaggttcggcacaagactggctcgatcaaaagctggcaaacagtgatggaggagattgagaggattcacaagaataaaaagcaaaagaagccgaaaccgaactgggcggacgcactcgggttcaagaaagatgtaatgcacttcctaacttgcttgcgaagaatccgattcgactttcggtgttttgggtccttccctcaaccagatatcacttctgacgatgaagacgatgaagaagaagaggaagacacagaagaaaaccatgtgggtactgttgaaggaagtgaaggtactgacgaaaattccagaacggttttttctaaatggtatatggttttacaggaaaatcagagtgatggtttttccaaacaagatggaattgagatagatgacaggcctagtttcgatgatgacggatcgacttctgcagtaccctcagttccaccaccaaatgctctgctgctaatgaggtgcaggtctgctcctgcaaagagctggttagaagagaaagaagaagaaaaaaatgatcatgaagaagaagaagaagaagaagaagaggaggaacaagaaaaagaagaatggcaggaagaaaatgtatcagaaaaacaagagagaaaaggcaaaattactttgaagagtttaatggatgaagagaagatgaagaagaagaacgagaacctggtggtgatgacatacggttctgatttgtacaacatttcaactgaaattgccaaggagacatgggttgtgggtggaatcactggaatgaaagatccaatttcgaggagtcgaagttggaagagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

41.23

Weight (kDa)

5.34

Isoelectric Point (pI)

71.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22230 AT1G78110
fragaria_vesca FvH4_5g37730
malus_domestica MD08G1180900.v1.1 MD15G1366500.v1.1
prunus_persica Prupe.1G514400_v2.0.a1
pyrus_communis pycom08g15460 pycom15g32860
rosa_chinensis RchiOBHm_Chr7g0239471
rosa_laevigata RLG00000000755
rosa_multiflora Rmu_sc0008652.1_g000005
rosa_roxburghii Rroxscaffold_3G00220920
rosa_rugosa Rorug07G0328100
rosa_samantha Rh7AG481600 Rh7BG454400 Rh7CG499600 Rh7DG467700
rosa_wichuraiana Rw7G040350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 741
AciI CCGC 1 cut(s) 383
AclWI GGATC 2 cut(s) 700, 1043
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 4 cut(s) 547, 568, 708, 986
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 5 cut(s) 60, 400, 554, 910, 996
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 2 cut(s) 183, 954
AluBI AGCT 4 cut(s) 151, 177, 309, 771
AluI AGCT 4 cut(s) 151, 177, 309, 771
Alw26I GTCTC 1 cut(s) 1007
AlwI GGATC 2 cut(s) 700, 1043
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 4 cut(s) 181, 186, 204, 671
ApeKI GCWGC 3 cut(s) 96, 148, 736
ApoI RAATTY 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 108, 204, 465
AsuHPI GGTGA 1 cut(s) 973
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 108, 465
BalI TGGCCA 1 cut(s) 183
BanII GRGCYC 2 cut(s) 227, 243
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BbsI GAAGAC 2 cut(s) 507, 528
BbvI GCAGC 3 cut(s) 108, 160, 723
BccI CCATC 4 cut(s) 98, 316, 626, 644
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 2 cut(s) 185, 956
BclI TGATCA 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 1007
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 3 cut(s) 33, 94, 702
BfuAI ACCTGC 1 cut(s) 741
BglII AGATCT 1 cut(s) 231
BisI GCNGC 3 cut(s) 97, 149, 737
BlsI GCNGC 3 cut(s) 98, 150, 738
Bme1390I CCNGG 2 cut(s) 185, 956
Bme18I GGWCC 2 cut(s) 108, 465
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 3 cut(s) 108, 204, 465
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 2 cut(s) 185, 956
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 507, 528
BsaJI CCNNGG 2 cut(s) 213, 1008
BsaXI ACNNNNNCTCC 1 cut(s) 1054
Bse1I ACTGG 5 cut(s) 48, 189, 298, 383, 1042
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 185, 956
BseDI CCNNGG 2 cut(s) 213, 1008
BseGI GGATG 1 cut(s) 928
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 228, 726
BseNI ACTGG 5 cut(s) 48, 189, 298, 383, 1042
BseRI GAGGAG 3 cut(s) 341, 848, 1075
BseXI GCAGC 3 cut(s) 108, 160, 723
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 769
BshFI GGCC 4 cut(s) 183, 188, 206, 673
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 1007
BsnI GGCC 4 cut(s) 183, 188, 206, 673
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 227, 243
Bsp1407I TGTACA 1 cut(s) 984
Bsp143I GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
BspACI CCGC 1 cut(s) 383
BspANI GGCC 4 cut(s) 183, 188, 206, 673
BspCNI CTCAG 2 cut(s) 229, 725
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 3 cut(s) 37, 98, 706
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 2 cut(s) 700, 1043
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 984
BsrI ACTGG 5 cut(s) 48, 189, 298, 383, 1042
BssECI CCNNGG 2 cut(s) 213, 1008
BssMI GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
BssT1I CCWWGG 2 cut(s) 213, 1008
Bst2UI CCWGG 2 cut(s) 185, 956
Bst4CI ACNGT 4 cut(s) 319, 550, 589, 974
Bst6I CTCTTC 6 cut(s) 510, 774, 825, 905, 921, 1070
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 984
BstC8I GCNNGC 2 cut(s) 311, 431
BstDEI CTNAG 3 cut(s) 112, 237, 712
BstF5I GGATG 1 cut(s) 928
BstKTI GATC 6 cut(s) 234, 276, 303, 695, 805, 1051
BstMAI GTCTC 1 cut(s) 1007
BstMBI GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 14, 247, 364
BstNI CCWGG 2 cut(s) 185, 956
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 183, 954
BstSFI CTRYAG 3 cut(s) 33, 94, 702
BstV1I GCAGC 3 cut(s) 108, 160, 723
BstV2I GAAGAC 2 cut(s) 507, 528
BstX2I RGATCY 2 cut(s) 231, 1048
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 231, 1048
BsuRI GGCC 4 cut(s) 183, 188, 206, 673
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 928
BtsIMutI CAGTG 2 cut(s) 324, 1035
BveI ACCTGC 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 311, 431
CciI TCATGA 1 cut(s) 805
Cfr13I GGNCC 3 cut(s) 108, 204, 465
CseI GACGC 1 cut(s) 395
CsiI ACCWGGT 1 cut(s) 954
Csp6I GTAC 4 cut(s) 546, 567, 707, 985
CviAII CATG 4 cut(s) 261, 539, 806, 1017
CviQI GTAC 4 cut(s) 546, 567, 707, 985
DdeI CTNAG 3 cut(s) 112, 237, 712
DpnI GATC 6 cut(s) 233, 275, 302, 694, 804, 1050
DpnII GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 6 cut(s) 510, 774, 825, 905, 921, 1070
EarI CTCTTC 6 cut(s) 510, 774, 825, 905, 921, 1070
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 213, 1008
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 2 cut(s) 227, 243
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 108, 465
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 108, 465
EcoRII CCWGG 2 cut(s) 183, 954
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 213, 1008
EcoT38I GRGCYC 2 cut(s) 227, 243
ErhI CCWWGG 2 cut(s) 213, 1008
FaeI CATG 4 cut(s) 264, 542, 809, 1020
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 4 cut(s) 260, 538, 805, 1016
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 3 cut(s) 97, 149, 737
FokI GGATG 1 cut(s) 935
FriOI GRGCYC 2 cut(s) 227, 243
Fsp4HI GCNGC 3 cut(s) 97, 149, 737
FspBI CTAG 1 cut(s) 675
GluI GCNGC 3 cut(s) 97, 149, 737
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 4 cut(s) 183, 188, 206, 673
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 395
Hin1II CATG 4 cut(s) 264, 542, 809, 1020
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 5 cut(s) 340, 438, 444, 1032, 1063
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 973
Hpy188I TCNGA 7 cut(s) 229, 238, 443, 493, 627, 877, 979
Hpy188III TCNNGA 5 cut(s) 60, 157, 400, 582, 806
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 66, 478, 548, 557
HpyCH4III ACNGT 4 cut(s) 319, 550, 589, 974
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 6 cut(s) 35, 96, 415, 704, 750, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 247, 364
HpyF3I CTNAG 3 cut(s) 112, 237, 712
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 4 cut(s) 264, 542, 809, 1020
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 3 cut(s) 108, 160, 723
LweI GCATC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 954
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 256
MalI GATC 6 cut(s) 233, 275, 302, 694, 804, 1050
MboI GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
MflI RGATCY 2 cut(s) 231, 1048
MhlI GDGCHC 2 cut(s) 227, 243
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 6 cut(s) 67, 577, 654, 900, 1002, 1053
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 1072
MmeI TCCRAC 1 cut(s) 1052
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MseI TTAA 2 cut(s) 71, 917
MslI CAYNNNNRTG 1 cut(s) 1040
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 185, 956
MvaI CCWGG 2 cut(s) 185, 956
MwoI GCNNNNNNNGC 3 cut(s) 14, 247, 364
NdeII GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
NlaIII CATG 4 cut(s) 264, 542, 809, 1020
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 264
PagI TCATGA 1 cut(s) 805
PceI AGGCCT 1 cut(s) 673
PciI ACATGT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PfeI GAWTC 4 cut(s) 340, 438, 444, 1032
PkrI GCNGC 3 cut(s) 98, 150, 738
PleI GAGTC 1 cut(s) 1071
PpsI GAGTC 1 cut(s) 1071
PpuMI RGGWCCY 2 cut(s) 108, 465
PscI ACATGT 1 cut(s) 260
Psp5II RGGWCCY 2 cut(s) 108, 465
Psp6I CCWGG 2 cut(s) 183, 954
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 2 cut(s) 183, 954
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 3 cut(s) 108, 204, 465
PspPPI RGGWCCY 2 cut(s) 108, 465
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PstI CTGCAG 3 cut(s) 37, 98, 706
PsuI RGATCY 2 cut(s) 231, 1048
RsaI GTAC 4 cut(s) 547, 568, 708, 986
RsaNI GTAC 4 cut(s) 546, 567, 707, 985
RseI CAYNNNNRTG 1 cut(s) 1040
SaqAI TTAA 2 cut(s) 71, 917
SatI GCNGC 3 cut(s) 97, 149, 737
Sau3AI GATC 6 cut(s) 231, 273, 300, 692, 802, 1048
Sau96I GGNCC 3 cut(s) 108, 204, 465
SchI GAGTC 1 cut(s) 1072
ScrFI CCNGG 2 cut(s) 185, 956
SduI GDGCHC 2 cut(s) 227, 243
SexAI ACCWGGT 1 cut(s) 954
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 3 cut(s) 33, 94, 702
SinI GGWCC 2 cut(s) 108, 465
SmiMI CAYNNNNRTG 1 cut(s) 1040
Sse9I AATT 6 cut(s) 67, 577, 654, 900, 1002, 1053
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 675
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 2 cut(s) 183, 954
StyI CCWWGG 2 cut(s) 213, 1008
TaaI ACNGT 4 cut(s) 319, 550, 589, 974
TaiI ACGT 1 cut(s) 248
TaqI TCGA 6 cut(s) 299, 447, 681, 695, 1058, 1066
TasI AATT 6 cut(s) 67, 577, 654, 900, 1002, 1053
TatI WGTACW 1 cut(s) 984
TfiI GAWTC 4 cut(s) 340, 438, 444, 1032
Tru1I TTAA 2 cut(s) 71, 917
Tru9I TTAA 2 cut(s) 71, 917
TscAI CASTG 2 cut(s) 324, 1042
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 3 cut(s) 96, 148, 736
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 7 cut(s) 17, 513, 522, 822, 939, 950, 1058
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 324, 1042
VpaK11BI GGWCC 2 cut(s) 108, 465
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 264
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.