AT1G22910

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007154
Physical Location & Seq
Forward (+)
8104993 .. 8108361
3369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22910.4

Sequence Viewer

Length: 750 bp
ATGGCGGGAGGAATAGGGCTGGGAGACACGACATACACGAAGGTGTTTGTGGGAGGATTAGCTTGGGAGACGCATAAGGAGACGATGAAGAAGCACTTTGAGCAGTTTGGAGAGATTTTGGAAGCCGTAGTCATCACCGACAAGGCCTCCGGTAGATCCAAGGGCTACGGATTCGTGACATTCAGGGAAGCGGAGGCGGCGAGGAGTGCTTGTGTGGATGCTACTCCGGTGATCGACGGGAGAAGAGCAAATTGCAACCTCGCCTCTCTCGGTCTTCAAAGATCCAAACCCTCCACTCCTAACCATGGAGGAGGAGGCAGGATTAACAATATGAGAGTGATGATGAGCACAATGCAGACTGGTTTTGGACCACCTCCACCACCACAACCACCCACCTTCACTCACTATCCCCATCTCCCTCTCAATCTCTTTGGGTACTCTCCATACTCGCCAGACTACTCATCATTCCCTACGAACTTATACGGCATGTACGGCTGCACTTCTGGAGGACAATACGGAGTCTATGGAAACAGAAACAGCGGAGGCGGTGGACTAACCGCAGCAGCCGCATCCGCTACTCCTTTTTATCCTTGTGGTGGAGGACATGGTGGGGTCCAGTTCTCTCAACCACAACCATTTTATCATCACTTGTCTTCTTATAACCCTCACCATTACTCTCCTCCGACCTTTTCTATGCAACAAGGCGTAACAGGCTTTCCGCTTCAACCACCTCTTATTCCTTACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

249

Amino Acids

26.68

Weight (kDa)

9.0

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AciI CCGC 9 cut(s) 5, 191, 197, 540, 546, 558, 567, 573, 719
AclWI GGATC 2 cut(s) 150, 276
AfaI GTAC 2 cut(s) 437, 491
AfiI CCNNNNNNNGG 2 cut(s) 305, 596
AgsI TTSAA 2 cut(s) 278, 725
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 3 cut(s) 18, 62, 74
AlwI GGATC 2 cut(s) 150, 276
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 495, 560, 563
AspS9I GGNCC 2 cut(s) 368, 613
AsuHPI GGTGA 3 cut(s) 127, 241, 659
AvaII GGWCC 2 cut(s) 368, 613
BbsI GAAGAC 2 cut(s) 266, 645
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 3 cut(s) 482, 572, 575
BccI CCATC 1 cut(s) 420
BceAI ACGGC 3 cut(s) 110, 499, 508
BcoDI GTCTC 3 cut(s) 18, 62, 74
BisI GCNGC 5 cut(s) 198, 496, 561, 564, 567
BlsI GCNGC 5 cut(s) 199, 497, 562, 565, 568
Bme18I GGWCC 2 cut(s) 368, 613
BmgT120I GGNCC 2 cut(s) 368, 613
BmiI GGNNCC 1 cut(s) 614
BmsI GCATC 2 cut(s) 208, 578
BpiI GAAGAC 2 cut(s) 266, 645
BpmI CTGGAG 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 159, 304
BsaWI WCCGGW 2 cut(s) 149, 226
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 596
Bse1I ACTGG 2 cut(s) 364, 616
BseDI CCNNGG 2 cut(s) 159, 304
BseGI GGATG 2 cut(s) 223, 569
BseLI CCNNNNNNNGG 2 cut(s) 305, 596
BseNI ACTGG 2 cut(s) 364, 616
BseRI GAGGAG 4 cut(s) 217, 324, 327, 669
BseXI GCAGC 3 cut(s) 482, 572, 575
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 2 cut(s) 150, 227
BslI CCNNNNNNNGG 2 cut(s) 305, 596
BsmAI GTCTC 3 cut(s) 18, 62, 74
BsmBI CGTCTC 2 cut(s) 62, 74
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 3 cut(s) 155, 231, 281
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 9 cut(s) 5, 191, 197, 540, 546, 558, 567, 573, 719
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 614
BspPI GGATC 2 cut(s) 150, 276
BspQI GCTCTTC 1 cut(s) 238
BsrI ACTGG 2 cut(s) 364, 616
BssECI CCNNGG 2 cut(s) 159, 304
BssMI GATC 3 cut(s) 155, 231, 281
BssT1I CCWWGG 2 cut(s) 159, 304
Bst4CI ACNGT 1 cut(s) 746
Bst6I CTCTTC 1 cut(s) 238
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 223, 569
BstKTI GATC 3 cut(s) 158, 234, 284
BstMAI GTCTC 3 cut(s) 18, 62, 74
BstMBI GATC 3 cut(s) 155, 231, 281
BstMWI GCNNNNNNNGC 7 cut(s) 100, 197, 206, 492, 566, 572, 711
BstNSI RCATGY 1 cut(s) 490
BstV1I GCAGC 3 cut(s) 482, 572, 575
BstV2I GAAGAC 2 cut(s) 266, 645
BstX2I RGATCY 2 cut(s) 155, 281
BstYI RGATCY 2 cut(s) 155, 281
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 223, 569
Cfr13I GGNCC 2 cut(s) 368, 613
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 436, 490
CviAII CATG 3 cut(s) 305, 487, 605
CviJI RGCY 8 cut(s) 19, 62, 125, 146, 165, 495, 566, 714
CviKI_1 RGCY 8 cut(s) 19, 62, 125, 146, 165, 495, 566, 714
CviQI GTAC 2 cut(s) 436, 490
DpnI GATC 3 cut(s) 157, 233, 283
DpnII GATC 3 cut(s) 155, 231, 281
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 159, 304
Eco147I AGGCCT 1 cut(s) 146
Eco47I GGWCC 2 cut(s) 368, 613
EcoT14I CCWWGG 2 cut(s) 159, 304
ErhI CCWWGG 2 cut(s) 159, 304
Esp3I CGTCTC 2 cut(s) 62, 74
FaeI CATG 3 cut(s) 308, 490, 608
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FatI CATG 3 cut(s) 304, 486, 604
Fnu4HI GCNGC 5 cut(s) 198, 496, 561, 564, 567
FokI GGATG 2 cut(s) 230, 556
Fsp4HI GCNGC 5 cut(s) 198, 496, 561, 564, 567
GluI GCNGC 5 cut(s) 198, 496, 561, 564, 567
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 1 cut(s) 146
HapII CCGG 2 cut(s) 150, 227
HgaI GACGC 1 cut(s) 79
Hin1II CATG 3 cut(s) 308, 490, 608
HinfI GANTC 2 cut(s) 171, 519
HpaII CCGG 2 cut(s) 150, 227
HphI GGTGA 3 cut(s) 127, 241, 659
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 1 cut(s) 684
Hpy188III TCNNGA 2 cut(s) 175, 504
Hpy8I GTNNAC 1 cut(s) 551
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 34, 406
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4V TGCA 4 cut(s) 255, 355, 498, 697
HpyF10VI GCNNNNNNNGC 7 cut(s) 100, 197, 206, 492, 566, 572, 711
Hsp92II CATG 3 cut(s) 308, 490, 608
Kzo9I GATC 3 cut(s) 155, 231, 281
LguI GCTCTTC 1 cut(s) 238
Lsp1109I GCAGC 3 cut(s) 482, 572, 575
LweI GCATC 2 cut(s) 208, 578
MaeIII GTNAC 2 cut(s) 175, 706
MalI GATC 3 cut(s) 157, 233, 283
MboI GATC 3 cut(s) 155, 231, 281
MboII GAAGA 4 cut(s) 100, 255, 266, 645
MflI RGATCY 2 cut(s) 155, 281
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 528
MmeI TCCRAC 1 cut(s) 707
MseI TTAA 2 cut(s) 324, 748
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 2 cut(s) 150, 227
MwoI GCNNNNNNNGC 7 cut(s) 100, 197, 206, 492, 566, 572, 711
NcoI CCATGG 1 cut(s) 304
NdeII GATC 3 cut(s) 155, 231, 281
NlaIII CATG 3 cut(s) 308, 490, 608
NlaIV GGNNCC 1 cut(s) 614
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 1 cut(s) 490
OliI CACNNNNGTG 1 cut(s) 41
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 5 cut(s) 199, 497, 562, 565, 568
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PsiI TTATAA 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 614
PspPI GGNCC 2 cut(s) 368, 613
PsuI RGATCY 2 cut(s) 155, 281
RsaI GTAC 2 cut(s) 437, 491
RsaNI GTAC 2 cut(s) 436, 490
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 324, 748
SatI GCNGC 5 cut(s) 198, 496, 561, 564, 567
Sau3AI GATC 3 cut(s) 155, 231, 281
Sau96I GGNCC 2 cut(s) 368, 613
SchI GAGTC 1 cut(s) 528
SduI GDGCHC 1 cut(s) 350
SetI ASST 7 cut(s) 45, 64, 261, 376, 398, 689, 733
SfaNI GCATC 2 cut(s) 208, 578
SinI GGWCC 2 cut(s) 368, 613
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 1 cut(s) 250
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 9 cut(s) 5, 191, 197, 540, 546, 558, 567, 573, 719
StuI AGGCCT 1 cut(s) 146
StyI CCWWGG 2 cut(s) 159, 304
TaaI ACNGT 1 cut(s) 746
TaqI TCGA 1 cut(s) 234
TaqII GACCGA 1 cut(s) 260
TasI AATT 1 cut(s) 250
TauI GCSGC 2 cut(s) 200, 569
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 324, 748
Tru9I TTAA 2 cut(s) 324, 748
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 495, 560, 563
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 2 cut(s) 183, 531
VpaK11BI GGWCC 2 cut(s) 368, 613
XceI RCATGY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.