RLG00000015581

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007154
Physical Location & Seq
Forward (+)
68130316 .. 68132948
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015581

Sequence Viewer

Length: 957 bp
ATGAGCCCGGCAGTAGCAGCACCAACGGCAACAATAGCAGCAACTAATTTGGGAGGAGGAGCGGCAGGTCAGTTTGGGGACACGACGCACACCAAGGTGTTTGTTGGAGGACTGGCTTGGGAGACCCAGAAGGAGACCATGAAGAAATACTTTGAGCAGTTTGGTGACATCTTGGAGGCTGTTGTCATCACTGACAAGGCCACTGGCAGATCCAAGGGCTACGGATTTGTAACCTTTCGTGAAGCGGAAGCAGCGATGAGAGCTTGTGTCGATGCTGCCCCAGTGATAGATGGAAGGAGGGCCAACTGCAATCTTGCTTCTCTTGGTGTTCAGAGATCCAAGCCTTCTACTCCAAAGCATGGTGGAGGAGGAGGAGGTAGGAACTTTAGGGTAATGGCGGGATCAATATTCCAAGCTGCAGGTGGAGTTGGAGTTGGAGTGGGATCGGGATTTGCAGCAGCTTCTGCAGCAACCGCATTCCCAGCTCATCATCATTATGCCGCCATTCAACAAGGGATTCCAGCTGCTGCTGCTGCTGCTTACAATCTTTATGCCACCGCAGGGTACTCTCCATACTCGCCAGACTACACTTACCCTACGAACTACTACGGTCTATACGGAGGTGGAGCAACAAGCCAGTATCCAGTGTATGGAACGGGTGGGATGCTGACGGGAGGAGCTGCGGCAGCGGCTTTTTACCCGTATCTTCAATACGGAGAAGCAGCGAATGGAGGTGCCGCTGCCTATACTACTTCTGGGGCGCAGAATGTTGGCTATGGTGGCATCCAATACCCACACCATCATCATAATCTCTATCAGTATTCAGCTGCTGGACTAGGAGGCTACCAGCACTATGCTCCTTCCATGTCTCTTGCCCCCTCACCTGCCTTGCAATCACCAGGCGTAAACATGGCCCTTCCTGCTGCACCATTAATTCCAATTCCAGCTCATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

319

Amino Acids

32.39

Weight (kDa)

8.86

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 33 - 88 1.1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 410, 892
Acc36I ACCTGC 3 cut(s) 56, 410, 892
AccB1I GGYRCC 1 cut(s) 734
AccB7I CCANNNNNTGG 2 cut(s) 359, 650
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 9 cut(s) 62, 245, 398, 474, 501, 558, 683, 689, 738
AclWI GGATC 4 cut(s) 204, 330, 409, 451
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 3 cut(s) 359, 561, 650
AgsI TTSAA 2 cut(s) 509, 710
AjnI CCWGG 1 cut(s) 898
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 8 cut(s) 263, 416, 461, 485, 524, 680, 827, 947
AluI AGCT 8 cut(s) 263, 416, 461, 485, 524, 680, 827, 947
Alw26I GTCTC 3 cut(s) 116, 128, 873
AlwI GGATC 4 cut(s) 204, 330, 409, 451
AlwNI CAGNNNCTG 3 cut(s) 464, 527, 830
AoxI GGCC 3 cut(s) 198, 300, 912
AseI ATTAAT 1 cut(s) 932
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 2 cut(s) 300, 913
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 176, 873, 888
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 1 cut(s) 8
BccI CCATC 2 cut(s) 284, 807
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 900
BciVI GTATCC 1 cut(s) 651
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 3 cut(s) 116, 128, 873
BfaI CTAG 2 cut(s) 836, 955
BfmI CTRYAG 2 cut(s) 417, 465
BfuAI ACCTGC 3 cut(s) 56, 410, 892
BfuI GTATCC 1 cut(s) 651
Bme1390I CCNGG 2 cut(s) 8, 900
BmgT120I GGNCC 2 cut(s) 300, 913
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 2 cut(s) 8, 900
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 262, 654, 792
BmuI ACTGGG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 8
BsaI GGTCTC 2 cut(s) 116, 128
BsaJI CCNNGG 2 cut(s) 93, 213
BsaXI ACNNNNNCTCC 4 cut(s) 417, 423, 447, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 561, 650
Bse1I ACTGG 5 cut(s) 117, 208, 281, 637, 644
BseBI CCWGG 1 cut(s) 900
BseDI CCNNGG 2 cut(s) 93, 213
BseGI GGATG 2 cut(s) 669, 783
BseLI CCNNNNNNNGG 3 cut(s) 359, 561, 650
BseNI ACTGG 5 cut(s) 117, 208, 281, 637, 644
BseRI GAGGAG 6 cut(s) 69, 72, 381, 384, 387, 690
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 3 cut(s) 200, 302, 914
BshNI GGYRCC 1 cut(s) 734
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 3 cut(s) 359, 561, 650
BsmAI GTCTC 3 cut(s) 116, 128, 873
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 3 cut(s) 200, 302, 914
Bso31I GGTCTC 2 cut(s) 116, 128
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 209, 335, 401, 443
BspACI CCGC 9 cut(s) 62, 245, 398, 474, 501, 558, 683, 689, 738
BspANI GGCC 3 cut(s) 200, 302, 914
BspLI GGNNCC 1 cut(s) 736
BspMAI CTGCAG 2 cut(s) 421, 469
BspMI ACCTGC 3 cut(s) 56, 410, 892
BspPI GGATC 4 cut(s) 204, 330, 409, 451
BspT107I GGYRCC 1 cut(s) 734
BspTNI GGTCTC 2 cut(s) 116, 128
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 5 cut(s) 117, 208, 281, 637, 644
BssECI CCNNGG 2 cut(s) 93, 213
BssMI GATC 4 cut(s) 209, 335, 401, 443
BssT1I CCWWGG 2 cut(s) 93, 213
Bst2UI CCWGG 1 cut(s) 900
Bst4CI ACNGT 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 464
BstF5I GGATG 2 cut(s) 669, 783
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 4 cut(s) 212, 338, 404, 446
BstMAI GTCTC 3 cut(s) 116, 128, 873
BstMBI GATC 4 cut(s) 209, 335, 401, 443
BstNI CCWGG 1 cut(s) 900
BstSCI CCNGG 2 cut(s) 6, 898
BstSFI CTRYAG 2 cut(s) 417, 465
BstX2I RGATCY 2 cut(s) 209, 335
BstYI RGATCY 2 cut(s) 209, 335
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 200, 302, 914
BtgZI GCGATG 2 cut(s) 269, 935
BtsCI GGATG 2 cut(s) 669, 783
BtsIMutI CAGTG 4 cut(s) 189, 201, 288, 651
BveI ACCTGC 3 cut(s) 56, 410, 892
CaiI CAGNNNCTG 3 cut(s) 464, 527, 830
CfoI GCGC 1 cut(s) 763
Cfr13I GGNCC 2 cut(s) 300, 913
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 565
CviAII CATG 4 cut(s) 139, 359, 865, 910
CviQI GTAC 1 cut(s) 565
DpnI GATC 4 cut(s) 211, 337, 403, 445
DpnII GATC 4 cut(s) 209, 335, 401, 443
Eco130I CCWWGG 2 cut(s) 93, 213
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 116, 128
EcoRII CCWGG 1 cut(s) 898
EcoT14I CCWWGG 2 cut(s) 93, 213
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 93, 213
FaeI CATG 4 cut(s) 142, 362, 868, 913
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 92
FatI CATG 4 cut(s) 138, 358, 864, 909
FauI CCCGC 1 cut(s) 391
FokI GGATG 2 cut(s) 676, 770
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 836, 955
GlaI GCGC 1 cut(s) 762
GsaI CCCAGC 1 cut(s) 485
HaeIII GGCC 3 cut(s) 200, 302, 914
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 763
Hin1II CATG 4 cut(s) 142, 362, 868, 913
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HinfI GANTC 1 cut(s) 517
HpaII CCGG 1 cut(s) 8
HphI GGTGA 3 cut(s) 176, 873, 888
Hpy166II GTNNAC 1 cut(s) 907
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 2 cut(s) 239, 447
Hpy8I GTNNAC 1 cut(s) 907
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 5 cut(s) 124, 288, 354, 870, 926
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4V TGCA 6 cut(s) 309, 419, 455, 467, 892, 926
Hsp92II CATG 4 cut(s) 142, 362, 868, 913
HspAI GCGC 1 cut(s) 761
Kzo9I GATC 4 cut(s) 209, 335, 401, 443
LmnI GCTCC 4 cut(s) 59, 626, 677, 862
LweI GCATC 3 cut(s) 262, 654, 792
MaeI CTAG 2 cut(s) 836, 955
MaeIII GTNAC 2 cut(s) 164, 229
MalI GATC 4 cut(s) 211, 337, 403, 445
MbiI CCGCTC 1 cut(s) 62
MboI GATC 4 cut(s) 209, 335, 401, 443
MboII GAAGA 2 cut(s) 154, 698
MflI RGATCY 2 cut(s) 209, 335
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 46, 933, 939
MmeI TCCRAC 3 cut(s) 85, 409, 415
MseI TTAA 1 cut(s) 932
MslI CAYNNNNRTG 2 cut(s) 95, 495
MspA1I CMGCKG 4 cut(s) 524, 689, 740, 827
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 8, 900
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 1 cut(s) 900
NciI CCSGG 1 cut(s) 8
NdeII GATC 4 cut(s) 209, 335, 401, 443
NlaIII CATG 4 cut(s) 142, 362, 868, 913
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 95
PaqCI CACCTGC 2 cut(s) 410, 892
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 2 cut(s) 359, 650
PshBI ATTAAT 1 cut(s) 932
Psp6I CCWGG 1 cut(s) 898
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 1 cut(s) 898
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 2 cut(s) 300, 913
PstI CTGCAG 2 cut(s) 421, 469
PstNI CAGNNNCTG 3 cut(s) 464, 527, 830
PsuI RGATCY 2 cut(s) 209, 335
PvuII CAGCTG 2 cut(s) 524, 827
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 2 cut(s) 95, 495
SaqAI TTAA 1 cut(s) 932
Sau3AI GATC 4 cut(s) 209, 335, 401, 443
Sau96I GGNCC 2 cut(s) 300, 913
ScrFI CCNGG 2 cut(s) 8, 900
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 3 cut(s) 262, 654, 792
SfcI CTRYAG 2 cut(s) 417, 465
SmiMI CAYNNNNRTG 2 cut(s) 95, 495
Sse9I AATT 3 cut(s) 46, 933, 939
SsiI CCGC 9 cut(s) 62, 245, 398, 474, 501, 558, 683, 689, 738
SspI AATATT 1 cut(s) 408
SspMI CTAG 2 cut(s) 836, 955
StyD4I CCNGG 2 cut(s) 6, 898
StyI CCWWGG 2 cut(s) 93, 213
TaaI ACNGT 1 cut(s) 611
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 46, 933, 939
TauI GCSGC 5 cut(s) 65, 503, 686, 692, 740
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 1 cut(s) 932
Tru9I TTAA 1 cut(s) 932
TscAI CASTG 4 cut(s) 196, 208, 288, 651
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 3 cut(s) 237, 633, 729
TspRI CASTG 4 cut(s) 196, 208, 288, 651
Van91I CCANNNNNTGG 2 cut(s) 359, 650
VspI ATTAAT 1 cut(s) 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XspI CTAG 2 cut(s) 836, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.