FvH4_2g00160

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007154
Physical Location & Seq
Reverse (-)
265630 .. 269890
4261 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00160.t1

Sequence Viewer

Length: 960 bp
ATGAGTCCGGCAGTAGCAGCACCAACGGCAGCAGCGGCTAATCTGCAGGGAGGAGGAGCTGCAGGTCAGTTTGGGGACACGACGTACACCAAGGTGTTTGTTGGAGGATTGGCTTGGGAGACCCAGAAGGAGACCATGAAGAAATACTTTGAGCAGTTTGGTGACATCTTGGAGGCTGTTGTCATCACTGACAAGGCCACCGGCAGATCCAAGGGCTACGGATTTGTAACCTTTCGTGAAGCGGAAGCAGCGATGAGAGCTTGTGTCGATGCTGCCCCAGTGATAGATGGAAGGAGAGCCAACTGCAATCTTGCTTCTCTTGGTGTTCAGAGATCCAAGCCTTCTACTCCAAAGCATGGCGGAGGAGGAGGAGGAGGAGGTAGAAACTTTAGGGTAATGGCGGGATCAATATTCCAAGCTGCAGGTGGAGTTGGAGTTGGAGTGGGATCTGGTTTTGCAGCAGCTTCTGCAGCAACCGCATTCCCAGCGCATCATCATTATGCCGCCATTCAACAAGGGATTCCAGCTGCTGCTGCTGCTGCTTACAATCTTTATGCCACCGCAGGGTACTCTCCATACTCGCCAGACTACACTTACCCTACGAACTACTACGGCCTGTACGGAGGTGGAGCAACAAGCCAGTACCCAATGTACGGAGCAGGCGGGATGCTGACGGGAGGAGCTGCAGCGGCGGCTTTTTACCCGTATCTTCAATACGGAGAAGCAGCGAATGGAGGTGCGGCTGCCTATACCACTTCTGGGGCTCAGAATGTTGGCTATGGTGGCATCCAATACCCACACCATCATCATAATCTCTATCAGTATTCAGCTGCTGGATTAGGGGGCTACCAGCACTATGCTCCCTCCATGTCTCTTGCACCCTCACCCGCCTTGCAATCACCAGGCGTAACCATGGCTGTTCCTGCTGCACCATTAATTCCAATTCCAGCTCACCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

320

Amino Acids

32.39

Weight (kDa)

8.85

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 87 1.1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 413
Acc36I ACCTGC 2 cut(s) 53, 413
AccB7I CCANNNNNTGG 1 cut(s) 356
AclWI GGATC 4 cut(s) 201, 327, 412, 454
AfaI GTAC 5 cut(s) 86, 569, 620, 644, 653
AfiI CCNNNNNNNGG 4 cut(s) 356, 564, 653, 759
AgsI TTSAA 2 cut(s) 512, 713
AjnI CCWGG 1 cut(s) 901
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 8 cut(s) 59, 260, 419, 464, 527, 683, 830, 950
AluI AGCT 8 cut(s) 59, 260, 419, 464, 527, 683, 830, 950
Alw26I GTCTC 3 cut(s) 113, 125, 876
AlwI GGATC 4 cut(s) 201, 327, 412, 454
AlwNI CAGNNNCTG 3 cut(s) 467, 530, 833
AoxI GGCC 2 cut(s) 195, 613
AseI ATTAAT 1 cut(s) 935
AspLEI GCGC 1 cut(s) 490
AsuHPI GGTGA 4 cut(s) 173, 876, 891, 944
BanII GRGCYC 1 cut(s) 766
BccI CCATC 2 cut(s) 281, 810
BceAI ACGGC 2 cut(s) 42, 628
BciT130I CCWGG 1 cut(s) 903
BcoDI GTCTC 3 cut(s) 113, 125, 876
BfaI CTAG 1 cut(s) 958
BfmI CTRYAG 5 cut(s) 44, 60, 420, 468, 684
BfuAI ACCTGC 2 cut(s) 53, 413
Bme1390I CCNGG 1 cut(s) 903
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 1 cut(s) 272
BmsI GCATC 4 cut(s) 259, 499, 657, 795
BmuI ACTGGG 1 cut(s) 272
BsaI GGTCTC 2 cut(s) 113, 125
BsaJI CCNNGG 3 cut(s) 90, 210, 912
BsaXI ACNNNNNCTCC 4 cut(s) 420, 426, 450, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 564, 653, 759
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 278, 640
BseBI CCWGG 1 cut(s) 903
BseDI CCNNGG 3 cut(s) 90, 210, 912
BseGI GGATG 2 cut(s) 672, 786
BseLI CCNNNNNNNGG 4 cut(s) 356, 564, 653, 759
BseMII CTCAG 1 cut(s) 779
BseNI ACTGG 2 cut(s) 278, 640
BseRI GAGGAG 8 cut(s) 66, 69, 378, 381, 384, 387, 390, 693
BseYI CCCAGC 1 cut(s) 484
BsgI GTGCAG 1 cut(s) 912
BshFI GGCC 2 cut(s) 197, 615
BsiSI CCGG 2 cut(s) 8, 201
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 4 cut(s) 356, 564, 653, 759
BsmAI GTCTC 3 cut(s) 113, 125, 876
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 2 cut(s) 197, 615
Bso31I GGTCTC 2 cut(s) 113, 125
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 4 cut(s) 206, 332, 404, 446
Bsp19I CCATGG 1 cut(s) 912
BspANI GGCC 2 cut(s) 197, 615
BspCNI CTCAG 1 cut(s) 778
BspMAI CTGCAG 5 cut(s) 48, 64, 424, 472, 688
BspMI ACCTGC 2 cut(s) 53, 413
BspPI GGATC 4 cut(s) 201, 327, 412, 454
BspTNI GGTCTC 2 cut(s) 113, 125
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 278, 640
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 90, 210, 912
BssMI GATC 4 cut(s) 206, 332, 404, 446
BssT1I CCWWGG 3 cut(s) 90, 210, 912
Bst2UI CCWGG 1 cut(s) 903
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 1 cut(s) 765
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 2 cut(s) 672, 786
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 209, 335, 407, 449
BstMAI GTCTC 3 cut(s) 113, 125, 876
BstMBI GATC 4 cut(s) 206, 332, 404, 446
BstNI CCWGG 1 cut(s) 903
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 5 cut(s) 44, 60, 420, 468, 684
BstX2I RGATCY 3 cut(s) 206, 332, 446
BstYI RGATCY 3 cut(s) 206, 332, 446
BsuRI GGCC 2 cut(s) 197, 615
BtgI CCRYGG 1 cut(s) 912
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 2 cut(s) 672, 786
BtsIMutI CAGTG 2 cut(s) 186, 285
BveI ACCTGC 2 cut(s) 53, 413
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 3 cut(s) 467, 530, 833
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 200
Csp6I GTAC 5 cut(s) 85, 568, 619, 643, 652
CviAII CATG 4 cut(s) 136, 356, 868, 913
CviQI GTAC 5 cut(s) 85, 568, 619, 643, 652
DdeI CTNAG 1 cut(s) 765
DpnI GATC 4 cut(s) 208, 334, 406, 448
DpnII GATC 4 cut(s) 206, 332, 404, 446
EciI GGCGGA 1 cut(s) 375
Eco130I CCWWGG 3 cut(s) 90, 210, 912
Eco24I GRGCYC 1 cut(s) 766
Eco31I GGTCTC 2 cut(s) 113, 125
EcoRII CCWGG 1 cut(s) 901
EcoT14I CCWWGG 3 cut(s) 90, 210, 912
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 3 cut(s) 90, 210, 912
FaeI CATG 4 cut(s) 139, 359, 871, 916
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 89
FatI CATG 4 cut(s) 135, 355, 867, 912
FauI CCCGC 3 cut(s) 394, 656, 895
FokI GGATG 2 cut(s) 679, 773
FriOI GRGCYC 1 cut(s) 766
FspBI CTAG 1 cut(s) 958
GlaI GCGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 488
HaeIII GGCC 2 cut(s) 197, 615
HapII CCGG 2 cut(s) 8, 201
HhaI GCGC 1 cut(s) 490
Hin1II CATG 4 cut(s) 139, 359, 871, 916
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HinfI GANTC 2 cut(s) 4, 520
HpaII CCGG 2 cut(s) 8, 201
HphI GGTGA 4 cut(s) 173, 876, 891, 944
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 330, 768
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 121, 285, 351
HpyCH4IV ACGT 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 765
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 4 cut(s) 139, 359, 871, 916
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 4 cut(s) 206, 332, 404, 446
LmnI GCTCC 5 cut(s) 56, 629, 656, 680, 865
LweI GCATC 4 cut(s) 259, 499, 657, 795
MaeI CTAG 1 cut(s) 958
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 3 cut(s) 161, 226, 907
MalI GATC 4 cut(s) 208, 334, 406, 448
MboI GATC 4 cut(s) 206, 332, 404, 446
MboII GAAGA 2 cut(s) 151, 701
MflI RGATCY 3 cut(s) 206, 332, 446
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 2 cut(s) 936, 942
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 3 cut(s) 82, 412, 418
MseI TTAA 1 cut(s) 935
MslI CAYNNNNRTG 2 cut(s) 92, 498
MspA1I CMGCKG 4 cut(s) 35, 527, 689, 830
MspI CCGG 2 cut(s) 8, 201
MspR9I CCNGG 1 cut(s) 903
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 1 cut(s) 903
NcoI CCATGG 1 cut(s) 912
NdeII GATC 4 cut(s) 206, 332, 404, 446
NlaIII CATG 4 cut(s) 139, 359, 871, 916
NmuCI GTSAC 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 92
PaqCI CACCTGC 1 cut(s) 413
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 356
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 935
Psp6I CCWGG 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 1 cut(s) 901
PstI CTGCAG 5 cut(s) 48, 64, 424, 472, 688
PstNI CAGNNNCTG 3 cut(s) 467, 530, 833
PsuI RGATCY 3 cut(s) 206, 332, 446
PvuII CAGCTG 2 cut(s) 527, 830
RsaI GTAC 5 cut(s) 86, 569, 620, 644, 653
RsaNI GTAC 5 cut(s) 85, 568, 619, 643, 652
RseI CAYNNNNRTG 2 cut(s) 92, 498
SaqAI TTAA 1 cut(s) 935
Sau3AI GATC 4 cut(s) 206, 332, 404, 446
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 1 cut(s) 766
SfaNI GCATC 4 cut(s) 259, 499, 657, 795
SfcI CTRYAG 5 cut(s) 44, 60, 420, 468, 684
SmiMI CAYNNNNRTG 2 cut(s) 92, 498
Sse9I AATT 2 cut(s) 936, 942
SspI AATATT 1 cut(s) 411
SspMI CTAG 1 cut(s) 958
StyD4I CCNGG 1 cut(s) 901
StyI CCWWGG 3 cut(s) 90, 210, 912
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 936, 942
TauI GCSGC 5 cut(s) 38, 506, 692, 695, 743
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 1 cut(s) 935
Tru9I TTAA 1 cut(s) 935
TscAI CASTG 2 cut(s) 193, 285
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 4 cut(s) 234, 636, 669, 732
TspRI CASTG 2 cut(s) 193, 285
Van91I CCANNNNNTGG 1 cut(s) 356
VspI ATTAAT 1 cut(s) 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XspI CTAG 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.