Rorug05G0492300

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007154
Physical Location & Seq
Reverse (-)
67489849 .. 67491240
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0492300.1

Sequence Viewer

Length: 477 bp
ATGGAGAAGGCAAAGAAGTGTCTGGAGGTGAGCGAGGAAGAGTCACGGTGTGTGTCTCGACTCCCCGTTCCATCTCACCCAGTCGGCTCCGGGTTGAGCTTCTACGAGGATTTCGCTCTCAAAGGCATCCGAGTCGACCGAGTCGAACCCGGTCTCGTCGTCTGTACCTTCAAGGTCCCTCCCCGCCTCACCGATAGAAGTGGGAAGTTGGCAAATGGTGCAATTGCAAATCTTGTTGATGAAGTTGGTGGTGCTGTAGTTCATGTTGAGGGTTTACCTATGAGTGTTTCAGTGGACATGTCCATTTCTGTTATGTCCACTGCCAAGCTTAATGATGATTTAGAGATCAGCTCAAAGGTGTTGGGAAAAAGAGGAGGTTATTCTGGAACATTAGTGCTTATGAGAAATAAAGCAACTGGGGAGGTTATTGCTGAAGGTCGGCATTCCTTATTCGGTAGACATCCTAGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

158

Amino Acids

16.9

Weight (kDa)

8.46

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 457
AciI CCGC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 3 cut(s) 99, 328, 351
AluI AGCT 3 cut(s) 99, 328, 351
Alw26I GTCTC 2 cut(s) 60, 158
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 91, 150
AsuHPI GGTGA 3 cut(s) 40, 68, 181
AvaII GGWCC 1 cut(s) 175
BccI CCATC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcnI CCSGG 2 cut(s) 91, 150
BcoDI GTCTC 2 cut(s) 60, 158
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 91, 150
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 88, 177
BmrFI CCNGG 2 cut(s) 91, 150
BmrI ACTGGG 2 cut(s) 74, 426
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 2 cut(s) 74, 426
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 91, 150
BsaI GGTCTC 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 80, 421
BseGI GGATG 2 cut(s) 126, 460
BseNI ACTGG 2 cut(s) 80, 421
BseRI GAGGAG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 90, 150
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 60, 158
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 88, 177
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 2 cut(s) 80, 421
BssMI GATC 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 218
BstF5I GGATG 2 cut(s) 126, 460
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 2 cut(s) 60, 158
BstMBI GATC 1 cut(s) 345
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 89, 148
BstSFI CTRYAG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 126, 460
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 297, 318
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 263, 298
CviJI RGCY 4 cut(s) 87, 99, 328, 351
CviKI_1 RGCY 4 cut(s) 87, 99, 328, 351
CviQI GTAC 1 cut(s) 165
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 175
FaeI CATG 2 cut(s) 266, 301
FaiI YATR 5 cut(s) 264, 281, 299, 314, 401
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 262, 297
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 2 cut(s) 135, 457
FokI GGATG 2 cut(s) 113, 447
FspBI CTAG 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 2 cut(s) 90, 150
Hin1II CATG 2 cut(s) 266, 301
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 41, 60, 132, 141
HpaII CCGG 2 cut(s) 90, 150
HphI GGTGA 3 cut(s) 40, 68, 181
Hpy166II GTNNAC 5 cut(s) 136, 275, 295, 318, 458
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 23, 57, 384
Hpy8I GTNNAC 5 cut(s) 136, 275, 295, 318, 458
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 178, 428
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 221, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 266, 301
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 8, 93, 103, 163, 369, 402
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 222
MluCI AATT 1 cut(s) 222
MlyI GAGTC 4 cut(s) 50, 54, 141, 150
MnlI CCTC 9 cut(s) 19, 28, 100, 189, 197, 262, 365, 368, 415
MseI TTAA 1 cut(s) 330
MspI CCGG 2 cut(s) 90, 150
MspR9I CCNGG 2 cut(s) 91, 150
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 2 cut(s) 91, 150
NdeII GATC 1 cut(s) 345
NlaIII CATG 2 cut(s) 266, 301
NlaIV GGNNCC 2 cut(s) 88, 177
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 301
PciI ACATGT 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 442
PflFI GACNNNGTC 1 cut(s) 140
PleI GAGTC 4 cut(s) 49, 54, 140, 149
PpsI GAGTC 4 cut(s) 49, 54, 140, 149
PpuMI RGGWCCY 1 cut(s) 175
PscI ACATGT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 88, 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 4 cut(s) 50, 54, 141, 150
ScrFI CCNGG 2 cut(s) 91, 150
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 175
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 89, 148
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 58, 135, 144
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 222
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 297, 325
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 251, 255
TspRI CASTG 2 cut(s) 297, 325
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 2 cut(s) 135, 457
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.