Rh6DG001300

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007154
Physical Location & Seq
Reverse (-)
190377 .. 196156
5780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG001300.1

Sequence Viewer

Length: 711 bp
ATGAGCCCGGCAGTAGCAGCACCAACGGCAACAATAGCAGCAACTAATTTGGGAGGAGGAGCGGCAGGTCAGTTTGGGGACACGACGCACACCAAGGTGTTTGTTGGAGGACTGGCTTGGGAGACCCAGAAGGAGACCATGAAGAAATACTTTGAGCAGTTTGGTGACATCTTGGAGGCTGTTGTCATCACTGACAAGGCCACTGGCAGATCCAAGGGCTACGGATTTGTAACCTTTCGTGAAGCGGAAGCAGCGATGAGAGCTTGTGTCGATGCTGCCCCAGTGATAGATGGAAGGAGGGCCAACTGCAATCTTGCCTCTCTTGGTGTTCAGAGATCCAAGCCTTCTACTCCAAAGCATGGTGGAGGAGGAGGAGGAGGTAGGAACTTTAGGGTAATGGCGGGATCAATATTCCAAGCTGCAGGTGGAGTTGGAGTTGGAGTGGGATCGGGCTTTGCAGCAGCTTCTGCAGCAACCGCATTCCCAGCTCATCATCATTATGCCGCCATTCAACAAGGGATTCCAGCTGCTGCTGCTGCTGCTTACAATCTTTATGCCACCGCAGGGTACGACTACTATACTAACTATATATATATCGATCTTAATTCTTCATTCATCATCATCATCATCATATTGTGCAAGCTAGCTAATGGTTTTTGTACCCTCAACATCATATATAATTATATATATCTATTGATATATCTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

236

Amino Acids

24.63

Weight (kDa)

8.75

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 33 - 88 6.2e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 413
Acc36I ACCTGC 2 cut(s) 56, 413
AccB7I CCANNNNNTGG 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 6 cut(s) 62, 245, 401, 477, 504, 561
AclWI GGATC 4 cut(s) 204, 330, 412, 454
AfaI GTAC 2 cut(s) 569, 661
AfiI CCNNNNNNNGG 2 cut(s) 359, 564
AgsI TTSAA 1 cut(s) 512
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 7 cut(s) 263, 419, 464, 488, 527, 643, 647
AluI AGCT 7 cut(s) 263, 419, 464, 488, 527, 643, 647
Alw26I GTCTC 2 cut(s) 116, 128
AlwI GGATC 4 cut(s) 204, 330, 412, 454
AlwNI CAGNNNCTG 2 cut(s) 467, 530
AoxI GGCC 2 cut(s) 198, 300
AspS9I GGNCC 1 cut(s) 300
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 8
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 116, 128
BfaI CTAG 2 cut(s) 644, 709
BfmI CTRYAG 2 cut(s) 420, 468
BfuAI ACCTGC 2 cut(s) 56, 413
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 262
BmtI GCTAGC 1 cut(s) 647
BmuI ACTGGG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 597
BsaI GGTCTC 2 cut(s) 116, 128
BsaJI CCNNGG 2 cut(s) 93, 213
BsaXI ACNNNNNCTCC 4 cut(s) 420, 426, 450, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 564
Bse1I ACTGG 3 cut(s) 117, 208, 281
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 93, 213
BseLI CCNNNNNNNGG 2 cut(s) 359, 564
BseNI ACTGG 3 cut(s) 117, 208, 281
BseRI GAGGAG 6 cut(s) 69, 72, 381, 384, 387, 390
BseYI CCCAGC 1 cut(s) 484
BshFI GGCC 2 cut(s) 200, 302
BshVI ATCGAT 1 cut(s) 597
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 359, 564
BsmAI GTCTC 2 cut(s) 116, 128
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 2 cut(s) 200, 302
Bso31I GGTCTC 2 cut(s) 116, 128
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 209, 335, 404, 446, 598
BspACI CCGC 6 cut(s) 62, 245, 401, 477, 504, 561
BspANI GGCC 2 cut(s) 200, 302
BspDI ATCGAT 1 cut(s) 597
BspMAI CTGCAG 2 cut(s) 424, 472
BspMI ACCTGC 2 cut(s) 56, 413
BspOI GCTAGC 1 cut(s) 647
BspPI GGATC 4 cut(s) 204, 330, 412, 454
BspTNI GGTCTC 2 cut(s) 116, 128
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 3 cut(s) 117, 208, 281
BssECI CCNNGG 2 cut(s) 93, 213
BssMI GATC 5 cut(s) 209, 335, 404, 446, 598
BssT1I CCWWGG 2 cut(s) 93, 213
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 641, 645
BstKTI GATC 5 cut(s) 212, 338, 407, 449, 601
BstMAI GTCTC 2 cut(s) 116, 128
BstMBI GATC 5 cut(s) 209, 335, 404, 446, 598
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 2 cut(s) 420, 468
BstX2I RGATCY 2 cut(s) 209, 335
BstYI RGATCY 2 cut(s) 209, 335
Bsu15I ATCGAT 1 cut(s) 597
BsuRI GGCC 2 cut(s) 200, 302
BsuTUI ATCGAT 1 cut(s) 597
BtgZI GCGATG 1 cut(s) 269
BtsIMutI CAGTG 3 cut(s) 189, 201, 288
BveI ACCTGC 2 cut(s) 56, 413
Cac8I GCNNGC 2 cut(s) 641, 645
CaiI CAGNNNCTG 2 cut(s) 467, 530
Cfr13I GGNCC 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 568, 660
CviAII CATG 2 cut(s) 139, 359
CviQI GTAC 2 cut(s) 568, 660
DpnI GATC 5 cut(s) 211, 337, 406, 448, 600
DpnII GATC 5 cut(s) 209, 335, 404, 446, 598
Eco130I CCWWGG 2 cut(s) 93, 213
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 116, 128
EcoT14I CCWWGG 2 cut(s) 93, 213
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 93, 213
FaeI CATG 2 cut(s) 142, 362
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 138, 358
FauI CCCGC 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 644, 709
GsaI CCCAGC 1 cut(s) 488
HaeIII GGCC 2 cut(s) 200, 302
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 142, 362
HinfI GANTC 1 cut(s) 520
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 124, 288, 354
HpyCH4V TGCA 5 cut(s) 309, 422, 458, 470, 639
Hsp92II CATG 2 cut(s) 142, 362
Kzo9I GATC 5 cut(s) 209, 335, 404, 446, 598
LmnI GCTCC 1 cut(s) 59
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 644, 709
MaeIII GTNAC 2 cut(s) 164, 229
MalI GATC 5 cut(s) 211, 337, 406, 448, 600
MbiI CCGCTC 1 cut(s) 62
MboI GATC 5 cut(s) 209, 335, 404, 446, 598
MboII GAAGA 2 cut(s) 154, 600
MflI RGATCY 2 cut(s) 209, 335
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 46, 604, 679
MmeI TCCRAC 3 cut(s) 85, 412, 418
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 2 cut(s) 95, 498
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 479
NciI CCSGG 1 cut(s) 8
NdeII GATC 5 cut(s) 209, 335, 404, 446, 598
NheI GCTAGC 1 cut(s) 643
NlaIII CATG 2 cut(s) 142, 362
NmuCI GTSAC 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 413
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 300
PstI CTGCAG 2 cut(s) 424, 472
PstNI CAGNNNCTG 2 cut(s) 467, 530
PsuI RGATCY 2 cut(s) 209, 335
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 569, 661
RsaNI GTAC 2 cut(s) 568, 660
RseI CAYNNNNRTG 2 cut(s) 95, 498
SaqAI TTAA 1 cut(s) 603
Sau3AI GATC 5 cut(s) 209, 335, 404, 446, 598
Sau96I GGNCC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 2 cut(s) 420, 468
SmiMI CAYNNNNRTG 2 cut(s) 95, 498
Sse9I AATT 3 cut(s) 46, 604, 679
SsiI CCGC 6 cut(s) 62, 245, 401, 477, 504, 561
SspI AATATT 1 cut(s) 411
SspMI CTAG 2 cut(s) 644, 709
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 93, 213
TaqI TCGA 2 cut(s) 270, 597
TasI AATT 3 cut(s) 46, 604, 679
TauI GCSGC 2 cut(s) 65, 506
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 3 cut(s) 196, 208, 288
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 155, 600, 604
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 3 cut(s) 196, 208, 288
Van91I CCANNNNNTGG 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XspI CTAG 2 cut(s) 644, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.