Rw6G000270

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007154
Physical Location & Seq
Reverse (-)
564445 .. 569158
4714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000270.1

Sequence Viewer

Length: 927 bp
ATGAGCCCGGCAGTAGCAGCACCAACGGCAACAATAGCAGCAACTAATTTGGGAGGAGGAGCGGCAGGTCAGTTTGGGGACACGACGTACACCAAGGTGTTTGTTGGAGGACTGGCTTGGGAGACCCAGAAGGAGACCATGAAGAAATACTTTGAGCAGTTTGGTGACATCTTGGAGGCTGTTGTTATCACTGACAAGGCCACCGGCAGATCCAAGGGCTACGGATTTGTAACCTTTCGTGAATCGGAAGCAGCGATGAGAGCTTGTGTCGATGCTGCCCCAGTGATAGATGGAAGGAGGGCCAACTGCAATCTTGCCTCTCTTGGTGTTCAGAGATCCAAGCCTTCTACTCCAAAGCATGGTGGAGGAGGAGGAGGTAGGAACTTTAGGGTAATGGCGGGATCAATATTCCAAGCTGCAGGTGGAGTTGGAGTTGGAGTGGGATCGGGCTTTGCAGGGGCTTCTGCAGCAACCGCATTCCCAGCTCATCATCATTATGCCGCCATTCAACAAGGGATTCCAGCTGCTGCTGCTGCTGCTTACAATCTTTATGCCACCGCGGGGTACTCTCCATACTCGCCAGACTACACTTACCCTACGAACTACTACGGTCTGTACGGAGGTGGAGCAACAAGCCAATATCCAGTGTATGGAACGGGCGGGATGCTGACGGGAGGAGCTGCGGCAGCAGCTTTTTACCCATATCTTCAATACGGAGAAGCAGCGAATGGAGGTGCCGCTGCCTATACTACTTCTGGGGCACAGAATGTTGGCTATGGTGGCATCCAATACCCACACCATCATCATAATCTCTATCAGTATTCAGCTGCTGGACTAGGAGGCTACCAGCACTATGCTCCTTCCATGTCTCTTGCACCCTCACCTGCCTTGCAATCACCAGTGTGTTTTGCTGTGCCACAGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

308

Amino Acids

31.42

Weight (kDa)

8.58

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 33 - 88 4.9e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 410, 892
Acc36I ACCTGC 3 cut(s) 56, 410, 892
AccB1I GGYRCC 1 cut(s) 734
AccB7I CCANNNNNTGG 2 cut(s) 359, 650
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 560
AciI CCGC 9 cut(s) 62, 398, 474, 501, 558, 560, 660, 683, 738
AclWI GGATC 4 cut(s) 204, 330, 409, 451
AfaI GTAC 3 cut(s) 89, 566, 617
AfiI CCNNNNNNNGG 3 cut(s) 359, 561, 650
AgsI TTSAA 2 cut(s) 509, 710
AleI CACNNNNGTG 2 cut(s) 95, 901
AluBI AGCT 7 cut(s) 263, 416, 485, 524, 680, 692, 827
AluI AGCT 7 cut(s) 263, 416, 485, 524, 680, 692, 827
Alw26I GTCTC 3 cut(s) 116, 128, 873
AlwI GGATC 4 cut(s) 204, 330, 409, 451
AlwNI CAGNNNCTG 2 cut(s) 527, 830
AoxI GGCC 2 cut(s) 198, 300
AspS9I GGNCC 1 cut(s) 300
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 176, 873, 888
BaeGI GKGCMC 1 cut(s) 763
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 1 cut(s) 8
BccI CCATC 2 cut(s) 284, 807
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 3 cut(s) 116, 128, 873
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 2 cut(s) 417, 465
BfuAI ACCTGC 3 cut(s) 56, 410, 892
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 262, 654, 792
BmuI ACTGGG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 8
BsaI GGTCTC 2 cut(s) 116, 128
BsaJI CCNNGG 3 cut(s) 93, 213, 558
BsaXI ACNNNNNCTCC 4 cut(s) 417, 423, 447, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 561, 650
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 4 cut(s) 117, 281, 644, 899
BseDI CCNNGG 3 cut(s) 93, 213, 558
BseGI GGATG 2 cut(s) 669, 783
BseLI CCNNNNNNNGG 3 cut(s) 359, 561, 650
BseNI ACTGG 4 cut(s) 117, 281, 644, 899
BseRI GAGGAG 6 cut(s) 69, 72, 381, 384, 387, 690
BseSI GKGCMC 1 cut(s) 763
BseYI CCCAGC 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 2 cut(s) 200, 302
BshNI GGYRCC 1 cut(s) 734
BsiSI CCGG 2 cut(s) 8, 204
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 3 cut(s) 359, 561, 650
BsmAI GTCTC 3 cut(s) 116, 128, 873
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 200, 302
Bso31I GGTCTC 2 cut(s) 116, 128
Bsp1286I GDGCHC 2 cut(s) 8, 763
Bsp143I GATC 4 cut(s) 209, 335, 401, 443
BspACI CCGC 9 cut(s) 62, 398, 474, 501, 558, 560, 660, 683, 738
BspANI GGCC 2 cut(s) 200, 302
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 1 cut(s) 736
BspMAI CTGCAG 2 cut(s) 421, 469
BspMI ACCTGC 3 cut(s) 56, 410, 892
BspPI GGATC 4 cut(s) 204, 330, 409, 451
BspT107I GGYRCC 1 cut(s) 734
BspTNI GGTCTC 2 cut(s) 116, 128
BsrBI CCGCTC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 4 cut(s) 117, 281, 644, 899
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 93, 213, 558
BssMI GATC 4 cut(s) 209, 335, 401, 443
BssT1I CCWWGG 2 cut(s) 93, 213
Bst4CI ACNGT 1 cut(s) 611
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 669, 783
BstFNI CGCG 1 cut(s) 560
BstKTI GATC 4 cut(s) 212, 338, 404, 446
BstMAI GTCTC 3 cut(s) 116, 128, 873
BstMBI GATC 4 cut(s) 209, 335, 401, 443
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 2 cut(s) 417, 465
BstSLI GKGCMC 1 cut(s) 763
BstUI CGCG 1 cut(s) 560
BstX2I RGATCY 2 cut(s) 209, 335
BstYI RGATCY 2 cut(s) 209, 335
BsuRI GGCC 2 cut(s) 200, 302
BtgI CCRYGG 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 2 cut(s) 669, 783
BtsIMutI CAGTG 4 cut(s) 189, 288, 651, 906
BveI ACCTGC 3 cut(s) 56, 410, 892
CaiI CAGNNNCTG 2 cut(s) 527, 830
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 300
Cfr42I CCGCGG 1 cut(s) 561
Csp6I GTAC 3 cut(s) 88, 565, 616
CviAII CATG 3 cut(s) 139, 359, 865
CviQI GTAC 3 cut(s) 88, 565, 616
DpnI GATC 4 cut(s) 211, 337, 403, 445
DpnII GATC 4 cut(s) 209, 335, 401, 443
Eco130I CCWWGG 2 cut(s) 93, 213
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 116, 128
EcoT14I CCWWGG 2 cut(s) 93, 213
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 93, 213
FaeI CATG 3 cut(s) 142, 362, 868
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 138, 358, 864
FauI CCCGC 3 cut(s) 391, 553, 653
FokI GGATG 2 cut(s) 676, 770
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 1 cut(s) 836
GsaI CCCAGC 1 cut(s) 485
HaeIII GGCC 2 cut(s) 200, 302
HapII CCGG 2 cut(s) 8, 204
Hin1II CATG 3 cut(s) 142, 362, 868
HinfI GANTC 2 cut(s) 242, 517
HpaII CCGG 2 cut(s) 8, 204
HphI GGTGA 3 cut(s) 176, 873, 888
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 2 cut(s) 247, 333
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 4 cut(s) 124, 288, 354, 870
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 6 cut(s) 309, 419, 455, 467, 875, 892
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 3 cut(s) 142, 362, 868
KspI CCGCGG 1 cut(s) 561
Kzo9I GATC 4 cut(s) 209, 335, 401, 443
LmnI GCTCC 4 cut(s) 59, 626, 677, 862
LweI GCATC 3 cut(s) 262, 654, 792
MaeI CTAG 1 cut(s) 836
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 164, 229
MalI GATC 4 cut(s) 211, 337, 403, 445
MbiI CCGCTC 1 cut(s) 62
MboI GATC 4 cut(s) 209, 335, 401, 443
MboII GAAGA 2 cut(s) 154, 698
MflI RGATCY 2 cut(s) 209, 335
MhlI GDGCHC 2 cut(s) 8, 763
MluCI AATT 1 cut(s) 46
MmeI TCCRAC 3 cut(s) 85, 409, 415
MslI CAYNNNNRTG 3 cut(s) 95, 495, 901
MspA1I CMGCKG 4 cut(s) 524, 560, 740, 827
MspI CCGG 2 cut(s) 8, 204
MspR9I CCNGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 476
MvnI CGCG 1 cut(s) 560
NciI CCSGG 1 cut(s) 8
NdeII GATC 4 cut(s) 209, 335, 401, 443
NlaIII CATG 3 cut(s) 142, 362, 868
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 1 cut(s) 164
OliI CACNNNNGTG 2 cut(s) 95, 901
PaqCI CACCTGC 2 cut(s) 410, 892
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 242, 517
PflMI CCANNNNNTGG 2 cut(s) 359, 650
PspFI CCCAGC 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 1 cut(s) 300
PstI CTGCAG 2 cut(s) 421, 469
PstNI CAGNNNCTG 2 cut(s) 527, 830
PsuI RGATCY 2 cut(s) 209, 335
PvuII CAGCTG 2 cut(s) 524, 827
RsaI GTAC 3 cut(s) 89, 566, 617
RsaNI GTAC 3 cut(s) 88, 565, 616
RseI CAYNNNNRTG 3 cut(s) 95, 495, 901
SacII CCGCGG 1 cut(s) 561
Sau3AI GATC 4 cut(s) 209, 335, 401, 443
Sau96I GGNCC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 2 cut(s) 8, 763
SfaNI GCATC 3 cut(s) 262, 654, 792
SfcI CTRYAG 2 cut(s) 417, 465
Sfr303I CCGCGG 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 561
SmiMI CAYNNNNRTG 3 cut(s) 95, 495, 901
Sse9I AATT 1 cut(s) 46
SsiI CCGC 9 cut(s) 62, 398, 474, 501, 558, 560, 660, 683, 738
SspI AATATT 1 cut(s) 408
SspMI CTAG 1 cut(s) 836
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 93, 213
TaaI ACNGT 1 cut(s) 611
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 270
TasI AATT 1 cut(s) 46
TauI GCSGC 4 cut(s) 65, 503, 686, 740
TfiI GAWTC 2 cut(s) 242, 517
TscAI CASTG 4 cut(s) 196, 288, 651, 906
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 3 cut(s) 237, 633, 729
TspRI CASTG 4 cut(s) 196, 288, 651, 906
Van91I CCANNNNNTGG 2 cut(s) 359, 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XspI CTAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.