Prupe.8G001400_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007154
Physical Location & Seq
Reverse (-)
121420 .. 126875
5456 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G001400.2

Sequence Viewer

Length: 876 bp
ATGACTCCAGCTAATTTGGCAGGGCAGTTTGGTGATACCACATACACCAAGGTGTTTGTTGGAGGATTGGCTTGGGAAACCCAGAAGGAAACCATGAAGAAATACTTTGAACAGTTCGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAGGCCACCGGCAGATCAAAAGGCTACGGATTTGTAACTTTTCGCGAATCCGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATTGATGGGAGGAGGGCCAACTGCAATCTTGCTTCTCTGGGAGTTCAGAGATCCAAGCCTTCAACTCCAAAGCATGGTGGTGGAGGAGCAGGTAGGAACTTTAGGGTAATGGGGTCTTTCCAAACAGGGTTCGGAGGAGGTGGAGTTGGATCAGCTTTTCCTTCTGCAGCAGCAACCTTCCCTCATTATGCCATCCAACAAGGGATACCTTACAATCTTTATGGGTACTCTCCATACTCACCAGACTACACTTACCCTACGAACTACTATGGTTTGTATGGAGGGACAACCGGGCAGTATCCTATGTACGGGACAAGCCCTGCAGGCGGAATGGTGACGGGAGCTGCCGCGGCTGCAGCTGCGTTTTACCCGTATCTGCAATACGGATCAGAAGGGAATGGAGGAGCTGCAGCAGCAGCAGCTTATAGTACTACTTCAGGTGTGCAGAACTACGCAACTGGTGTCCAATATCCACACCACCACCACCACCACCTGTTCCAGTATTCGGCCTTGAATTCAACTGGTGTTGGAGGAGGCTACCAGCACTATGGTCCTCCCATTTCTCTTGCGCCCTCACCCGCCTTGCAATCGCCAGGCGTAACCATGGCCCTCCCTGCACCAATTCCTCATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

292

Amino Acids

30.47

Weight (kDa)

8.86

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 314
AccII CGCG 2 cut(s) 195, 590
AciI CCGC 4 cut(s) 567, 588, 590, 819
AclWI GGATC 3 cut(s) 285, 397, 634
AcsI RAATTY 1 cut(s) 754
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 3 cut(s) 467, 548, 670
AfiI CCNNNNNNNGG 4 cut(s) 314, 548, 566, 745
AgsI TTSAA 4 cut(s) 110, 303, 754, 759
AjnI CCWGG 1 cut(s) 832
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 8 cut(s) 11, 206, 218, 395, 584, 599, 647, 662
AluI AGCT 8 cut(s) 11, 206, 218, 395, 584, 599, 647, 662
AlwI GGATC 3 cut(s) 285, 397, 634
AoxI GGCC 4 cut(s) 153, 255, 747, 846
ApoI RAATTY 1 cut(s) 754
AspLEI GCGC 1 cut(s) 811
AspS9I GGNCC 3 cut(s) 255, 791, 847
AsuC2I CCSGG 1 cut(s) 532
AsuHPI GGTGA 5 cut(s) 44, 131, 471, 586, 807
AvaII GGWCC 1 cut(s) 791
BccI CCATC 2 cut(s) 239, 440
BciT130I CCWGG 1 cut(s) 834
BciVI GTATCC 2 cut(s) 438, 549
BcnI CCSGG 1 cut(s) 532
BfaI CTAG 1 cut(s) 874
BfmI CTRYAG 4 cut(s) 405, 561, 594, 648
BfuAI ACCTGC 1 cut(s) 320
BfuI GTATCC 2 cut(s) 438, 549
BglI GCCNNNNNGGC 1 cut(s) 564
BglII AGATCT 1 cut(s) 123
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 2 cut(s) 532, 834
Bme18I GGWCC 1 cut(s) 791
BmgT120I GGNCC 3 cut(s) 255, 791, 847
BmrFI CCNGG 2 cut(s) 532, 834
BmsI GCATC 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 48, 588, 843
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 548, 566, 745
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 703, 739, 766
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 3 cut(s) 48, 588, 843
BseGI GGATG 2 cut(s) 232, 432
BseLI CCNNNNNNNGG 4 cut(s) 314, 548, 566, 745
BseNI ACTGG 3 cut(s) 703, 739, 766
BseRI GAGGAG 5 cut(s) 265, 339, 390, 657, 786
BsgI GTGCAG 2 cut(s) 704, 840
Bsh1236I CGCG 2 cut(s) 195, 590
BshFI GGCC 4 cut(s) 155, 257, 749, 848
BsiSI CCGG 2 cut(s) 159, 531
BslFI GGGAC 2 cut(s) 538, 565
BslI CCNNNNNNNGG 4 cut(s) 314, 548, 566, 745
BsmFI GGGAC 2 cut(s) 538, 565
BsnI GGCC 4 cut(s) 155, 257, 749, 848
Bsp143I GATC 5 cut(s) 123, 164, 290, 389, 626
Bsp19I CCATGG 1 cut(s) 843
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 4 cut(s) 567, 588, 590, 819
BspANI GGCC 4 cut(s) 155, 257, 749, 848
BspFNI CGCG 2 cut(s) 195, 590
BspMAI CTGCAG 4 cut(s) 409, 565, 598, 652
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 3 cut(s) 285, 397, 634
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 3 cut(s) 703, 739, 766
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 48, 588, 843
BssMI GATC 5 cut(s) 123, 164, 290, 389, 626
BssT1I CCWWGG 2 cut(s) 48, 843
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 565
BstDSI CCRYGG 2 cut(s) 588, 843
BstF5I GGATG 2 cut(s) 232, 432
BstFNI CGCG 2 cut(s) 195, 590
BstHHI GCGC 1 cut(s) 811
BstKTI GATC 5 cut(s) 126, 167, 293, 392, 629
BstMBI GATC 5 cut(s) 123, 164, 290, 389, 626
BstNI CCWGG 1 cut(s) 834
BstSCI CCNGG 2 cut(s) 530, 832
BstSFI CTRYAG 4 cut(s) 405, 561, 594, 648
BstUI CGCG 2 cut(s) 195, 590
BstX2I RGATCY 2 cut(s) 123, 290
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 2 cut(s) 123, 290
BsuI GTATCC 2 cut(s) 438, 549
BsuRI GGCC 4 cut(s) 155, 257, 749, 848
BtgI CCRYGG 2 cut(s) 588, 843
BtgZI GCGATG 1 cut(s) 854
BtsCI GGATG 2 cut(s) 232, 432
BtsIMutI CAGTG 1 cut(s) 144
BtuMI TCGCGA 1 cut(s) 195
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 565
CfoI GCGC 1 cut(s) 811
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 255, 791, 847
Cfr42I CCGCGG 1 cut(s) 591
Csp6I GTAC 3 cut(s) 466, 547, 669
CviAII CATG 4 cut(s) 94, 211, 314, 844
CviQI GTAC 3 cut(s) 466, 547, 669
DpnI GATC 5 cut(s) 125, 166, 292, 391, 628
DpnII GATC 5 cut(s) 123, 164, 290, 389, 626
EciI GGCGGA 1 cut(s) 582
Eco130I CCWWGG 2 cut(s) 48, 843
Eco47I GGWCC 1 cut(s) 791
Eco57I CTGAAG 1 cut(s) 660
EcoRI GAATTC 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 832
EcoT14I CCWWGG 2 cut(s) 48, 843
ErhI CCWWGG 2 cut(s) 48, 843
FaeI CATG 4 cut(s) 97, 214, 317, 847
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 2 cut(s) 538, 565
FatI CATG 4 cut(s) 93, 210, 313, 843
FauI CCCGC 1 cut(s) 826
FokI GGATG 2 cut(s) 239, 419
FspBI CTAG 1 cut(s) 874
GlaI GCGC 1 cut(s) 810
HaeIII GGCC 4 cut(s) 155, 257, 749, 848
HapII CCGG 2 cut(s) 159, 531
HhaI GCGC 1 cut(s) 811
Hin1II CATG 4 cut(s) 97, 214, 317, 847
Hin6I GCGC 1 cut(s) 809
HinP1I GCGC 1 cut(s) 809
HinfI GANTC 2 cut(s) 4, 197
HpaII CCGG 2 cut(s) 159, 531
HphI GGTGA 5 cut(s) 44, 131, 471, 586, 807
Hpy188I TCNGA 4 cut(s) 202, 288, 374, 631
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 5 cut(s) 79, 309, 411, 427, 626
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 9 cut(s) 264, 407, 563, 596, 619, 650, 685, 826, 857
Hsp92II CATG 4 cut(s) 97, 214, 317, 847
HspAI GCGC 1 cut(s) 809
KspI CCGCGG 1 cut(s) 591
Kzo9I GATC 5 cut(s) 123, 164, 290, 389, 626
LmnI GCTCC 4 cut(s) 238, 326, 581, 644
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 874
MaeIII GTNAC 3 cut(s) 184, 574, 838
MalI GATC 5 cut(s) 125, 166, 292, 391, 628
MboI GATC 5 cut(s) 123, 164, 290, 389, 626
MboII GAAGA 1 cut(s) 109
MflI RGATCY 2 cut(s) 123, 290
MluCI AATT 3 cut(s) 13, 754, 861
MmeI TCCRAC 4 cut(s) 40, 367, 460, 748
MslI CAYNNNNRTG 2 cut(s) 50, 318
MspA1I CMGCKG 2 cut(s) 590, 599
MspI CCGG 2 cut(s) 159, 531
MspR9I CCNGG 2 cut(s) 532, 834
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 2 cut(s) 195, 590
NciI CCSGG 1 cut(s) 532
NcoI CCATGG 1 cut(s) 843
NdeII GATC 5 cut(s) 123, 164, 290, 389, 626
NlaIII CATG 4 cut(s) 97, 214, 317, 847
NmuCI GTSAC 1 cut(s) 574
NruI TCGCGA 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 50
PfeI GAWTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspPI GGNCC 3 cut(s) 255, 791, 847
PstI CTGCAG 4 cut(s) 409, 565, 598, 652
PsuI RGATCY 2 cut(s) 123, 290
PvuII CAGCTG 1 cut(s) 599
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 3 cut(s) 467, 548, 670
RsaNI GTAC 3 cut(s) 466, 547, 669
RseI CAYNNNNRTG 2 cut(s) 50, 318
SacII CCGCGG 1 cut(s) 591
Sau3AI GATC 5 cut(s) 123, 164, 290, 389, 626
Sau96I GGNCC 3 cut(s) 255, 791, 847
SbfI CCTGCAGG 1 cut(s) 565
ScaI AGTACT 1 cut(s) 670
ScrFI CCNGG 2 cut(s) 532, 834
SdaI CCTGCAGG 1 cut(s) 565
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 4 cut(s) 405, 561, 594, 648
Sfr303I CCGCGG 1 cut(s) 591
SgrBI CCGCGG 1 cut(s) 591
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 2 cut(s) 50, 318
Sse8387I CCTGCAGG 1 cut(s) 565
Sse9I AATT 3 cut(s) 13, 754, 861
SsiI CCGC 4 cut(s) 567, 588, 590, 819
SspMI CTAG 1 cut(s) 874
StyD4I CCNGG 2 cut(s) 530, 832
StyI CCWWGG 2 cut(s) 48, 843
TaaI ACNGT 1 cut(s) 114
TasI AATT 3 cut(s) 13, 754, 861
TatI WGTACW 1 cut(s) 668
TauI GCSGC 2 cut(s) 590, 593
TfiI GAWTC 1 cut(s) 197
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 574
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 2 cut(s) 192, 639
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 791
XapI RAATTY 1 cut(s) 754
XspI CTAG 1 cut(s) 874
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.