MD00G1161300.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0007154
Physical Location & Seq
Forward (+)
35857504 .. 35864060
6557 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1161300.v1.1.491

Sequence Viewer

Length: 858 bp
ATGACTCCAGCTAATCTGGCAGGGCAGTTTGGCGACACGACTTACACCAAGGTGTTTGTTGGCGGGTTGGCATGGGAAACCCAGAAGGAAACCATGAAGAAATACTTTGAACAGTTTGGTGACATCTTGGAGGCTGTTGTTATCACTGATAAGGCCACTGGGAGATCTAAGGGCTACGGATTTGTAACTTTTCGCGAAGCCGAAGCTGCGATGAGGGCTTGTGTGGATGCTGCTCCCGTGATTGATGGGAGGAGGGCTAACTGCAACCTTGCTTCTCTCGGTGTTCAGAGATCCAAGCCTTCAACTCCAAAGCATGGTGGAGGGGGGGGAGGCAGGAGCTTTGGGAGGGTAATGGGGCCATTCCAAACAGGGTTTGGAGGAGTGGGATCAGCTTTTCCCTCTGCGGCAACCTTCCCTCATTATGCCATCCAACAAGGGATACCTTACAATCTTTATGGGTACTCTTCATACTCGCCAGACTACACTTATCCTACGAACTACTATGGTTTGTATGGAGGGGCAGCAGGCCAGTATCCTATGTACGGAACAAGCCCTGCAACTGGGATGGTGGCCGGAGCAGCAGCGGCGGCGGCGGCATTTTACCCCTATCTTTCATATGGATCAGAAGGGAATGGAGGAGCCGCAGCAGGTGCGTATGGTAGCTCAGGTGTGCCGAGCTATGCAACTGGTGTCCAATACCCCCACCAGCAGCAGCAGCTTTTTCAGTATTCGACCATGAATTCAAGTGGAGTTGGAGGCTACCAGCACTATGGTCCTCCCATTTCTCTTGCGCCCTCGCCCGCCTTGCAGTCACCAGGCGTAACCGTGGCCCTTCCTGCACCAATTCCTCATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

286

Amino Acids

29.66

Weight (kDa)

8.86

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 73 8.6e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 638
Acc36I ACCTGC 1 cut(s) 638
AccB7I CCANNNNNTGG 1 cut(s) 314
AccII CGCG 1 cut(s) 195
AciI CCGC 8 cut(s) 63, 404, 584, 587, 590, 593, 642, 801
AclWI GGATC 3 cut(s) 285, 394, 628
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 1 cut(s) 739
AfaI GTAC 2 cut(s) 461, 542
AfiI CCNNNNNNNGG 3 cut(s) 314, 542, 560
AgsI TTSAA 3 cut(s) 110, 303, 744
AjnI CCWGG 1 cut(s) 814
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 7 cut(s) 11, 206, 339, 392, 663, 678, 718
AluI AGCT 7 cut(s) 11, 206, 339, 392, 663, 678, 718
AlwI GGATC 3 cut(s) 285, 394, 628
AoxI GGCC 5 cut(s) 153, 356, 526, 570, 828
ApeKI GCWGC 9 cut(s) 206, 230, 521, 578, 581, 644, 709, 712, 715
ApoI RAATTY 1 cut(s) 739
AspLEI GCGC 1 cut(s) 793
AspS9I GGNCC 3 cut(s) 356, 773, 829
AsuHPI GGTGA 2 cut(s) 131, 804
AvaII GGWCC 1 cut(s) 773
BbvI GCAGC 9 cut(s) 193, 217, 533, 590, 593, 656, 721, 724, 727
BccI CCATC 3 cut(s) 239, 434, 559
BciT130I CCWGG 1 cut(s) 816
BciVI GTATCC 2 cut(s) 432, 543
BfaI CTAG 1 cut(s) 856
BfuAI ACCTGC 1 cut(s) 638
BfuI GTATCC 2 cut(s) 432, 543
BglII AGATCT 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 1 cut(s) 773
BmgT120I GGNCC 3 cut(s) 356, 773, 829
BmiI GGNNCC 2 cut(s) 357, 640
BmrFI CCNGG 1 cut(s) 816
BmrI ACTGGG 2 cut(s) 168, 570
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 2 cut(s) 168, 570
Bpu10I CCTNAGC 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 48, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 542, 560
Bse1I ACTGG 4 cut(s) 163, 529, 565, 691
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 2 cut(s) 48, 825
BseGI GGATG 3 cut(s) 232, 426, 570
BseLI CCNNNNNNNGG 3 cut(s) 314, 542, 560
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 4 cut(s) 163, 529, 565, 691
BseRI GAGGAG 3 cut(s) 265, 393, 651
BseXI GCAGC 9 cut(s) 193, 217, 533, 590, 593, 656, 721, 724, 727
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 5 cut(s) 155, 358, 528, 572, 830
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 3 cut(s) 314, 542, 560
BsnI GGCC 5 cut(s) 155, 358, 528, 572, 830
Bsp143I GATC 4 cut(s) 164, 290, 386, 620
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 8 cut(s) 63, 404, 584, 587, 590, 593, 642, 801
BspANI GGCC 5 cut(s) 155, 358, 528, 572, 830
BspCNI CTCAG 1 cut(s) 677
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 357, 640
BspMI ACCTGC 1 cut(s) 638
BspPI GGATC 3 cut(s) 285, 394, 628
BsrI ACTGG 4 cut(s) 163, 529, 565, 691
BssECI CCNNGG 2 cut(s) 48, 825
BssMI GATC 4 cut(s) 164, 290, 386, 620
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 2 cut(s) 114, 826
Bst6I CTCTTC 1 cut(s) 469
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 526, 801
BstDEI CTNAG 2 cut(s) 168, 664
BstDSI CCRYGG 1 cut(s) 825
BstF5I GGATG 3 cut(s) 232, 426, 570
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 793
BstKTI GATC 4 cut(s) 167, 293, 389, 623
BstMBI GATC 4 cut(s) 164, 290, 386, 620
BstNI CCWGG 1 cut(s) 816
BstSCI CCNGG 1 cut(s) 814
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 9 cut(s) 193, 217, 533, 590, 593, 656, 721, 724, 727
BstX2I RGATCY 2 cut(s) 164, 290
BstXI CCANNNNNNTGG 1 cut(s) 770
BstYI RGATCY 2 cut(s) 164, 290
BsuI GTATCC 2 cut(s) 432, 543
BsuRI GGCC 5 cut(s) 155, 358, 528, 572, 830
BtgI CCRYGG 1 cut(s) 825
BtgZI GCGATG 2 cut(s) 224, 836
BtsCI GGATG 3 cut(s) 232, 426, 570
BtsIMutI CAGTG 2 cut(s) 144, 156
BtuMI TCGCGA 1 cut(s) 195
BveI ACCTGC 1 cut(s) 638
Cac8I GCNNGC 2 cut(s) 526, 801
CfoI GCGC 1 cut(s) 793
Cfr13I GGNCC 3 cut(s) 356, 773, 829
Csp6I GTAC 2 cut(s) 460, 541
CviAII CATG 4 cut(s) 72, 94, 314, 736
CviQI GTAC 2 cut(s) 460, 541
DdeI CTNAG 2 cut(s) 168, 664
DpnI GATC 4 cut(s) 166, 292, 388, 622
DpnII GATC 4 cut(s) 164, 290, 386, 620
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 739
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 4 cut(s) 75, 97, 317, 739
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 4 cut(s) 71, 93, 313, 735
FauI CCCGC 2 cut(s) 56, 808
FauNDI CATATG 1 cut(s) 616
FokI GGATG 3 cut(s) 239, 413, 577
FspBI CTAG 1 cut(s) 856
GlaI GCGC 1 cut(s) 792
HaeIII GGCC 5 cut(s) 155, 358, 528, 572, 830
HapII CCGG 1 cut(s) 573
HhaI GCGC 1 cut(s) 793
Hin1II CATG 4 cut(s) 75, 97, 317, 739
Hin6I GCGC 1 cut(s) 791
HinP1I GCGC 1 cut(s) 791
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 573
HphI GGTGA 2 cut(s) 131, 804
Hpy188I TCNGA 2 cut(s) 288, 625
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 5 cut(s) 79, 309, 421, 620, 842
HpyCH4III ACNGT 2 cut(s) 114, 826
HpyCH4V TGCA 5 cut(s) 264, 557, 683, 808, 839
HpyF3I CTNAG 2 cut(s) 168, 664
Hsp92II CATG 4 cut(s) 75, 97, 317, 739
HspAI GCGC 1 cut(s) 791
Kzo9I GATC 4 cut(s) 164, 290, 386, 620
LmnI GCTCC 4 cut(s) 238, 336, 575, 638
Lsp1109I GCAGC 9 cut(s) 193, 217, 533, 590, 593, 656, 721, 724, 727
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 856
MaeIII GTNAC 4 cut(s) 119, 184, 810, 820
MalI GATC 4 cut(s) 166, 292, 388, 622
MboI GATC 4 cut(s) 164, 290, 386, 620
MboII GAAGA 2 cut(s) 109, 456
MflI RGATCY 2 cut(s) 164, 290
MluCI AATT 2 cut(s) 739, 843
MmeI TCCRAC 2 cut(s) 454, 733
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 1 cut(s) 816
MvaI CCWGG 1 cut(s) 816
MvnI CGCG 1 cut(s) 195
NdeI CATATG 1 cut(s) 616
NdeII GATC 4 cut(s) 164, 290, 386, 620
NlaIII CATG 4 cut(s) 75, 97, 317, 739
NlaIV GGNNCC 2 cut(s) 357, 640
NmeAIII GCCGAG 1 cut(s) 699
NmuCI GTSAC 2 cut(s) 119, 810
NruI TCGCGA 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 50
PaqCI CACCTGC 1 cut(s) 638
PflMI CCANNNNNTGG 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 814
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 2 cut(s) 357, 640
PspPI GGNCC 3 cut(s) 356, 773, 829
PsuI RGATCY 2 cut(s) 164, 290
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 2 cut(s) 461, 542
RsaNI GTAC 2 cut(s) 460, 541
RseI CAYNNNNRTG 1 cut(s) 50
Sau3AI GATC 4 cut(s) 164, 290, 386, 620
Sau96I GGNCC 3 cut(s) 356, 773, 829
ScrFI CCNGG 1 cut(s) 816
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 2 cut(s) 739, 843
SsiI CCGC 8 cut(s) 63, 404, 584, 587, 590, 593, 642, 801
SspMI CTAG 1 cut(s) 856
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 114, 826
TaqI TCGA 1 cut(s) 731
TasI AATT 2 cut(s) 739, 843
TauI GCSGC 6 cut(s) 407, 587, 590, 593, 596, 644
TscAI CASTG 2 cut(s) 151, 163
TseFI GTSAC 2 cut(s) 119, 810
TseI GCWGC 9 cut(s) 206, 230, 521, 578, 581, 644, 709, 712, 715
Tsp45I GTSAC 2 cut(s) 119, 810
TspDTI ATGAA 4 cut(s) 110, 456, 603, 752
TspGWI ACGGA 2 cut(s) 192, 558
TspRI CASTG 2 cut(s) 151, 163
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 773
XapI RAATTY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XspI CTAG 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.