AT1G33470

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007154
Physical Location & Seq
Forward (+)
12144440 .. 12147208
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33470.1

Sequence Viewer

Length: 738 bp
ATGGAAGACACAACATTTACCAAAGTGTTCGTTGGAGGATTAGCTTGGGAAACACACAAAGTCTCTCTCAGGAATTACTTTGAACAGTTTGGTGACATTGTTGAAGCTGTCGTTATCACTGATAAATCTAGTGGTAGATCTAAAGGCTATGGCTTTGTTACTTTTTGTGATCCGGAAGCAGCTCAGAAAGCTTGTGTAGATCCAGCTCCTGTTATTGATGGAAGAAGAGCTAATTGTAATCTTGCTGCTTTTGGTGTTCAGAGATCCAAACCTTCTTCTCCTATTCATGGACATGTAGGAGGAAGAGGCATGAAGGTGACTAGCCCTTTCAAGACACACTTTGGGACCGCGGCTACTGCTATTCCTTCCCCACTTCCATTCTCCCACTACACACTTCCTTACACTAATCCTTTTGGGTTCTCTTCATACTCAATGGATTACAATTACCCCACGCAGAGCTATTACAATGTTTATGGAGGGGCAACTGCTCAGCATCCAATGTATGGAAGCGGACCAATGACTGGTGTAGCAGCAGCACCAGCAGCAGGGTTCTACCCATATCTCCAGTTTGCTGAAGGAAATGGACCTGTCACTGGTTATGCTCCCCTCCACTACCCCAACCACATGTTTCACTATTCTGCTCCCGGGGGAAACTACCCGCATCACAATGGTTCACCAGTGTCTCTTGCACCTTCACCAGTCATACCATCAGTTTGCTTTGCAGTTCCACAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

245

Amino Acids

26.23

Weight (kDa)

7.74

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 64 2.4e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 503, 521
AccII CGCG 1 cut(s) 350
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 4 cut(s) 348, 350, 510, 659
AclWI GGATC 3 cut(s) 164, 194, 258
AcuI CTGAAG 1 cut(s) 594
AfiI CCNNNNNNNGG 5 cut(s) 287, 503, 521, 545, 593
AflIII ACRYGT 2 cut(s) 292, 624
AgsI TTSAA 3 cut(s) 83, 104, 331
AluBI AGCT 7 cut(s) 44, 107, 182, 191, 206, 230, 459
AluI AGCT 7 cut(s) 44, 107, 182, 191, 206, 230, 459
Alw26I GTCTC 2 cut(s) 67, 687
AlwI GGATC 3 cut(s) 164, 194, 258
AlwNI CAGNNNCTG 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 644
Aor13HI TCCGGA 1 cut(s) 172
ApeKI GCWGC 5 cut(s) 179, 245, 530, 533, 542
AspS9I GGNCC 3 cut(s) 345, 512, 584
AsuC2I CCSGG 2 cut(s) 645, 646
AsuHPI GGTGA 4 cut(s) 104, 328, 666, 687
AvaI CYCGRG 1 cut(s) 644
AvaII GGWCC 3 cut(s) 345, 512, 584
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 5 cut(s) 191, 232, 542, 545, 554
BccI CCATC 2 cut(s) 212, 715
BcnI CCSGG 2 cut(s) 645, 646
BcoDI GTCTC 2 cut(s) 67, 687
BfaI CTAG 2 cut(s) 129, 321
BglII AGATCT 1 cut(s) 137
BisI GCNGC 6 cut(s) 180, 246, 351, 531, 534, 543
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 6 cut(s) 181, 247, 352, 532, 535, 544
Bme1390I CCNGG 2 cut(s) 645, 646
Bme18I GGWCC 3 cut(s) 345, 512, 584
BmeT110I CYCGRG 1 cut(s) 644
BmgT120I GGNCC 3 cut(s) 345, 512, 584
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 645, 646
BmsI GCATC 2 cut(s) 502, 670
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 548
Bpu1102I GCTNAGC 1 cut(s) 489
BpuMI CCSGG 2 cut(s) 645, 646
BsaJI CCNNGG 3 cut(s) 348, 644, 645
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 5 cut(s) 287, 503, 521, 545, 593
Bse1I ACTGG 5 cut(s) 526, 565, 598, 677, 698
BseAI TCCGGA 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 348, 644, 645
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 5 cut(s) 287, 503, 521, 545, 593
BseMII CTCAG 3 cut(s) 82, 197, 503
BseNI ACTGG 5 cut(s) 526, 565, 598, 677, 698
BseXI GCAGC 5 cut(s) 191, 232, 542, 545, 554
Bsh1236I CGCG 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 2 cut(s) 173, 645
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 5 cut(s) 287, 503, 521, 545, 593
BsmAI GTCTC 2 cut(s) 67, 687
BsmFI GGGAC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 644
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 4 cut(s) 137, 169, 199, 263
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 4 cut(s) 348, 350, 510, 659
BspCNI CTCAG 3 cut(s) 81, 196, 502
BspEI TCCGGA 1 cut(s) 172
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 3 cut(s) 164, 194, 258
BspQI GCTCTTC 1 cut(s) 220
BsrI ACTGG 5 cut(s) 526, 565, 598, 677, 698
BssECI CCNNGG 3 cut(s) 348, 644, 645
BssMI GATC 4 cut(s) 137, 169, 199, 263
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 3 cut(s) 220, 298, 427
BstDEI CTNAG 3 cut(s) 68, 183, 489
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 1 cut(s) 350
BstKTI GATC 4 cut(s) 140, 172, 202, 266
BstMAI GTCTC 2 cut(s) 67, 687
BstMBI GATC 4 cut(s) 137, 169, 199, 263
BstMWI GCNNNNNNNGC 4 cut(s) 188, 356, 539, 542
BstNSI RCATGY 2 cut(s) 296, 628
BstSCI CCNGG 2 cut(s) 643, 644
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 5 cut(s) 191, 232, 542, 545, 554
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 137, 199, 263
BstYI RGATCY 3 cut(s) 137, 199, 263
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 3 cut(s) 117, 591, 684
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 345, 512, 584
Cfr42I CCGCGG 1 cut(s) 351
Cfr9I CCCGGG 1 cut(s) 644
CviAII CATG 4 cut(s) 287, 293, 310, 625
DdeI CTNAG 3 cut(s) 68, 183, 489
DpnI GATC 4 cut(s) 139, 171, 201, 265
DpnII GATC 4 cut(s) 137, 169, 199, 263
Eam1104I CTCTTC 3 cut(s) 220, 298, 427
EarI CTCTTC 3 cut(s) 220, 298, 427
Eco47I GGWCC 3 cut(s) 345, 512, 584
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 644
FaeI CATG 4 cut(s) 290, 296, 313, 628
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 358
FatI CATG 4 cut(s) 286, 292, 309, 624
FauI CCCGC 1 cut(s) 666
Fnu4HI GCNGC 6 cut(s) 180, 246, 351, 531, 534, 543
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 6 cut(s) 180, 246, 351, 531, 534, 543
FspBI CTAG 2 cut(s) 129, 321
GluI GCNGC 6 cut(s) 180, 246, 351, 531, 534, 543
GsuI CTGGAG 1 cut(s) 548
HapII CCGG 2 cut(s) 173, 645
Hin1II CATG 4 cut(s) 290, 296, 313, 628
HindIII AAGCTT 1 cut(s) 189
HpaII CCGG 2 cut(s) 173, 645
HphI GGTGA 4 cut(s) 104, 328, 666, 687
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 2 cut(s) 186, 261
Hpy188III TCNNGA 3 cut(s) 70, 173, 331
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 5 cut(s) 282, 307, 375, 569, 702
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 689, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 356, 539, 542
HpyF3I CTNAG 3 cut(s) 68, 183, 489
Hsp92II CATG 4 cut(s) 290, 296, 313, 628
Kpn2I TCCGGA 1 cut(s) 172
KspI CCGCGG 1 cut(s) 351
Kzo9I GATC 4 cut(s) 137, 169, 199, 263
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 3 cut(s) 211, 607, 646
Lsp1109I GCAGC 5 cut(s) 191, 232, 542, 545, 554
LweI GCATC 2 cut(s) 502, 670
MaeI CTAG 2 cut(s) 129, 321
MaeIII GTNAC 4 cut(s) 92, 157, 316, 589
MalI GATC 4 cut(s) 139, 171, 201, 265
MboI GATC 4 cut(s) 137, 169, 199, 263
MboII GAAGA 6 cut(s) 17, 234, 237, 267, 315, 414
MflI RGATCY 3 cut(s) 137, 199, 263
MluCI AATT 3 cut(s) 73, 232, 442
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 5 cut(s) 29, 293, 299, 470, 617
MroI TCCGGA 1 cut(s) 172
MslI CAYNNNNRTG 3 cut(s) 291, 314, 666
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 2 cut(s) 173, 645
MspR9I CCNGG 2 cut(s) 645, 646
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 188, 356, 539, 542
NciI CCSGG 2 cut(s) 645, 646
NdeII GATC 4 cut(s) 137, 169, 199, 263
NlaIII CATG 4 cut(s) 290, 296, 313, 628
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 3 cut(s) 92, 316, 589
NspI RCATGY 2 cut(s) 296, 628
PciI ACATGT 2 cut(s) 292, 624
PciSI GCTCTTC 1 cut(s) 220
PflMI CCANNNNNTGG 2 cut(s) 503, 521
PkrI GCNGC 6 cut(s) 181, 247, 352, 532, 535, 544
PscI ACATGT 2 cut(s) 292, 624
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 3 cut(s) 345, 512, 584
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 3 cut(s) 137, 199, 263
RseI CAYNNNNRTG 3 cut(s) 291, 314, 666
SacII CCGCGG 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 220
SatI GCNGC 6 cut(s) 180, 246, 351, 531, 534, 543
Sau3AI GATC 4 cut(s) 137, 169, 199, 263
Sau96I GGNCC 3 cut(s) 345, 512, 584
ScrFI CCNGG 2 cut(s) 645, 646
SfaNI GCATC 2 cut(s) 502, 670
Sfr303I CCGCGG 1 cut(s) 351
SgrBI CCGCGG 1 cut(s) 351
SinI GGWCC 3 cut(s) 345, 512, 584
SmaI CCCGGG 1 cut(s) 646
SmiMI CAYNNNNRTG 3 cut(s) 291, 314, 666
Sse9I AATT 3 cut(s) 73, 232, 442
SsiI CCGC 4 cut(s) 348, 350, 510, 659
SspMI CTAG 2 cut(s) 129, 321
StyD4I CCNGG 2 cut(s) 643, 644
TaaI ACNGT 1 cut(s) 87
TasI AATT 3 cut(s) 73, 232, 442
TauI GCSGC 1 cut(s) 353
TscAI CASTG 3 cut(s) 124, 598, 684
TseFI GTSAC 3 cut(s) 92, 316, 589
TseI GCWGC 5 cut(s) 179, 245, 530, 533, 542
Tsp45I GTSAC 3 cut(s) 92, 316, 589
TspDTI ATGAA 3 cut(s) 275, 326, 414
TspMI CCCGGG 1 cut(s) 644
TspRI CASTG 3 cut(s) 124, 598, 684
Van91I CCANNNNNTGG 2 cut(s) 503, 521
VpaK11BI GGWCC 3 cut(s) 345, 512, 584
XceI RCATGY 2 cut(s) 296, 628
XmaI CCCGGG 1 cut(s) 644
XspI CTAG 2 cut(s) 129, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.