Rorug05G0492400

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007154
Physical Location & Seq
Forward (+)
67492812 .. 67495349
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0492400.1

Sequence Viewer

Length: 804 bp
ATGGCTCAATATGGCGGAGGAAGAAGATGGTCTCTTGAAGGAATGACTGCTCTCGTCACTGGTGGAACCAAAGGGATTGGGTATGCAATTGTTGAGGAATTGGCCGGATTAGGTGCAAGCGTACATACTTGTTCTCGGAATGAAACCCAGCTCAATGAATGCTTGAGTCAATGGAAGAAGAAGGGTTTTCATCAAGTCACTGGTTCAGTATGTGATGTGGTCTCAAAAATCCAGAGAGAGGAACTAATACAGAAGGTCTCATCACTGTTTCATGGGAAACTTAATATCCTTATAAACAACGTGGGAACTACTAATGCAAAGCCAACAACTGAGTGCACAGCCGAAGACTACTCATTTATCATGAGTACCAATCTTGAATCTGCTTACACTATGTGCCAACTAGCACATCCTCTTCTCAAAACTTCAGGAGCTGGTAACATTATTTTTCTGTCTTCTGTTGCTGGTGTGGTATCAGTTGGGCAGGTTGCGAGTGTATATGGTGCAACTAAAGGAGCAATGAATCAATTGGCCAAAACTTTGGCTTGTGAGTGGGCAAAAGACAAGATTAGGATTAATAGTGTTGCACCTTGGGTCATCAGAACTCCTCTTGTTGAATATATTTTGAATGACGAAAAGTTAATGGAGGCTGTCATCTCTCGAACCCCATTAGGACGTATAGGAGAGCCTGAAGAAGTGTCTGCCTTGGTGGCATTTCTATGCCTTCCTGTAGCCTCATACATAACAGGGCAGACTATTTGCGTCGATGGAGGGATAACTATCAATGGCTTCCAGTTTCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

267

Amino Acids

28.63

Weight (kDa)

6.89

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 14 - 259 4e-07 SDR-like rossmann domain
adh_short PF00106 16 - 210 1.3e-47 short chain dehydrogenase
KR PF08659 16 - 179 1.5e-10 KR domain
adh_short_C2 PF13561 24 - 259 4.8e-60 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 472
AciI CCGC 1 cut(s) 15
AcoI YGGCCR 2 cut(s) 102, 528
AcuI CTGAAG 2 cut(s) 408, 708
AdeI CACNNNGTG 1 cut(s) 393
AfaI GTAC 2 cut(s) 123, 367
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 38, 377, 614, 625, 797
AluBI AGCT 2 cut(s) 151, 431
AluI AGCT 2 cut(s) 151, 431
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 36, 226, 262
Alw44I GTGCAC 1 cut(s) 334
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 102, 528
ApaLI GTGCAC 1 cut(s) 334
AseI ATTAAT 1 cut(s) 573
BaeGI GKGCMC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 351, 444
Bbv12I GWGCWC 1 cut(s) 338
BccI CCATC 2 cut(s) 21, 758
BcoDI GTCTC 3 cut(s) 36, 226, 262
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 472
BglI GCCNNNNNGGC 1 cut(s) 707
BmiI GGNNCC 1 cut(s) 67
BpiI GAAGAC 2 cut(s) 351, 444
BpuEI CTTGAG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 776
BsaI GGTCTC 3 cut(s) 36, 226, 262
BsaJI CCNNGG 2 cut(s) 587, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 64, 205, 790
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 776
BseDI CCNNGG 2 cut(s) 587, 702
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 776
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 3 cut(s) 64, 205, 790
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 338
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 2 cut(s) 104, 530
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 3 cut(s) 36, 226, 262
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 2 cut(s) 104, 530
Bso31I GGTCTC 3 cut(s) 36, 226, 262
Bsp1286I GDGCHC 1 cut(s) 338
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 104, 530
BspCNI CTCAG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 472
BspTNI GGTCTC 3 cut(s) 36, 226, 262
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 3 cut(s) 64, 205, 790
BssECI CCNNGG 2 cut(s) 587, 702
BssT1I CCWWGG 2 cut(s) 587, 702
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 406
BstMAI GTCTC 3 cut(s) 36, 226, 262
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 1 cut(s) 338
BstV2I GAAGAC 2 cut(s) 351, 444
BstXI CCANNNNNNTGG 1 cut(s) 538
BsuRI GGCC 2 cut(s) 104, 530
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 57, 198, 263
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 431
CciI TCATGA 1 cut(s) 360
CseI GACGC 1 cut(s) 748
Csp6I GTAC 2 cut(s) 122, 366
CviAII CATG 2 cut(s) 272, 361
CviQI GTAC 2 cut(s) 122, 366
DdeI CTNAG 1 cut(s) 330
DraIII CACNNNGTG 1 cut(s) 393
EaeI YGGCCR 2 cut(s) 102, 528
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 587, 702
Eco31I GGTCTC 3 cut(s) 36, 226, 262
Eco57I CTGAAG 2 cut(s) 408, 708
EcoT14I CCWWGG 2 cut(s) 587, 702
ErhI CCWWGG 2 cut(s) 587, 702
FaeI CATG 2 cut(s) 275, 364
FatI CATG 2 cut(s) 271, 360
FokI GGATG 1 cut(s) 393
FspBI CTAG 1 cut(s) 401
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 104, 530
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 748
Hin1II CATG 2 cut(s) 275, 364
HinfI GANTC 3 cut(s) 166, 377, 520
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 138, 599
Hpy188III TCNNGA 6 cut(s) 35, 232, 361, 374, 426, 657
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 4 cut(s) 32, 175, 247, 731
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 2 cut(s) 300, 673
HpyCH4V TGCA 6 cut(s) 86, 116, 317, 336, 503, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 300, 673
Hsp92II CATG 2 cut(s) 275, 364
LmnI GCTCC 2 cut(s) 428, 512
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 300, 673
MaeIII GTNAC 3 cut(s) 55, 196, 434
MboII GAAGA 8 cut(s) 33, 36, 187, 190, 356, 404, 444, 701
MfeI CAATTG 2 cut(s) 87, 524
MhlI GDGCHC 1 cut(s) 338
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 3 cut(s) 87, 98, 524
MluNI TGGCCA 1 cut(s) 530
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 8 cut(s) 11, 88, 232, 420, 615, 637, 742, 761
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MseI TTAA 3 cut(s) 282, 573, 638
MslI CAYNNNNRTG 1 cut(s) 715
Msp20I TGGCCA 1 cut(s) 530
MspI CCGG 1 cut(s) 105
MunI CAATTG 2 cut(s) 87, 524
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 707
NlaIII CATG 2 cut(s) 275, 364
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 55, 196
PagI TCATGA 1 cut(s) 360
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 377, 520
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 431
RsaI GTAC 2 cut(s) 123, 367
RsaNI GTAC 2 cut(s) 122, 366
RseI CAYNNNNRTG 1 cut(s) 715
SaqAI TTAA 3 cut(s) 282, 573, 638
SchI GAGTC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 338
SetI ASST 8 cut(s) 115, 153, 258, 303, 433, 486, 589, 676
SfcI CTRYAG 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 715
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 3 cut(s) 87, 98, 524
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 401
StyI CCWWGG 2 cut(s) 587, 702
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 2 cut(s) 303, 676
TaqI TCGA 2 cut(s) 658, 762
TasI AATT 3 cut(s) 87, 98, 524
TfiI GAWTC 2 cut(s) 377, 520
Tru1I TTAA 3 cut(s) 282, 573, 638
Tru9I TTAA 3 cut(s) 282, 573, 638
TscAI CASTG 3 cut(s) 64, 205, 270
TseFI GTSAC 2 cut(s) 55, 196
Tsp45I GTSAC 2 cut(s) 55, 196
TspDTI ATGAA 5 cut(s) 156, 171, 179, 260, 533
TspRI CASTG 3 cut(s) 64, 205, 270
VneI GTGCAC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 573
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.