AT1G23110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005818
Physical Location & Seq
Reverse (-)
8196447 .. 8198331
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23110.4

Sequence Viewer

Length: 747 bp
ATGAGTCTGCAAAATGTATCAAAGTCGAGCAATGCCCTTGAGGGTATCCACGGGGTTCATGTCACGTCTCATTCTCCTTTCTCATTTGAGAAGACAACTCAAGTTAGTGACTTTCAGACCAACACCAAATCCTCTGTCATGGAATCAAATCAAAGACTTTCCATCGAACGTTTTTGGCAGCAAAGACCTCCATGCTTAAGGCCAATCTGTTGCAGCATTCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCTAATGTGGCTACTTCACTTCCTTTCATCTTCCTCGGAATGCAGGCACCAAGGAAGAATCTGAACACAAAGGTGTACGCAAACTCCCTAATTGGAGTTGGAATTGCGTCGAGTCTGTATCATGCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACAACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAATTTCTGATGGCTGCATCAGCTTTAGTTCTACCTTTTCAACCTCTCATGGTCTCTGCCGTTCACACTGGAATGATGGAGGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACAGCTCATAACGTACACAAGATGTCTTCCTTGCTAGGAGGTGCTCTGTTCATAGCTGATGATTTCTTCCCCGAGACACCTTTCCTTCACGCAGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAATAAACTTCTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.33

Weight (kDa)

9.51

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB1I GGYRCC 2 cut(s) 295, 696
AccII CGCG 1 cut(s) 222
AciI CCGC 1 cut(s) 222
AclI AACGTT 1 cut(s) 169
AclWI GGATC 2 cut(s) 578, 591
AcsI RAATTY 1 cut(s) 476
AfaI GTAC 3 cut(s) 326, 398, 612
AfiI CCNNNNNNNGG 1 cut(s) 406
AflII CTTAAG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 515
AjiI CACGTC 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 5 cut(s) 248, 497, 576, 602, 653
AluI AGCT 5 cut(s) 248, 497, 576, 602, 653
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 4 cut(s) 72, 449, 532, 665
AlwI GGATC 2 cut(s) 578, 591
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 6 cut(s) 178, 213, 248, 488, 704, 707
ApoI RAATTY 1 cut(s) 476
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 668
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 2 cut(s) 295, 696
BanII GRGCYC 1 cut(s) 457
BbsI GAAGAC 2 cut(s) 98, 615
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 6 cut(s) 190, 225, 235, 475, 691, 719
BccI CCATC 4 cut(s) 170, 399, 478, 544
BceAI ACGGC 1 cut(s) 518
BciVI GTATCC 1 cut(s) 56
BcoDI GTCTC 4 cut(s) 72, 449, 532, 665
BfaI CTAG 2 cut(s) 378, 632
BfmI CTRYAG 1 cut(s) 705
BfrI CTTAAG 1 cut(s) 196
BfuI GTATCC 1 cut(s) 56
BglII AGATCT 1 cut(s) 589
BisI GCNGC 6 cut(s) 179, 214, 249, 489, 705, 708
BlsI GCNGC 6 cut(s) 180, 215, 250, 490, 706, 709
BmeT110I CYCGRG 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 66
BmiI GGNNCC 3 cut(s) 297, 585, 698
BmsI GCATC 1 cut(s) 500
BpiI GAAGAC 2 cut(s) 98, 615
BpuEI CTTGAG 3 cut(s) 59, 84, 433
BsaBI GATNNNNATC 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 49, 283, 299
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 588
BseDI CCNNGG 3 cut(s) 49, 283, 299
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 547
BseXI GCAGC 6 cut(s) 190, 225, 235, 475, 691, 719
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 2 cut(s) 295, 696
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 668
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 4 cut(s) 72, 449, 532, 665
BsmBI CGTCTC 1 cut(s) 72
BsmI GAATGC 2 cut(s) 216, 294
BsnI GGCC 1 cut(s) 202
Bso31I GGTCTC 1 cut(s) 532
BsoBI CYCGRG 1 cut(s) 668
Bsp1286I GDGCHC 2 cut(s) 457, 643
Bsp143I GATC 2 cut(s) 583, 589
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 393
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 297, 585, 698
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 2 cut(s) 578, 591
BspT107I GGYRCC 2 cut(s) 295, 696
BspTI CTTAAG 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 547
BssECI CCNNGG 3 cut(s) 49, 283, 299
BssMI GATC 2 cut(s) 583, 589
BssT1I CCWWGG 1 cut(s) 299
BstAFI CTTAAG 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 294, 691, 695
BstDEI CTNAG 3 cut(s) 238, 401, 458
BstDSI CCRYGG 1 cut(s) 49
BstEII GGTNACC 1 cut(s) 224
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 2 cut(s) 586, 592
BstMAI GTCTC 4 cut(s) 72, 449, 532, 665
BstMBI GATC 2 cut(s) 583, 589
BstMWI GCNNNNNNNGC 3 cut(s) 219, 257, 494
BstNSI RCATGY 1 cut(s) 729
BstPI GGTNACC 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 705
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 6 cut(s) 190, 225, 235, 475, 691, 719
BstV2I GAAGAC 2 cut(s) 98, 615
BstX2I RGATCY 2 cut(s) 583, 589
BstYI RGATCY 2 cut(s) 583, 589
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 540
Cac8I GCNNGC 3 cut(s) 294, 691, 695
CseI GACGC 1 cut(s) 345
Csp6I GTAC 3 cut(s) 325, 397, 611
CviAII CATG 6 cut(s) 59, 139, 192, 371, 523, 726
CviQI GTAC 3 cut(s) 325, 397, 611
DdeI CTNAG 3 cut(s) 238, 401, 458
DpnI GATC 2 cut(s) 585, 591
DpnII GATC 2 cut(s) 583, 589
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 532
Eco88I CYCGRG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 6 cut(s) 62, 142, 195, 374, 526, 729
FaiI YATR 9 cut(s) 60, 140, 193, 372, 442, 524, 606, 650, 727
FatI CATG 6 cut(s) 58, 138, 191, 370, 522, 725
Fnu4HI GCNGC 6 cut(s) 179, 214, 249, 489, 705, 708
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 6 cut(s) 179, 214, 249, 489, 705, 708
FspBI CTAG 2 cut(s) 378, 632
GluI GCNGC 6 cut(s) 179, 214, 249, 489, 705, 708
HaeIII GGCC 1 cut(s) 202
HgaI GACGC 1 cut(s) 345
Hin1II CATG 6 cut(s) 62, 142, 195, 374, 526, 729
HindIII AAGCTT 1 cut(s) 574
HinfI GANTC 4 cut(s) 4, 143, 307, 361
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 325, 538, 613
Hpy188I TCNGA 4 cut(s) 117, 287, 312, 483
Hpy188III TCNNGA 2 cut(s) 587, 740
Hpy8I GTNNAC 3 cut(s) 325, 538, 613
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 1 cut(s) 692
HpyCH4IV ACGT 3 cut(s) 65, 169, 609
HpyCH4V TGCA 6 cut(s) 10, 213, 292, 491, 707, 729
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 257, 494
HpyF3I CTNAG 3 cut(s) 238, 401, 458
HpySE526I ACGT 3 cut(s) 65, 169, 609
Hsp92II CATG 6 cut(s) 62, 142, 195, 374, 526, 729
Kzo9I GATC 2 cut(s) 583, 589
LpnPI CCDG 7 cut(s) 242, 278, 413, 528, 600, 675, 679
Lsp1109I GCAGC 6 cut(s) 190, 225, 235, 475, 691, 719
LweI GCATC 1 cut(s) 500
MaeI CTAG 2 cut(s) 378, 632
MaeII ACGT 3 cut(s) 65, 169, 609
MaeIII GTNAC 3 cut(s) 61, 107, 224
MalI GATC 2 cut(s) 585, 591
MboI GATC 2 cut(s) 583, 589
MboII GAAGA 5 cut(s) 103, 271, 316, 615, 655
MflI RGATCY 2 cut(s) 583, 589
MhlI GDGCHC 2 cut(s) 457, 643
MluCI AATT 3 cut(s) 339, 351, 476
MlyI GAGTC 2 cut(s) 13, 370
MmeI TCCRAC 2 cut(s) 328, 700
MseI TTAA 2 cut(s) 197, 578
MslI CAYNNNNRTG 2 cut(s) 320, 545
MspA1I CMGCKG 1 cut(s) 248
MspCI CTTAAG 1 cut(s) 196
Mva1269I GAATGC 2 cut(s) 216, 294
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 219, 257, 494
NdeII GATC 2 cut(s) 583, 589
NlaIII CATG 6 cut(s) 62, 142, 195, 374, 526, 729
NlaIV GGNNCC 3 cut(s) 297, 585, 698
NmuCI GTSAC 3 cut(s) 61, 107, 224
NspI RCATGY 1 cut(s) 729
OliI CACNNNNGTG 1 cut(s) 320
PctI GAATGC 2 cut(s) 216, 294
PfeI GAWTC 2 cut(s) 143, 307
PkrI GCNGC 6 cut(s) 180, 215, 250, 490, 706, 709
PleI GAGTC 2 cut(s) 12, 369
PpsI GAGTC 2 cut(s) 12, 369
Psp1406I AACGTT 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 297, 585, 698
PstI CTGCAG 1 cut(s) 709
PsuI RGATCY 2 cut(s) 583, 589
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 3 cut(s) 326, 398, 612
RsaNI GTAC 3 cut(s) 325, 397, 611
RseI CAYNNNNRTG 2 cut(s) 320, 545
SaqAI TTAA 2 cut(s) 197, 578
SatI GCNGC 6 cut(s) 179, 214, 249, 489, 705, 708
Sau3AI GATC 2 cut(s) 583, 589
SchI GAGTC 2 cut(s) 13, 370
SduI GDGCHC 2 cut(s) 457, 643
SfaNI GCATC 1 cut(s) 500
SfcI CTRYAG 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 320, 545
SmlI CTYRAG 5 cut(s) 38, 99, 196, 448, 740
SmoI CTYRAG 5 cut(s) 38, 99, 196, 448, 740
Sse9I AATT 3 cut(s) 339, 351, 476
SsiI CCGC 1 cut(s) 222
SspMI CTAG 2 cut(s) 378, 632
StyI CCWWGG 1 cut(s) 299
TaiI ACGT 3 cut(s) 68, 172, 612
TaqI TCGA 3 cut(s) 26, 165, 359
TasI AATT 3 cut(s) 339, 351, 476
TfiI GAWTC 2 cut(s) 143, 307
Tru1I TTAA 2 cut(s) 197, 578
Tru9I TTAA 2 cut(s) 197, 578
TscAI CASTG 1 cut(s) 547
TseFI GTSAC 3 cut(s) 61, 107, 224
TseI GCWGC 6 cut(s) 178, 213, 248, 488, 704, 707
Tsp45I GTSAC 3 cut(s) 61, 107, 224
TspDTI ATGAA 3 cut(s) 47, 265, 637
TspRI CASTG 1 cut(s) 547
Vha464I CTTAAG 1 cut(s) 196
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 729
XspI CTAG 2 cut(s) 378, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.