Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005818

Physical Location & Seq

Genomic Coordinates Forward (+)

4187730 .. 4191102

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAATGCATATTGGATGTTGAAGAAAAATCAAACGTGGGTTGTGATGTTCTGGATCTTCCAGTTAGGTTGGGTTCTGAGCTTTTGCTCAATACATCTGCATTCCTTGAATTTGAGATTTTGGGAGAGGATGGCTTGAAGTCCGAACTGTTTGTTGATTGTAGGCCGGGAGAGTTGCCTTGTTCAAGCCAAATAGGGTTCCTTGTAGTGACTGCGTGGTACATTACATCAATACATTGGCTCACACTCGGTACACCTCTTCCAGCAGTTGCCAGCAAGTTTTTGCTGGCATTAAAGTTGCTTTGGCTTACTACTGAAAAATTTATGAGTCCCCAGAGTACATTGAATCCTTGTAGAGCCCTAGAGGGCATGCATGGGGTACATGTGGTGCCTAGTTCACGGTTTGAATCAGAAGAGACTACTCAAGATGGGGACTTTGCTCACTCAACTTGTACAAGTTCGGTTATTGGAACAAATTTGTCTATGCAGCGAGTATGGCAGCACACACCACCATGTTTGAAGCCTATTCAGGGTTGCATTCATGGTGATCGTAACCTCGCAGAAACAGCTGTTAATGTGCTCACTTCACTTCCTTTCATAGTTCTTGGGATCCATGCCCCAAGGAAGAATCTAAACACCAAGCTATATGCTAATTCATTAATTGGAGTTGGAGTTGCCTCGAGTTTATATCATTGTTCAAGAGGAAAACTAAGGAAATATATGAGATGGGCTGACTATACAATGATAGCTACAGCAACAGTATGTCTCTCAAGAGCACTCAGAAATGAAAACCCAAAATTGCTCATGGCAGCTTCTGCAGTATTTCTACCTATCCAGCCTCTGATGGTTTCAGCTGTTCATACTGGAATGATGGAGGTAGCGTTTGCGAAAAGAGCTTTAAAAGATCCAGAGCTAAGGATGGCACACAATGTGCATAAGATGTCGTCATTATTGGGTGGTGTACTTTTTATTGCAGATGATGTGTTTCCCAGAACTCCATACCTTCATGCTGCATGGCATCTTGCTGCAGCTGTAGGTGTTAGCACCTGCAATAAGCTTCTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

38.96

Weight (kDa)

7.61

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G70900
fragaria_vesca	FvH4_4g32670
malus_domestica	MD13G1023800.v1.1 MD16G1026500.v1.1
prunus_persica	Prupe.1G326900_v2.0.a1
pyrus_communis	pycom13g02220 pycom16g02230
rosa_chinensis	RchiOBHm_Chr4g0441581
rosa_laevigata	RLG00000006083
rosa_multiflora	Rmu_sc0000353.1_g000027
rosa_roxburghii	Rroxscaffold_5G00382420
rosa_rugosa	Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334800
rosa_samantha	Rh4AG386100 Rh4BG400300 Rh4CG415200 Rh4DG393000
rosa_wichuraiana	Rw4G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1055
Acc36I	ACCTGC	1 cut(s)	1055
AccB1I	GGYRCC	1 cut(s)	388
AclWI	GGATC	4 cut(s)	63, 604, 617, 899
AcsI	RAATTY	3 cut(s)	110, 320, 475
AdeI	CACNNNGTG	1 cut(s)	931
AfaI	GTAC	6 cut(s)	221, 253, 340, 381, 454, 963
AfiI	CCNNNNNNNGG	1 cut(s)	530
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	8 cut(s)	23, 110, 139, 186, 346, 407, 520, 699
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
Alw21I	GWGCWC	2 cut(s)	582, 778
Alw26I	GTCTC	2 cut(s)	410, 770
AlwI	GGATC	4 cut(s)	63, 604, 617, 899
AlwNI	CAGNNNCTG	2 cut(s)	815, 841
Ama87I	CYCGRG	2 cut(s)	679, 1061
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	6 cut(s)	487, 499, 809, 1010, 1025, 1028
ApoI	RAATTY	3 cut(s)	110, 320, 475
AseI	ATTAAT	1 cut(s)	659
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	557
AvaI	CYCGRG	2 cut(s)	679, 1061
BamHI	GGATCC	1 cut(s)	609
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	2 cut(s)	582, 778
BbvI	GCAGC	6 cut(s)	499, 511, 821, 997, 1012, 1040
BccI	CCATC	6 cut(s)	125, 422, 720, 838, 865, 913
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	410, 770
BfaI	CTAG	2 cut(s)	362, 393
BfmI	CTRYAG	4 cut(s)	750, 816, 1026, 1032
BfuAI	ACCTGC	1 cut(s)	1055
BisI	GCNGC	6 cut(s)	488, 500, 810, 1011, 1026, 1029
BlsI	GCNGC	6 cut(s)	489, 501, 811, 1012, 1027, 1030
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	2 cut(s)	679, 1061
BmiI	GGNNCC	3 cut(s)	200, 390, 611
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	1027
Bpu10I	CCTNAGC	1 cut(s)	914
BpuEI	CTTGAG	2 cut(s)	408, 754
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	620
BsaXI	ACNNNNNCTCC	4 cut(s)	657, 687, 866, 896
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	2 cut(s)	62, 868
BseDI	CCNNGG	1 cut(s)	620
BseGI	GGATG	3 cut(s)	22, 136, 924
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	69, 793
BseNI	ACTGG	2 cut(s)	62, 868
BseXI	GCAGC	6 cut(s)	499, 511, 821, 997, 1012, 1040
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	388
BsiHKAI	GWGCWC	2 cut(s)	582, 778
BsiHKCI	CYCGRG	2 cut(s)	679, 1061
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	315, 446
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	2 cut(s)	410, 770
BsmFI	GGGAC	2 cut(s)	315, 446
BsmI	GAATGC	2 cut(s)	101, 537
BsnI	GGCC	1 cut(s)	166
BsoBI	CYCGRG	2 cut(s)	679, 1061
Bsp1286I	GDGCHC	3 cut(s)	361, 582, 778
Bsp1407I	TGTACA	1 cut(s)	452
Bsp143I	GATC	4 cut(s)	55, 547, 609, 904
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	70, 792
BspLI	GGNNCC	3 cut(s)	200, 390, 611
BspMAI	CTGCAG	2 cut(s)	820, 1030
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	4 cut(s)	63, 604, 617, 899
BspT107I	GGYRCC	1 cut(s)	388
BsrGI	TGTACA	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	62, 868
BssECI	CCNNGG	1 cut(s)	620
BssMI	GATC	4 cut(s)	55, 547, 609, 904
BssT1I	CCWWGG	1 cut(s)	620
Bst4CI	ACNGT	3 cut(s)	150, 402, 760
Bst6I	CTCTTC	2 cut(s)	264, 408
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstAUI	TGTACA	1 cut(s)	452
BstC8I	GCNNGC	3 cut(s)	274, 288, 371
BstDEI	CTNAG	4 cut(s)	78, 710, 779, 914
BstF5I	GGATG	3 cut(s)	22, 136, 924
BstKTI	GATC	4 cut(s)	58, 550, 612, 907
BstMAI	GTCTC	2 cut(s)	410, 770
BstMBI	GATC	4 cut(s)	55, 547, 609, 904
BstMWI	GCNNNNNNNGC	4 cut(s)	496, 566, 815, 893
BstNSI	RCATGY	2 cut(s)	373, 386
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	4 cut(s)	750, 816, 1026, 1032
BstV1I	GCAGC	6 cut(s)	499, 511, 821, 997, 1012, 1040
BstX2I	RGATCY	3 cut(s)	55, 609, 904
BstYI	RGATCY	3 cut(s)	55, 609, 904
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	22, 136, 924
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	3 cut(s)	274, 288, 371
CaiI	CAGNNNCTG	2 cut(s)	815, 841
Csp6I	GTAC	6 cut(s)	220, 252, 339, 380, 453, 962
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	9 cut(s)	370, 374, 383, 513, 542, 614, 805, 1007, 1014
CviQI	GTAC	6 cut(s)	220, 252, 339, 380, 453, 962
DdeI	CTNAG	4 cut(s)	78, 710, 779, 914
DpnI	GATC	4 cut(s)	57, 549, 611, 906
DpnII	GATC	4 cut(s)	55, 547, 609, 904
DraI	TTTAAA	1 cut(s)	900
DraIII	CACNNNGTG	1 cut(s)	931
Eam1104I	CTCTTC	2 cut(s)	264, 408
EarI	CTCTTC	2 cut(s)	264, 408
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	361
Eco88I	CYCGRG	2 cut(s)	679, 1061
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	2 cut(s)	11, 375
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	9 cut(s)	373, 377, 386, 516, 545, 617, 808, 1010, 1017
FaqI	GGGAC	2 cut(s)	315, 446
FatI	CATG	9 cut(s)	369, 373, 382, 512, 541, 613, 804, 1006, 1013
Fnu4HI	GCNGC	6 cut(s)	488, 500, 810, 1011, 1026, 1029
FokI	GGATG	3 cut(s)	29, 143, 931
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	6 cut(s)	488, 500, 810, 1011, 1026, 1029
FspBI	CTAG	2 cut(s)	362, 393
GluI	GCNGC	6 cut(s)	488, 500, 810, 1011, 1026, 1029
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	9 cut(s)	373, 377, 386, 516, 545, 617, 808, 1010, 1017
HindIII	AAGCTT	1 cut(s)	1055
HinfI	GANTC	4 cut(s)	328, 346, 407, 628
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	254, 398, 962
Hpy188I	TCNGA	5 cut(s)	79, 145, 412, 782, 843
Hpy188III	TCNNGA	6 cut(s)	53, 425, 699, 771, 908, 1061
Hpy8I	GTNNAC	3 cut(s)	254, 398, 962
HpyAV	CCTTC	1 cut(s)	1013
HpyCH4III	ACNGT	3 cut(s)	150, 402, 760
HpyCH4IV	ACGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	4 cut(s)	496, 566, 815, 893
HpyF3I	CTNAG	4 cut(s)	78, 710, 779, 914
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	9 cut(s)	373, 377, 386, 516, 545, 617, 808, 1010, 1017
Kzo9I	GATC	4 cut(s)	55, 547, 609, 904
Lsp1109I	GCAGC	6 cut(s)	499, 511, 821, 997, 1012, 1040
LweI	GCATC	1 cut(s)	1027
MaeI	CTAG	2 cut(s)	362, 393
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	208, 551
MalI	GATC	4 cut(s)	57, 549, 611, 906
MboI	GATC	4 cut(s)	55, 547, 609, 904
MboII	GAAGA	5 cut(s)	35, 50, 251, 425, 637
MflI	RGATCY	3 cut(s)	55, 609, 904
MhlI	GDGCHC	3 cut(s)	361, 582, 778
MluCI	AATT	6 cut(s)	110, 320, 475, 652, 660, 797
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	8 cut(s)	121, 267, 358, 566, 688, 695, 849, 868
Mph1103I	ATGCAT	2 cut(s)	11, 375
MseI	TTAA	4 cut(s)	293, 573, 659, 899
MslI	CAYNNNNRTG	1 cut(s)	511
MspA1I	CMGCKG	3 cut(s)	569, 854, 1031
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	2 cut(s)	101, 537
MwoI	GCNNNNNNNGC	4 cut(s)	496, 566, 815, 893
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	4 cut(s)	55, 547, 609, 904
NlaIII	CATG	9 cut(s)	373, 377, 386, 516, 545, 617, 808, 1010, 1017
NlaIV	GGNNCC	3 cut(s)	200, 390, 611
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	2 cut(s)	11, 375
NspI	RCATGY	2 cut(s)	373, 386
PaeI	GCATGC	1 cut(s)	373
PaeR7I	CTCGAG	2 cut(s)	679, 1061
PaqCI	CACCTGC	1 cut(s)	1055
PciI	ACATGT	1 cut(s)	382
PctI	GAATGC	2 cut(s)	101, 537
PfeI	GAWTC	3 cut(s)	346, 407, 628
PkrI	GCNGC	6 cut(s)	489, 501, 811, 1012, 1027, 1030
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PscI	ACATGT	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	659
PspN4I	GGNNCC	3 cut(s)	200, 390, 611
PspXI	VCTCGAGB	1 cut(s)	679
PstI	CTGCAG	2 cut(s)	820, 1030
PstNI	CAGNNNCTG	2 cut(s)	815, 841
PsuI	RGATCY	3 cut(s)	55, 609, 904
PvuII	CAGCTG	3 cut(s)	569, 854, 1031
RsaI	GTAC	6 cut(s)	221, 253, 340, 381, 454, 963
RsaNI	GTAC	6 cut(s)	220, 252, 339, 380, 453, 962
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	4 cut(s)	293, 573, 659, 899
SatI	GCNGC	6 cut(s)	488, 500, 810, 1011, 1026, 1029
Sau3AI	GATC	4 cut(s)	55, 547, 609, 904
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	3 cut(s)	361, 582, 778
SfaNI	GCATC	1 cut(s)	1027
SfcI	CTRYAG	4 cut(s)	750, 816, 1026, 1032
Sfr274I	CTCGAG	2 cut(s)	679, 1061
SlaI	CTCGAG	2 cut(s)	679, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	4 cut(s)	423, 679, 769, 1061
SmoI	CTYRAG	4 cut(s)	423, 679, 769, 1061
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	6 cut(s)	110, 320, 475, 652, 660, 797
SspMI	CTAG	2 cut(s)	362, 393
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	150, 402, 760
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	680, 1062
TasI	AATT	6 cut(s)	110, 320, 475, 652, 660, 797
TatI	WGTACW	3 cut(s)	338, 452, 961
TfiI	GAWTC	3 cut(s)	346, 407, 628
Tru1I	TTAA	4 cut(s)	293, 573, 659, 899
Tru9I	TTAA	4 cut(s)	293, 573, 659, 899
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	6 cut(s)	487, 499, 809, 1010, 1025, 1028
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	7 cut(s)	17, 530, 586, 645, 801, 848, 995
VspI	ATTAAT	1 cut(s)	659
XapI	RAATTY	3 cut(s)	110, 320, 475
XceI	RCATGY	2 cut(s)	373, 386
XhoI	CTCGAG	2 cut(s)	679, 1061
XspI	CTAG	2 cut(s)	362, 393
Zsp2I	ATGCAT	2 cut(s)	11, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.