Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005818

Physical Location & Seq

Genomic Coordinates Forward (+)

1700194 .. 1703572

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1023800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTCCCAAAAGTACATTGAACCCGAGCAGAGCCCTACAGGGCATGCATGGGGTGCATGTGGTGTCCAGTTCTCGGTTTGAGTCAGAAGAGACTACTCAAAATGACCTTTCTCACTCAACTTATGGAACCTCACCTATTGGAGCAAATCAGCAGCTTTTTATGCAGCGAGTGTGGCAGCAAAGACCGCCATGCTTGAAACTCATCCAGGGCTGCTGCATTCAAGGTGATCAGAGTGTTGCAGAAACAGTCGTGAATGTGCTCACTTCACTTCCTTTTATAGTTCTTGGAATCCATGCCCCGAGGAAGAATCTAAATACCAAGCTATATGCTAATTCATTAATCGGAGTTGGAGTCGCCTCAAGTTTATATCATTCTTCAAGAGGAAAACTAAGGAAATATTTAAGATGGGCCGACTATACGATGATAGCCACAACAACAGTATGTCTATCAAGAGCCCTCAGAAATGAAAACCCAAAACTGCTGACAGCAGCTTCTGCATTATTTTTACCTTTCCAGCCTCTGATGGTTTCTGCCGTTCACACGGGATTAATGGAGGTAGCATTCGCCAAGAGAGCATTGAAGGATCCAGAGCTAAGAATGGCCCACAATGTACATAAGATGTCATCACTATTGGGAGGTGTTCTGTTCATTGCCGATGACATGTTTCCTCAGACTCCGTTCCTTCATGCTGCGTGGCACCTTGCTGCAGCCGTCGGTGTTGGCACCTGCAATAAGCTTCTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.28

Weight (kDa)

9.54

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G70900
fragaria_vesca	FvH4_4g32670
malus_domestica	MD13G1023800.v1.1 MD16G1026500.v1.1
prunus_persica	Prupe.1G326900_v2.0.a1
pyrus_communis	pycom13g02220 pycom16g02230
rosa_chinensis	RchiOBHm_Chr4g0441581
rosa_laevigata	RLG00000006083
rosa_multiflora	Rmu_sc0000353.1_g000027
rosa_roxburghii	Rroxscaffold_5G00382420
rosa_rugosa	Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334800
rosa_samantha	Rh4AG386100 Rh4BG400300 Rh4CG415200 Rh4DG393000
rosa_wichuraiana	Rw4G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	737
AccB1I	GGYRCC	2 cut(s)	699, 725
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	581, 594
AfaI	GTAC	2 cut(s)	16, 615
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	5 cut(s)	22, 199, 224, 381, 583
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	5 cut(s)	157, 325, 494, 595, 739
AluI	AGCT	5 cut(s)	157, 325, 494, 595, 739
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	581, 594
AlwNI	CAGNNNCTG	2 cut(s)	497, 523
Ama87I	CYCGRG	2 cut(s)	25, 301
AoxI	GGCC	2 cut(s)	411, 603
ApeKI	GCWGC	9 cut(s)	154, 166, 178, 213, 216, 491, 692, 707, 710
AseI	ATTAAT	2 cut(s)	341, 551
AspS9I	GGNCC	2 cut(s)	411, 604
AsuHPI	GGTGA	2 cut(s)	126, 239
AvaI	CYCGRG	2 cut(s)	25, 301
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	2 cut(s)	699, 725
BanII	GRGCYC	2 cut(s)	37, 460
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	9 cut(s)	166, 178, 190, 200, 203, 503, 679, 694, 722
BccI	CCATC	2 cut(s)	402, 520
BceAI	ACGGC	2 cut(s)	521, 698
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	38, 708
BfuAI	ACCTGC	1 cut(s)	737
BisI	GCNGC	9 cut(s)	155, 167, 179, 214, 217, 492, 693, 708, 711
BlsI	GCNGC	9 cut(s)	156, 168, 180, 215, 218, 493, 694, 709, 712
Bme1390I	CCNGG	1 cut(s)	209
BmeT110I	CYCGRG	2 cut(s)	25, 301
BmgT120I	GGNCC	2 cut(s)	411, 604
BmiI	GGNNCC	4 cut(s)	130, 588, 701, 727
BmrFI	CCNGG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	208, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	208, 302
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	2 cut(s)	475, 686
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	9 cut(s)	166, 178, 190, 200, 203, 503, 679, 694, 722
BshFI	GGCC	2 cut(s)	413, 605
BshNI	GGYRCC	2 cut(s)	699, 725
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	2 cut(s)	25, 301
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	86
BsmI	GAATGC	2 cut(s)	219, 563
BsnI	GGCC	2 cut(s)	413, 605
BsoBI	CYCGRG	2 cut(s)	25, 301
Bsp1286I	GDGCHC	3 cut(s)	37, 264, 460
Bsp1407I	TGTACA	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	229, 586
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	413, 605
BspCNI	CTCAG	2 cut(s)	474, 685
BspLI	GGNNCC	4 cut(s)	130, 588, 701, 727
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	737
BspPI	GGATC	2 cut(s)	581, 594
BspT107I	GGYRCC	2 cut(s)	699, 725
BsrDI	GCAATG	1 cut(s)	651
BsrGI	TGTACA	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	208, 302
BssMI	GATC	2 cut(s)	229, 586
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	250, 442
Bst6I	CTCTTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	2 cut(s)	55, 497
BstAUI	TGTACA	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	4 cut(s)	392, 461, 596, 672
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	232, 589
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	229, 586
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 163, 175, 187, 497, 575
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	3 cut(s)	49, 62, 667
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	2 cut(s)	38, 708
BstV1I	GCAGC	9 cut(s)	166, 178, 190, 200, 203, 503, 679, 694, 722
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	413, 605
BtsCI	GGATG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	737
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	2 cut(s)	497, 523
Cfr13I	GGNCC	2 cut(s)	411, 604
Csp6I	GTAC	2 cut(s)	15, 614
CviAII	CATG	7 cut(s)	46, 50, 59, 192, 296, 664, 689
CviQI	GTAC	2 cut(s)	15, 614
DdeI	CTNAG	4 cut(s)	392, 461, 596, 672
DpnI	GATC	2 cut(s)	231, 588
DpnII	GATC	2 cut(s)	229, 586
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	37, 460
Eco88I	CYCGRG	2 cut(s)	25, 301
EcoRII	CCWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	37, 460
FaeI	CATG	7 cut(s)	49, 53, 62, 195, 299, 667, 692
FatI	CATG	7 cut(s)	45, 49, 58, 191, 295, 663, 688
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	9 cut(s)	155, 167, 179, 214, 217, 492, 693, 708, 711
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	2 cut(s)	37, 460
Fsp4HI	GCNGC	9 cut(s)	155, 167, 179, 214, 217, 492, 693, 708, 711
GluI	GCNGC	9 cut(s)	155, 167, 179, 214, 217, 492, 693, 708, 711
HaeIII	GGCC	2 cut(s)	413, 605
Hin1II	CATG	7 cut(s)	49, 53, 62, 195, 299, 667, 692
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	6 cut(s)	4, 83, 291, 310, 354, 676
HphI	GGTGA	2 cut(s)	126, 239
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	6 cut(s)	88, 234, 347, 464, 525, 675
Hpy188III	TCNNGA	5 cut(s)	253, 381, 453, 590, 743
Hpy8I	GTNNAC	1 cut(s)	541
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	2 cut(s)	577, 695
HpyCH4III	ACNGT	2 cut(s)	250, 442
HpyCH4V	TGCA	8 cut(s)	49, 58, 166, 219, 242, 500, 710, 732
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 163, 175, 187, 497, 575
HpyF3I	CTNAG	4 cut(s)	392, 461, 596, 672
Hsp92II	CATG	7 cut(s)	49, 53, 62, 195, 299, 667, 692
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	229, 586
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	8 cut(s)	26, 82, 194, 221, 530, 603, 728, 742
Lsp1109I	GCAGC	9 cut(s)	166, 178, 190, 200, 203, 503, 679, 694, 722
MalI	GATC	2 cut(s)	231, 588
MboI	GATC	2 cut(s)	229, 586
MboII	GAAGA	3 cut(s)	101, 319, 369
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	3 cut(s)	37, 264, 460
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	4 cut(s)	13, 92, 363, 670
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	9 cut(s)	142, 297, 370, 377, 470, 531, 550, 632, 681
Mph1103I	ATGCAT	1 cut(s)	51
MseI	TTAA	3 cut(s)	341, 404, 551
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	2 cut(s)	219, 563
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	6 cut(s)	55, 163, 175, 187, 497, 575
NdeII	GATC	2 cut(s)	229, 586
NlaIII	CATG	7 cut(s)	49, 53, 62, 195, 299, 667, 692
NlaIV	GGNNCC	4 cut(s)	130, 588, 701, 727
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	3 cut(s)	49, 62, 667
PaeI	GCATGC	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	737
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	2 cut(s)	219, 563
PfeI	GAWTC	2 cut(s)	291, 310
PkrI	GCNGC	9 cut(s)	156, 168, 180, 215, 218, 493, 694, 709, 712
PleI	GAGTC	4 cut(s)	12, 91, 362, 670
PpsI	GAGTC	4 cut(s)	12, 91, 362, 670
PscI	ACATGT	1 cut(s)	663
PshBI	ATTAAT	2 cut(s)	341, 551
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	130, 588, 701, 727
PspPI	GGNCC	2 cut(s)	411, 604
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	2 cut(s)	497, 523
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	2 cut(s)	16, 615
RsaNI	GTAC	2 cut(s)	15, 614
SaqAI	TTAA	3 cut(s)	341, 404, 551
SatI	GCNGC	9 cut(s)	155, 167, 179, 214, 217, 492, 693, 708, 711
Sau3AI	GATC	2 cut(s)	229, 586
Sau96I	GGNCC	2 cut(s)	411, 604
SchI	GAGTC	4 cut(s)	13, 92, 363, 670
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	3 cut(s)	37, 264, 460
SfcI	CTRYAG	2 cut(s)	38, 708
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	250, 442
TasI	AATT	1 cut(s)	334
TatI	WGTACW	2 cut(s)	14, 613
TfiI	GAWTC	2 cut(s)	291, 310
Tru1I	TTAA	3 cut(s)	341, 404, 551
Tru9I	TTAA	3 cut(s)	341, 404, 551
TseI	GCWGC	9 cut(s)	154, 166, 178, 213, 216, 491, 692, 707, 710
TspDTI	ATGAA	4 cut(s)	327, 483, 640, 677
TspGWI	ACGGA	1 cut(s)	669
VspI	ATTAAT	2 cut(s)	341, 551
XceI	RCATGY	3 cut(s)	49, 62, 667
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.