Prupe.1G326900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0005818
Physical Location & Seq
Reverse (-)
31083853 .. 31087526
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G326900.1

Sequence Viewer

Length: 750 bp
ATGAGTCCCCAGAGTACATTGAACCCAAGTAGAGCCCTAGAGGGCATGCACGGGGTGCGTGTGGTGCCATATTCACTGTTTGAATCAGAGGAGACTACTCAAGATGGGGACCTTCCTCACTCAACTTGTGGAAGTTCGGCTGTTGGAGCAAATCAGCAACTTTTTATGCAGCGAGTATGGCAGCAAAGACCGCCATGTTTGAAGCCCATCCAGGGCTGCATTCAAGGCGATCACAGTGTTGTAGAAACAGTTGCTAATGTGCTCACTTCACTTCCTTTTATAGTTCTTGGAATCCATGCCCCCAGGAAGAATCTAAATTCAAAGATATATGCTAATTCATTAATTGGAGTTGGAGTCGCCTCAAGTTTATATCATTCTTCAAGAGGAAAACTAAGGCAATATTTAAGATGGGCCGACTATACAATGATAGCCACAGCAACAGTATGTCTCTCAAGAGCCCTCAGAAATGAAAACCCAAAATTGCTGATGGCAGCTTCTGCATTATTTCTACCGATCCAGCCTCTGATGGTTTCAGCCGTTCACACTGGAATAATGGAGGTAGCATTTGCGAAAAGAGCATTGAAAGATCCAGAGCTAAGGACGGCCCACAATGTACATAAGATGTCATCACTAGTGGGAGGTGTGCTTTTTATTGCTGATGACATGTTCCCTCAGACTCCCTTCCTTCATGCTGCCTGGCATCTCGCTGCAGCTGTTGGCGTTAGCACCTGCAATAAGCTTCTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.13

Weight (kDa)

9.04

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 737
Acc36I ACCTGC 1 cut(s) 737
AccB1I GGYRCC 1 cut(s) 64
AciI CCGC 1 cut(s) 191
AclWI GGATC 2 cut(s) 508, 581
AcsI RAATTY 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 2 cut(s) 16, 615
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 7 cut(s) 22, 83, 202, 224, 321, 381, 583
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 3 cut(s) 210, 302, 695
AluBI AGCT 4 cut(s) 494, 595, 713, 739
AluI AGCT 4 cut(s) 494, 595, 713, 739
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 86, 452
AlwI GGATC 2 cut(s) 508, 581
AlwNI CAGNNNCTG 2 cut(s) 497, 523
AoxI GGCC 2 cut(s) 411, 603
ApeKI GCWGC 7 cut(s) 169, 181, 216, 491, 692, 707, 710
ApoI RAATTY 1 cut(s) 316
AseI ATTAAT 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 109, 411, 604
AvaII GGWCC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 64
BanII GRGCYC 2 cut(s) 37, 460
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 7 cut(s) 181, 193, 203, 503, 679, 694, 722
BccI CCATC 5 cut(s) 98, 215, 402, 481, 520
BceAI ACGGC 2 cut(s) 521, 618
BciT130I CCWGG 3 cut(s) 212, 304, 697
BcoDI GTCTC 2 cut(s) 86, 452
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 2 cut(s) 38, 632
BfmI CTRYAG 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 737
BisI GCNGC 7 cut(s) 170, 182, 217, 492, 693, 708, 711
BlsI GCNGC 7 cut(s) 171, 183, 218, 493, 694, 709, 712
Bme1390I CCNGG 3 cut(s) 212, 304, 697
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 109, 411, 604
BmiI GGNNCC 2 cut(s) 66, 110
BmrFI CCNGG 3 cut(s) 212, 304, 697
BmsI GCATC 1 cut(s) 709
Bpu10I CCTNAGC 1 cut(s) 596
BpuEI CTTGAG 3 cut(s) 84, 346, 436
BsaJI CCNNGG 2 cut(s) 211, 302
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 550
BseBI CCWGG 3 cut(s) 212, 304, 697
BseDI CCNNGG 2 cut(s) 211, 302
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 2 cut(s) 475, 686
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 7 cut(s) 181, 193, 203, 503, 679, 694, 722
BshFI GGCC 2 cut(s) 413, 605
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 86, 452
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 2 cut(s) 413, 605
Bsp1286I GDGCHC 3 cut(s) 37, 264, 460
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 3 cut(s) 229, 513, 586
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 413, 605
BspCNI CTCAG 2 cut(s) 474, 685
BspLI GGNNCC 2 cut(s) 66, 110
BspMAI CTGCAG 1 cut(s) 712
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 2 cut(s) 508, 581
BspT107I GGYRCC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 613
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 211, 302
BssMI GATC 3 cut(s) 229, 513, 586
Bst2UI CCWGG 3 cut(s) 212, 304, 697
Bst4CI ACNGT 4 cut(s) 78, 236, 250, 442
BstAPI GCANNNNNTGC 2 cut(s) 55, 497
BstAUI TGTACA 1 cut(s) 613
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 4 cut(s) 392, 461, 596, 672
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 3 cut(s) 232, 516, 589
BstMAI GTCTC 2 cut(s) 86, 452
BstMBI GATC 3 cut(s) 229, 513, 586
BstMWI GCNNNNNNNGC 8 cut(s) 55, 64, 146, 178, 190, 225, 497, 575
BstNI CCWGG 3 cut(s) 212, 304, 697
BstNSI RCATGY 2 cut(s) 49, 667
BstSCI CCNGG 3 cut(s) 210, 302, 695
BstSFI CTRYAG 1 cut(s) 708
BstV1I GCAGC 7 cut(s) 181, 193, 203, 503, 679, 694, 722
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 2 cut(s) 413, 605
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 3 cut(s) 74, 241, 543
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 1 cut(s) 47
CaiI CAGNNNCTG 2 cut(s) 497, 523
Cfr13I GGNCC 3 cut(s) 109, 411, 604
Csp6I GTAC 2 cut(s) 15, 614
CviAII CATG 5 cut(s) 46, 195, 296, 664, 689
CviQI GTAC 2 cut(s) 15, 614
DdeI CTNAG 4 cut(s) 392, 461, 596, 672
DpnI GATC 3 cut(s) 231, 515, 588
DpnII GATC 3 cut(s) 229, 513, 586
DraIII CACNNNGTG 1 cut(s) 55
Eco24I GRGCYC 2 cut(s) 37, 460
Eco47I GGWCC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 210, 302, 695
EcoT38I GRGCYC 2 cut(s) 37, 460
FaeI CATG 5 cut(s) 49, 198, 299, 667, 692
FaqI GGGAC 1 cut(s) 122
FatI CATG 5 cut(s) 45, 194, 295, 663, 688
Fnu4HI GCNGC 7 cut(s) 170, 182, 217, 492, 693, 708, 711
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 2 cut(s) 37, 460
Fsp4HI GCNGC 7 cut(s) 170, 182, 217, 492, 693, 708, 711
FspBI CTAG 2 cut(s) 38, 632
GluI GCNGC 7 cut(s) 170, 182, 217, 492, 693, 708, 711
HaeIII GGCC 2 cut(s) 413, 605
Hin1II CATG 5 cut(s) 49, 198, 299, 667, 692
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 6 cut(s) 4, 83, 291, 310, 354, 676
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 4 cut(s) 88, 464, 525, 675
Hpy188III TCNNGA 5 cut(s) 101, 381, 453, 590, 743
Hpy8I GTNNAC 1 cut(s) 541
HpyAV CCTTC 3 cut(s) 122, 691, 695
HpyCH4III ACNGT 4 cut(s) 78, 236, 250, 442
HpyCH4V TGCA 6 cut(s) 49, 169, 219, 500, 710, 732
HpyF10VI GCNNNNNNNGC 8 cut(s) 55, 64, 146, 178, 190, 225, 497, 575
HpyF3I CTNAG 4 cut(s) 392, 461, 596, 672
Hsp92II CATG 5 cut(s) 49, 198, 299, 667, 692
Kzo9I GATC 3 cut(s) 229, 513, 586
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 7 cut(s) 181, 193, 203, 503, 679, 694, 722
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 38, 632
MalI GATC 3 cut(s) 231, 515, 588
MboI GATC 3 cut(s) 229, 513, 586
MboII GAAGA 2 cut(s) 319, 369
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 3 cut(s) 37, 264, 460
MluCI AATT 4 cut(s) 316, 334, 342, 479
MlyI GAGTC 3 cut(s) 13, 363, 670
MmeI TCCRAC 2 cut(s) 124, 331
MseI TTAA 2 cut(s) 341, 404
MspA1I CMGCKG 1 cut(s) 713
MspR9I CCNGG 3 cut(s) 212, 304, 697
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 3 cut(s) 212, 304, 697
MwoI GCNNNNNNNGC 8 cut(s) 55, 64, 146, 178, 190, 225, 497, 575
NdeII GATC 3 cut(s) 229, 513, 586
NlaIII CATG 5 cut(s) 49, 198, 299, 667, 692
NlaIV GGNNCC 2 cut(s) 66, 110
NspI RCATGY 2 cut(s) 49, 667
PaeI GCATGC 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 737
PciI ACATGT 1 cut(s) 663
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 83, 291, 310
PkrI GCNGC 7 cut(s) 171, 183, 218, 493, 694, 709, 712
PleI GAGTC 3 cut(s) 12, 362, 670
PpsI GAGTC 3 cut(s) 12, 362, 670
PpuMI RGGWCCY 1 cut(s) 109
PscI ACATGT 1 cut(s) 663
PshBI ATTAAT 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 3 cut(s) 210, 302, 695
PspGI CCWGG 3 cut(s) 210, 302, 695
PspN4I GGNNCC 2 cut(s) 66, 110
PspPI GGNCC 3 cut(s) 109, 411, 604
PspPPI RGGWCCY 1 cut(s) 109
PstI CTGCAG 1 cut(s) 712
PstNI CAGNNNCTG 2 cut(s) 497, 523
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 2 cut(s) 16, 615
RsaNI GTAC 2 cut(s) 15, 614
SaqAI TTAA 2 cut(s) 341, 404
SatI GCNGC 7 cut(s) 170, 182, 217, 492, 693, 708, 711
Sau3AI GATC 3 cut(s) 229, 513, 586
Sau96I GGNCC 3 cut(s) 109, 411, 604
SchI GAGTC 3 cut(s) 13, 363, 670
ScrFI CCNGG 3 cut(s) 212, 304, 697
SduI GDGCHC 3 cut(s) 37, 264, 460
SetI ASST 8 cut(s) 114, 496, 561, 597, 643, 715, 731, 741
SfaNI GCATC 1 cut(s) 709
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 3 cut(s) 99, 361, 451
SmoI CTYRAG 3 cut(s) 99, 361, 451
SpeI ACTAGT 1 cut(s) 631
SphI GCATGC 1 cut(s) 49
Sse9I AATT 4 cut(s) 316, 334, 342, 479
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 401
SspMI CTAG 2 cut(s) 38, 632
StyD4I CCNGG 3 cut(s) 210, 302, 695
TaaI ACNGT 4 cut(s) 78, 236, 250, 442
TasI AATT 4 cut(s) 316, 334, 342, 479
TatI WGTACW 2 cut(s) 14, 613
TfiI GAWTC 3 cut(s) 83, 291, 310
Tru1I TTAA 2 cut(s) 341, 404
Tru9I TTAA 2 cut(s) 341, 404
TscAI CASTG 3 cut(s) 81, 241, 550
TseI GCWGC 7 cut(s) 169, 181, 216, 491, 692, 707, 710
TspDTI ATGAA 3 cut(s) 327, 483, 677
TspRI CASTG 3 cut(s) 81, 241, 550
VpaK11BI GGWCC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 341
XapI RAATTY 1 cut(s) 316
XceI RCATGY 2 cut(s) 49, 667
XspI CTAG 2 cut(s) 38, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.