Rh4AG386100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005818
Physical Location & Seq
Reverse (-)
69256498 .. 69260871
4374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG386100.1

Sequence Viewer

Length: 591 bp
ATGTTTTCCAGGCGAGTATGGCAGCACACACCACCATGTTTGAAGCCTATTCAGGGTTGCATTCACGGCGATCGTAACCTCGCAGAAAGAGCTGTTAATGTGCTCACTTCACTTCCTTTCATAGTTCTTGGGATCCATGCCCCAAGGAAGAATCTAAACACCAAGCTATATGCTAATTCATTAATTGGAGTTGGAGTTGCCTCGAGTTTATATCATTGTTCAAGAGGAAAACTAAGGAAATATATGAGATGGGCTGACTATACAATGATAGCTACAGCAACAGTATGTCTCTCAAGAGCACTCAGAAATGAAAACCCAAAATTGCTCATGGCAGCTTCTGCAGTATTTCTACCTATCCAGCCTCTGATGGTTTCAGCTGTTCATACTGGAATGATGGAGGTAGCGTTTGCCAAAAGAGCGTTAAAAGATCCAGAGCTAAGGATGGCACACAATGTGCACAAGATGTCGTCATTATTGGGTGGTGTACTTTTTATTGCAGATGATGTGTTTCCCAGAACTCCATACCTTCACGCTGCATGGCATCTTGCTGCAGCTGTAGGTGTTAGCACCTGCAATAAGCTTCTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.7

Weight (kDa)

9.98

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 578
Acc36I ACCTGC 1 cut(s) 578
AclWI GGATC 3 cut(s) 127, 140, 422
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 43, 222
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 8 cut(s) 92, 166, 272, 335, 377, 436, 554, 580
AluI AGCT 8 cut(s) 92, 166, 272, 335, 377, 436, 554, 580
Alw21I GWGCWC 3 cut(s) 105, 301, 459
Alw26I GTCTC 1 cut(s) 293
Alw44I GTGCAC 1 cut(s) 455
AlwI GGATC 3 cut(s) 127, 140, 422
AlwNI CAGNNNCTG 2 cut(s) 338, 364
Ama87I CYCGRG 2 cut(s) 202, 584
ApaLI GTGCAC 1 cut(s) 455
ApeKI GCWGC 5 cut(s) 22, 332, 533, 548, 551
AseI ATTAAT 1 cut(s) 182
AvaI CYCGRG 2 cut(s) 202, 584
BaeGI GKGCMC 1 cut(s) 459
BamHI GGATCC 1 cut(s) 132
Bbv12I GWGCWC 3 cut(s) 105, 301, 459
BbvI GCAGC 5 cut(s) 34, 344, 520, 535, 563
BccI CCATC 4 cut(s) 243, 361, 388, 436
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 4 cut(s) 273, 339, 549, 555
BfuAI ACCTGC 1 cut(s) 578
BisI GCNGC 5 cut(s) 23, 333, 534, 549, 552
BlsI GCNGC 5 cut(s) 24, 334, 535, 550, 553
Bme1390I CCNGG 1 cut(s) 10
BmeT110I CYCGRG 2 cut(s) 202, 584
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 550
Bpu10I CCTNAGC 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 143
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 389, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 5 cut(s) 34, 344, 520, 535, 563
Bsh1285I CGRYCG 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 3 cut(s) 105, 301, 459
BsiHKCI CYCGRG 2 cut(s) 202, 584
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 60
BsoBI CYCGRG 2 cut(s) 202, 584
Bsp1286I GDGCHC 3 cut(s) 105, 301, 459
Bsp143I GATC 3 cut(s) 70, 132, 427
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 134
BspMAI CTGCAG 2 cut(s) 343, 553
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 3 cut(s) 127, 140, 422
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 3 cut(s) 70, 132, 427
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 338
BstDEI CTNAG 3 cut(s) 233, 302, 437
BstF5I GGATG 1 cut(s) 447
BstKTI GATC 3 cut(s) 73, 135, 430
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 3 cut(s) 70, 132, 427
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 5 cut(s) 19, 66, 89, 338, 416
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 4 cut(s) 273, 339, 549, 555
BstSLI GKGCMC 1 cut(s) 459
BstV1I GCAGC 5 cut(s) 34, 344, 520, 535, 563
BstX2I RGATCY 2 cut(s) 132, 427
BstYI RGATCY 2 cut(s) 132, 427
BtsCI GGATG 1 cut(s) 447
BveI ACCTGC 1 cut(s) 578
CaiI CAGNNNCTG 2 cut(s) 338, 364
Csp6I GTAC 1 cut(s) 485
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 4 cut(s) 36, 137, 328, 537
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 3 cut(s) 233, 302, 437
DpnI GATC 3 cut(s) 72, 134, 429
DpnII GATC 3 cut(s) 70, 132, 427
DraIII CACNNNGTG 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 143
Eco88I CYCGRG 2 cut(s) 202, 584
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 4 cut(s) 39, 140, 331, 540
FatI CATG 4 cut(s) 35, 136, 327, 536
Fnu4HI GCNGC 5 cut(s) 23, 333, 534, 549, 552
FokI GGATG 1 cut(s) 454
Fsp4HI GCNGC 5 cut(s) 23, 333, 534, 549, 552
GluI GCNGC 5 cut(s) 23, 333, 534, 549, 552
Hin1II CATG 4 cut(s) 39, 140, 331, 540
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 457, 485
Hpy188I TCNGA 2 cut(s) 305, 366
Hpy188III TCNNGA 4 cut(s) 222, 294, 431, 584
Hpy8I GTNNAC 2 cut(s) 457, 485
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 7 cut(s) 60, 341, 457, 497, 536, 551, 573
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 66, 89, 338, 416
HpyF3I CTNAG 3 cut(s) 233, 302, 437
Hsp92II CATG 4 cut(s) 39, 140, 331, 540
Kzo9I GATC 3 cut(s) 70, 132, 427
LpnPI CCDG 7 cut(s) 22, 38, 371, 372, 444, 526, 583
Lsp1109I GCAGC 5 cut(s) 34, 344, 520, 535, 563
LweI GCATC 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 72, 134, 429
MboI GATC 3 cut(s) 70, 132, 427
MboII GAAGA 1 cut(s) 160
MflI RGATCY 2 cut(s) 132, 427
MhlI GDGCHC 3 cut(s) 105, 301, 459
MluCI AATT 3 cut(s) 175, 183, 320
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 5 cut(s) 89, 211, 218, 372, 391
MseI TTAA 3 cut(s) 96, 182, 422
MslI CAYNNNNRTG 1 cut(s) 34
MspA1I CMGCKG 2 cut(s) 377, 554
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 60
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 5 cut(s) 19, 66, 89, 338, 416
NdeII GATC 3 cut(s) 70, 132, 427
NlaIII CATG 4 cut(s) 39, 140, 331, 540
NlaIV GGNNCC 1 cut(s) 134
PaeR7I CTCGAG 2 cut(s) 202, 584
PaqCI CACCTGC 1 cut(s) 578
PctI GAATGC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 5 cut(s) 24, 334, 535, 550, 553
Ple19I CGATCG 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 134
PspXI VCTCGAGB 1 cut(s) 202
PstI CTGCAG 2 cut(s) 343, 553
PstNI CAGNNNCTG 2 cut(s) 338, 364
PsuI RGATCY 2 cut(s) 132, 427
PvuI CGATCG 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 377, 554
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 34
SaqAI TTAA 3 cut(s) 96, 182, 422
SatI GCNGC 5 cut(s) 23, 333, 534, 549, 552
Sau3AI GATC 3 cut(s) 70, 132, 427
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 3 cut(s) 105, 301, 459
SfaNI GCATC 1 cut(s) 550
SfcI CTRYAG 4 cut(s) 273, 339, 549, 555
Sfr274I CTCGAG 2 cut(s) 202, 584
SlaI CTCGAG 2 cut(s) 202, 584
SmiMI CAYNNNNRTG 1 cut(s) 34
SmlI CTYRAG 3 cut(s) 202, 292, 584
SmoI CTYRAG 3 cut(s) 202, 292, 584
Sse9I AATT 3 cut(s) 175, 183, 320
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 203, 585
TasI AATT 3 cut(s) 175, 183, 320
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 3 cut(s) 96, 182, 422
Tru9I TTAA 3 cut(s) 96, 182, 422
TseI GCWGC 5 cut(s) 22, 332, 533, 548, 551
TspDTI ATGAA 4 cut(s) 109, 168, 324, 371
VneI GTGCAC 1 cut(s) 455
VspI ATTAAT 1 cut(s) 182
XhoI CTCGAG 2 cut(s) 202, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.