Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005818

Physical Location & Seq

Genomic Coordinates Reverse (-)

62261069 .. 62264978

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGTCCCCAGAGTACATTGAATCCTTGTAGAGCCCTAGAGGGCATGCATGGGGTACATGTGGTGCCTAGTTCACGGTTCGAATCAGAAGAGACTACTCAAGATGGGGACTTTGCTCACTCAACTTGTACAAGTTCGGCTATTGGAACAAATTTGTCTATGCAGCGAGTATGGCAGCACACACCACCATGTTTGAAGCCTATTCAGGGTTGCATTCACGGCGATCGTAACCTCGCAGAAACAGCTGTTAATGTGCTCACTTCACTTCCTTTCATAGTTCTTGGGATCCATGCCCCAAGGAAGAATCTAAACACCAAGCTATATGCTAATTCATTAATTGGAGTTGGAGTTGCCTCGAGTTTATATCATTGTTCAAGAGGAAAACTAAGGAAATATATGAGATGGGCTGACTATACAATGATAGCTACAGCAACAGTATGTCTCTCAAGAGCACTCAGAAATGAAAACCCAAAATTGCTCATGGCAGCTTCAGCAGTATTTCTACCTATCCAGCCTCTGATGGTTTCAGCTGTTCATACTGGAATGATGGAGGTAGCGTTTGCCAAAAGAGCATTAAAAGATCCAGAGCTAAGGATGGCACACAATGTACATAAGATGTCGTCATTATTGGGTGGTGTACTTTTTATTGCAGATGATGTGTTTCCCAGAACTCCATACCTTCATGCTGCATGGCATCTTGCTGCAGCTGTAGGTGTTAGCACCTGCAATAAGCTTCTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.97

Weight (kDa)

9.16

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G70900
fragaria_vesca	FvH4_4g32670
malus_domestica	MD13G1023800.v1.1 MD16G1026500.v1.1
prunus_persica	Prupe.1G326900_v2.0.a1
pyrus_communis	pycom13g02220 pycom16g02230
rosa_chinensis	RchiOBHm_Chr4g0441581
rosa_laevigata	RLG00000006083
rosa_multiflora	Rmu_sc0000353.1_g000027
rosa_roxburghii	Rroxscaffold_5G00382420
rosa_rugosa	Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334800
rosa_samantha	Rh4AG386100 Rh4BG400300 Rh4CG415200 Rh4DG393000
rosa_wichuraiana	Rw4G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	64
AclWI	GGATC	3 cut(s)	280, 293, 575
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	5 cut(s)	16, 57, 130, 609, 639
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	22, 196, 375
AluBI	AGCT	8 cut(s)	245, 319, 425, 488, 530, 589, 707, 733
AluI	AGCT	8 cut(s)	245, 319, 425, 488, 530, 589, 707, 733
Alw21I	GWGCWC	2 cut(s)	258, 454
Alw26I	GTCTC	2 cut(s)	86, 446
AlwI	GGATC	3 cut(s)	280, 293, 575
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	2 cut(s)	355, 737
ApeKI	GCWGC	6 cut(s)	163, 175, 485, 686, 701, 704
ApoI	RAATTY	1 cut(s)	151
AseI	ATTAAT	1 cut(s)	335
AsuII	TTCGAA	1 cut(s)	81
AvaI	CYCGRG	2 cut(s)	355, 737
BamHI	GGATCC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	258, 454
BbvI	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
BccI	CCATC	5 cut(s)	98, 396, 514, 541, 589
BceAI	ACGGC	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	86, 446
BfaI	CTAG	2 cut(s)	38, 69
BfmI	CTRYAG	3 cut(s)	426, 702, 708
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
BlsI	GCNGC	6 cut(s)	165, 177, 487, 688, 703, 706
BmeT110I	CYCGRG	2 cut(s)	355, 737
BmiI	GGNNCC	2 cut(s)	66, 287
BmsI	GCATC	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	590
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	84, 430
BsaJI	CCNNGG	1 cut(s)	296
BsaXI	ACNNNNNCTCC	4 cut(s)	333, 363, 542, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	1 cut(s)	544
BseXI	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
Bsh1285I	CGRYCG	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	258, 454
BsiHKCI	CYCGRG	2 cut(s)	355, 737
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	86, 446
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	213
BsoBI	CYCGRG	2 cut(s)	355, 737
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	3 cut(s)	37, 258, 454
Bsp1407I	TGTACA	2 cut(s)	128, 607
Bsp143I	GATC	3 cut(s)	223, 285, 580
BspCNI	CTCAG	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	66, 287
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	3 cut(s)	280, 293, 575
BspT104I	TTCGAA	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	64
BsrGI	TGTACA	2 cut(s)	128, 607
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	3 cut(s)	223, 285, 580
BssT1I	CCWWGG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	78, 436
Bst6I	CTCTTC	1 cut(s)	84
BstAUI	TGTACA	2 cut(s)	128, 607
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	386, 455, 590
BstF5I	GGATG	1 cut(s)	600
BstKTI	GATC	3 cut(s)	226, 288, 583
BstMAI	GTCTC	2 cut(s)	86, 446
BstMBI	GATC	3 cut(s)	223, 285, 580
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 219, 242, 491, 569
BstNSI	RCATGY	2 cut(s)	49, 62
BstSFI	CTRYAG	3 cut(s)	426, 702, 708
BstV1I	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
BstX2I	RGATCY	2 cut(s)	285, 580
BstYI	RGATCY	2 cut(s)	285, 580
BtsCI	GGATG	1 cut(s)	600
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	517
Csp6I	GTAC	5 cut(s)	15, 56, 129, 608, 638
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	8 cut(s)	46, 50, 59, 189, 290, 481, 683, 690
CviQI	GTAC	5 cut(s)	15, 56, 129, 608, 638
DdeI	CTNAG	3 cut(s)	386, 455, 590
DpnI	GATC	3 cut(s)	225, 287, 582
DpnII	GATC	3 cut(s)	223, 285, 580
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	2 cut(s)	355, 737
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	8 cut(s)	49, 53, 62, 192, 293, 484, 686, 693
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	8 cut(s)	45, 49, 58, 188, 289, 480, 682, 689
Fnu4HI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
FokI	GGATG	1 cut(s)	607
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
FspBI	CTAG	2 cut(s)	38, 69
GluI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
Hin1II	CATG	8 cut(s)	49, 53, 62, 192, 293, 484, 686, 693
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	4 cut(s)	4, 22, 83, 304
Hpy166II	GTNNAC	2 cut(s)	74, 638
Hpy188I	TCNGA	3 cut(s)	88, 458, 519
Hpy188III	TCNNGA	5 cut(s)	101, 375, 447, 584, 737
Hpy8I	GTNNAC	2 cut(s)	74, 638
HpyAV	CCTTC	1 cut(s)	689
HpyCH4III	ACNGT	2 cut(s)	78, 436
HpyCH4V	TGCA	7 cut(s)	49, 163, 213, 650, 689, 704, 726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 219, 242, 491, 569
HpyF3I	CTNAG	3 cut(s)	386, 455, 590
Hsp92II	CATG	8 cut(s)	49, 53, 62, 192, 293, 484, 686, 693
Kzo9I	GATC	3 cut(s)	223, 285, 580
LpnPI	CCDG	7 cut(s)	23, 191, 524, 525, 597, 679, 736
Lsp1109I	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	2 cut(s)	38, 69
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	225, 287, 582
MboI	GATC	3 cut(s)	223, 285, 580
MboII	GAAGA	2 cut(s)	101, 313
MflI	RGATCY	2 cut(s)	285, 580
MhlI	GDGCHC	3 cut(s)	37, 258, 454
MluCI	AATT	4 cut(s)	151, 328, 336, 473
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	34, 242, 364, 371, 525, 544
Mph1103I	ATGCAT	1 cut(s)	51
MseI	TTAA	3 cut(s)	249, 335, 575
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	3 cut(s)	245, 530, 707
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	5 cut(s)	172, 219, 242, 491, 569
NdeII	GATC	3 cut(s)	223, 285, 580
NlaIII	CATG	8 cut(s)	49, 53, 62, 192, 293, 484, 686, 693
NlaIV	GGNNCC	2 cut(s)	66, 287
NsiI	ATGCAT	1 cut(s)	51
NspI	RCATGY	2 cut(s)	49, 62
NspV	TTCGAA	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	49
PaeR7I	CTCGAG	2 cut(s)	355, 737
PaqCI	CACCTGC	1 cut(s)	731
PciI	ACATGT	1 cut(s)	58
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	22, 83, 304
PkrI	GCNGC	6 cut(s)	165, 177, 487, 688, 703, 706
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	58
PshBI	ATTAAT	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	66, 287
PspXI	VCTCGAGB	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	285, 580
PvuI	CGATCG	1 cut(s)	226
PvuII	CAGCTG	3 cut(s)	245, 530, 707
RsaI	GTAC	5 cut(s)	16, 57, 130, 609, 639
RsaNI	GTAC	5 cut(s)	15, 56, 129, 608, 638
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	249, 335, 575
SatI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
Sau3AI	GATC	3 cut(s)	223, 285, 580
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	3 cut(s)	37, 258, 454
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	3 cut(s)	426, 702, 708
Sfr274I	CTCGAG	2 cut(s)	355, 737
SfuI	TTCGAA	1 cut(s)	81
SlaI	CTCGAG	2 cut(s)	355, 737
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	4 cut(s)	99, 355, 445, 737
SmoI	CTYRAG	4 cut(s)	99, 355, 445, 737
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	4 cut(s)	151, 328, 336, 473
SspMI	CTAG	2 cut(s)	38, 69
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	78, 436
TaqI	TCGA	3 cut(s)	81, 356, 738
TasI	AATT	4 cut(s)	151, 328, 336, 473
TatI	WGTACW	4 cut(s)	14, 128, 607, 637
TfiI	GAWTC	3 cut(s)	22, 83, 304
Tru1I	TTAA	3 cut(s)	249, 335, 575
Tru9I	TTAA	3 cut(s)	249, 335, 575
TseI	GCWGC	6 cut(s)	163, 175, 485, 686, 701, 704
TspDTI	ATGAA	5 cut(s)	262, 321, 477, 524, 671
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	2 cut(s)	49, 62
XhoI	CTCGAG	2 cut(s)	355, 737
XspI	CTAG	2 cut(s)	38, 69
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.