Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005818

Physical Location & Seq

Genomic Coordinates Reverse (-)

31247841 .. 31251731

Gene Structure 3891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGTCCCCAGAGTACATTGAATCCTAGTAGAGCCCTAGCGGGCGTGCATGGGGTACATATTGTGCCTTCTTCACGGTTCGAATCAGAAGAGACTACTCAAGATGGGGACTTTGCTCACTCAACTTGTACAAGTTTGGCTATTGGAACAAGTTTGTCTATGCAGCGAGTATGGCAGCAAGCACCACCATTTTTGAAGCCTATCCAGGGTTGCATTCACGGTGATCGTGACCTTGCAGAAAGAGCTGTTAATGTGCTCACTTCACTTCCTTTCATAGTTCTTGGGATCCAAGCCCCAAGGAAGAATCTAAACACCAAGCTATATGCTAATTCATTAATTGGAGTTGGTGTTGCCTCAAGTTTATATCATTCTTCTAGAGGAAAACTAAGGAAATATTTGAGATGGGCTGACTATACAATGATAGCTACAGCAACAGTGTGCCTCTCAAGAGCCCTCAGAAATGAAAACTCAAAATTCCTCATGGCAGCTTCTGCGGTATTTCTCCCTATCCAGCCTCTGATGGTTTCAGCTGTTCATACTGGAATGATGGAGGTAGCGTTTGCCAAAAGAGCATTAAAAGATCCAGAGCTAAAGATGGCACATAATGTACATAAGCTGTCGTCATTACTGGGTGGTGTACTTTTTATTGCAGATGATGTGTTTCCCAAAACTCCATACCTTCATGCTGCATGGCATCTTGCTGCAGCTGTAGGTGTTGGCACCTGCAATAAGCTTCTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.82

Weight (kDa)

9.48

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G70900
fragaria_vesca	FvH4_4g32670
malus_domestica	MD13G1023800.v1.1 MD16G1026500.v1.1
prunus_persica	Prupe.1G326900_v2.0.a1
pyrus_communis	pycom13g02220 pycom16g02230
rosa_chinensis	RchiOBHm_Chr4g0441581
rosa_laevigata	RLG00000006083
rosa_multiflora	Rmu_sc0000353.1_g000027
rosa_roxburghii	Rroxscaffold_5G00382420
rosa_rugosa	Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334800
rosa_samantha	Rh4AG386100 Rh4BG400300 Rh4CG415200 Rh4DG393000
rosa_wichuraiana	Rw4G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	719
AciI	CCGC	2 cut(s)	41, 494
AclWI	GGATC	3 cut(s)	280, 293, 575
AcsI	RAATTY	1 cut(s)	473
AfaI	GTAC	5 cut(s)	16, 57, 130, 609, 639
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	22, 196
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	9 cut(s)	245, 319, 425, 488, 530, 589, 616, 707, 733
AluI	AGCT	9 cut(s)	245, 319, 425, 488, 530, 589, 616, 707, 733
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	3 cut(s)	280, 293, 575
AlwNI	CAGNNNCTG	2 cut(s)	491, 517
Ama87I	CYCGRG	1 cut(s)	737
ApeKI	GCWGC	6 cut(s)	163, 175, 485, 686, 701, 704
ApoI	RAATTY	1 cut(s)	473
AseI	ATTAAT	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	737
BamHI	GGATCC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	2 cut(s)	37, 454
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
BccI	CCATC	5 cut(s)	98, 396, 514, 541, 589
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	3 cut(s)	27, 38, 375
BfmI	CTRYAG	3 cut(s)	426, 702, 708
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
BlsI	GCNGC	6 cut(s)	165, 177, 487, 688, 703, 706
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	287, 721
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	1 cut(s)	703
BmuI	ACTGGG	1 cut(s)	638
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	3 cut(s)	84, 340, 430
BsaJI	CCNNGG	2 cut(s)	205, 296
BsaXI	ACNNNNNCTCC	4 cut(s)	333, 363, 542, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	544, 633
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	205, 296
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	2 cut(s)	544, 633
BseXI	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
BshNI	GGYRCC	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	737
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	737
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	3 cut(s)	37, 258, 454
Bsp1407I	TGTACA	2 cut(s)	128, 607
Bsp143I	GATC	3 cut(s)	223, 285, 580
BspACI	CCGC	2 cut(s)	41, 494
BspCNI	CTCAG	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	287, 721
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	3 cut(s)	280, 293, 575
BspT104I	TTCGAA	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	719
BsrGI	TGTACA	2 cut(s)	128, 607
BsrI	ACTGG	2 cut(s)	544, 633
BssECI	CCNNGG	2 cut(s)	205, 296
BssMI	GATC	3 cut(s)	223, 285, 580
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	3 cut(s)	78, 221, 436
Bst6I	CTCTTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstAUI	TGTACA	2 cut(s)	128, 607
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	43, 47, 180
BstDEI	CTNAG	2 cut(s)	386, 455
BstKTI	GATC	3 cut(s)	226, 288, 583
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	223, 285, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 242, 491, 569
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	3 cut(s)	426, 702, 708
BstV1I	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
BstX2I	RGATCY	2 cut(s)	285, 580
BstYI	RGATCY	2 cut(s)	285, 580
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	43, 47, 180
CaiI	CAGNNNCTG	2 cut(s)	491, 517
Csp6I	GTAC	5 cut(s)	15, 56, 129, 608, 638
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	4 cut(s)	50, 481, 683, 690
CviQI	GTAC	5 cut(s)	15, 56, 129, 608, 638
DdeI	CTNAG	2 cut(s)	386, 455
DpnI	GATC	3 cut(s)	225, 287, 582
DpnII	GATC	3 cut(s)	223, 285, 580
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	2 cut(s)	37, 454
Eco88I	CYCGRG	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	296
EcoT38I	GRGCYC	2 cut(s)	37, 454
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	4 cut(s)	53, 484, 686, 693
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	4 cut(s)	49, 480, 682, 689
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
FriOI	GRGCYC	2 cut(s)	37, 454
Fsp4HI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
FspBI	CTAG	3 cut(s)	27, 38, 375
GluI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
Hin1II	CATG	4 cut(s)	53, 484, 686, 693
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	4 cut(s)	4, 22, 83, 304
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	3 cut(s)	88, 458, 519
Hpy188III	TCNNGA	6 cut(s)	101, 227, 375, 447, 584, 737
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	2 cut(s)	78, 689
HpyCH4III	ACNGT	3 cut(s)	78, 221, 436
HpyCH4V	TGCA	8 cut(s)	49, 163, 213, 236, 650, 689, 704, 726
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 242, 491, 569
HpyF3I	CTNAG	2 cut(s)	386, 455
Hsp92II	CATG	4 cut(s)	53, 484, 686, 693
Kzo9I	GATC	3 cut(s)	223, 285, 580
LpnPI	CCDG	8 cut(s)	23, 191, 218, 524, 525, 597, 614, 736
Lsp1109I	GCAGC	6 cut(s)	175, 187, 497, 673, 688, 716
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	3 cut(s)	27, 38, 375
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	225, 287, 582
MboI	GATC	3 cut(s)	223, 285, 580
MboII	GAAGA	4 cut(s)	63, 101, 313, 363
MflI	RGATCY	2 cut(s)	285, 580
MhlI	GDGCHC	3 cut(s)	37, 258, 454
MluCI	AATT	3 cut(s)	328, 336, 473
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	364, 371, 452, 464, 488, 525, 544
MseI	TTAA	3 cut(s)	249, 335, 575
MspA1I	CMGCKG	2 cut(s)	530, 707
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	172, 242, 491, 569
NdeII	GATC	3 cut(s)	223, 285, 580
NlaIII	CATG	4 cut(s)	53, 484, 686, 693
NlaIV	GGNNCC	2 cut(s)	287, 721
NmuCI	GTSAC	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	737
PaqCI	CACCTGC	1 cut(s)	731
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	22, 83, 304
PkrI	GCNGC	6 cut(s)	165, 177, 487, 688, 703, 706
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	287, 721
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	2 cut(s)	491, 517
PsuI	RGATCY	2 cut(s)	285, 580
PvuII	CAGCTG	2 cut(s)	530, 707
RsaI	GTAC	5 cut(s)	16, 57, 130, 609, 639
RsaNI	GTAC	5 cut(s)	15, 56, 129, 608, 638
SaqAI	TTAA	3 cut(s)	249, 335, 575
SatI	GCNGC	6 cut(s)	164, 176, 486, 687, 702, 705
Sau3AI	GATC	3 cut(s)	223, 285, 580
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	3 cut(s)	37, 258, 454
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	3 cut(s)	426, 702, 708
Sfr274I	CTCGAG	1 cut(s)	737
SfuI	TTCGAA	1 cut(s)	81
SlaI	CTCGAG	1 cut(s)	737
SmlI	CTYRAG	4 cut(s)	99, 355, 445, 737
SmoI	CTYRAG	4 cut(s)	99, 355, 445, 737
Sse9I	AATT	3 cut(s)	328, 336, 473
SsiI	CCGC	2 cut(s)	41, 494
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	3 cut(s)	27, 38, 375
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	3 cut(s)	78, 221, 436
TaqI	TCGA	2 cut(s)	81, 738
TasI	AATT	3 cut(s)	328, 336, 473
TatI	WGTACW	4 cut(s)	14, 128, 607, 637
TfiI	GAWTC	3 cut(s)	22, 83, 304
Tru1I	TTAA	3 cut(s)	249, 335, 575
Tru9I	TTAA	3 cut(s)	249, 335, 575
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	6 cut(s)	163, 175, 485, 686, 701, 704
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	5 cut(s)	262, 321, 477, 524, 671
TspRI	CASTG	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	1 cut(s)	473
XbaI	TCTAGA	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	737
XspI	CTAG	3 cut(s)	27, 38, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.