Rorug04G0334700

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001847
Physical Location & Seq
Forward (+)
50900510 .. 50909712
9203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0334700.1

Sequence Viewer

Length: 4347 bp
ATGGAGATCTCTCTGGAAATTGTCAATGTTGGGTTTTTCGTAGTGTTATTGACGTGGGTTTTGCTAGATACACTGAGAAGAAGAAGAAGAGATGGTACTGAAAATGAGACATATTTGAGAGACAGAGCAAGCAGAGGATGTAAAGGTTTTGCTTTGATAACTCTTATTGTAAATGCCTTAATCTCAGTGTTCTACGTTGTTTTTGGAATTTATGACTACTGCGGTAGTGGAAATGTAAGTTTGAAATCAATCTTTTCTGGGATGACTTGGGTTTTGGCAACAATAGTGACAATCTACTCCAAGAACAGAGGTTTTAGTGAGCACAAAAGGTGGCCTTGGGTCCTCATTTTTTGGTGGATCTTCTCCTTCATTTTTTGCTCACTTTCAGTGTGCCTATACTTCATCACCCACTTCTTAAAATCTACAAAGTTGCCAGATATTCTTCCAAAGGCTAACATAGTCGAATTTGCTTCCTTACCTCTGTCAATGTTACTTTGTTGCAATGCTTTGAGTTATGTCCAGAAAGACAGTGATCTTAAAGAACCATTACTCGAGAAGGAGTTCGAAATTCACACCGATAGTTACACTGATGCTGGGATTTGGAGCAAAGTCACATTCCGATGGCTAAATCCACTTTTCAAGAGGGGTCGAAACCAAAAGCTGGAATTATACCATATACCATCTGTCCCTCCTTCAGAAAGAGCAGCAAATGCTTCAGCTTTGCTCGAAGAATCATTCCGGAAACAGAAGATGGAAGATTCTTCATTGCCAAAAGCCATAATTCGGGCCGTATGGAAATCATTAGCTGTAAATGCAGTTTTTGCAGGAGTTAATACTACTGCATCATATATGGGACCATTCCTAATTACAAACTTTGTGAACTATTTACTGGAAAAGCATGATGATTCAAGCATTCATCATGGATTGATTCTTGCATTTATATTCTTCATTGCGAAGACAATGGAATCACTGAGTCAAAGGCAGTGGTATTTTGGTGCTCAGATAATTGGTGTACGCGTACGAGCAGCTCTCAGTGTGTTGATTTACAAGAAGTCTATTTCGATCAAGTATTCTGGTCCAAGCAATGGGAAAATGATTAATTTGATCAATGTGGATGTAGAAAGAATTGGAGACTTCTGCTGGTACATTCATGGAATTTGGTTGCTTCCTCTTCAAGTCTTCTTGGCCTTGGTTATCCTTTACAGGAATCTCGGCGCTGCCCCCTCTGCTGCTGCTCTTATTGCCACAGTTTTGGTCATGGTTTGCAACACACCTTTGGCCAACATGCAAGAAAGGCTTCATTCCAAGATGATGGAGGCGAAGGATTCACGAATTAAAGTAACATCAGAGACTCTCAAAAGCATGCGAGTTTTGAAGCTGCATTCTTGGGAATCCACATTCTTGAAGAAGCTGCTTCAGCTGAGGGAAACTGAGAGGAGTTGGCTGAAGAGATACCTCTATACATGCTCAGTAGTGGCTTTTCTCTTCTGGGCTTCACCTACTCTGGTTTCAGTTGCCACTTTTGGTGTATGCATTATACTCAATACACCATTAAACACAGGAACTGTCTTGTCTGCTTTGGCTACTTTTAGAATTCTTCAAGAGCCCATCTACAACCTCCCAGAGCTCATTTCCATGATTGCTCAAACAAAGGTATCAGTTGATCGTATCAAAGAATTCATCAAAGAAGATCAATTGAAGCTAATTCCTGGTCATACTTCAAAAGAATCCAACGTCATGATTGTAATTGAGACAGGAGAATATGCATGGAAAACAAGTGATCAGAACTTAAAGAAGCCTACAATCAAAATTGTGGAGAAGATAGGGATAATGAAAGGATACAAGGTAGCAATTTGCGGTTCTGTTGGTTCGGGCAAGTCAAGCTTACTAAGTAGTATACTTGGGGAGATTCCCAAAATTTCTGGGGCAGGAGCAAGGGTTTATGGGACAAAAGCTTATGTTCCACAAAGTTCTTGGATTCAAACTGGAACTGTAAGGGAGAATGTGTTGTTTGGCAAGGAGATGATTGAGGGTTATTATGAGAATGTTTTGGAGGCTTGTGCTTTGGACCAGGATGTCAAAATGTGGGAAGATGGAGATTTGACTATAGTGGGGGAGAGAGGGATGAACCTAAGTGGGGGACAAAAACAAAGGATTCAACTGGCAAGAGCAGTCTATAGTGATTCCGATGTATATATCTTGGATGATCCTTTTAGTGCTGTTGATGCACATACAGGAACACACTTGTTCAAGAAATGTCTCTTGCAACACTTGTCTCTAAAGACTGTCATCTATGCTACCCACCAATTAGAATTTCTAGAAGCAGCAGACCTTGTCTTGGTAATTAAAGGTGGTCAGATTGCTCAGTCTGGAAAATATGAAGATTTGATTGCCGACCTCAATGGTGAACTTGTCAGACAAATGGCTGCACATAGGAAATCGTTAGACCAAGTTAACATATGCCAAATAGATGTTTCCTTAAAGAGTAGACCTCATCAAGTTAATCTAATAGAGGTTGTGGAAGAGAAAGGGCCTTTCAACAATGGCACGCTTCCGGAAAAGAGTCACGAAGAAGAAGCAGAAACTGGTCCAGTGAAATTGAGTGTTTATTCCACCTTTGTAACTTCTGCTTATGGAGGTGCTCTTGTCCCAGTTATCCTTCTCTGCCAAGTCCTCTTCCAGGGGCTGCAAATGGGCAGCAACTACTGGATGGCTTGGGGAACAGAGAAGGAAGGTAGGGTCAGTAGAGAGCGATTGATATGGGTATTTATTATGTTGTCTGGAGGGAGCTCCATCTTCATATTGGGAAGGGCAGTTTTTCTGGCAACTATTGCTATACAGACTGCTCAGAGTCTCTTCCTTAGAATGATAACTTCAGTATTCCGAGCACCCATCTCATTTTTCGACTCCACTCCTTCTAGCCGAATCCTGAATAGGTCTTCCACGGATCAAAGCACTGTAGACATGGACATTCCTTATAGATTAGCTGGATTAGCATTTGCACTGATCCAACTAACAAGCATCATAGTCCTTATGTCTCAAGTGGCTTGGCAAGTTTTCCTTCTTTTCCTCGGGGTTCTTGGACTCTCCATATGGTATCAAGCCTATTACATTACCACAGCTAGAGAACTTGCGAGGATGGTTGGAATTCGAAAGGCTCCAATCCTCCATCACTTCTCAGAATCAATCACAGGGGCTGCAACACTTCGTTGTTTCAACCAAGAAAACCGCTTCTTGATGAAGATAATGAACCTCATTGACGATTATTCTCGTGTAGCCTTTCACAATTATGCCACAATGGAATGGTTATCGGTCCGAATCAATTTTCTGTTCAACCTTGTATTCTTCCTTGTTCTTGTCATTTTAGTGAGCTTGCCAAGGTCTGCCATTAACCCTAGTTTGGCAGGACTGGCAGCTACCTATGGTTTGAACCTCAATGTTCTCCAGGCTTGGGTGATATGGAATTTTTGTAATGTGGAAAACAAAATGATATCAGTGGAGAGGATCCTTCAATTCACAAATATTCCAAGTGAGGCACCACTAGTCATTGAAGATTGTAGACCAAACCCTGAATGGCCAACAGTCGGAAAAATTGAACTTGAAAACCTTCAAGTTCAGTATGATCCAGCTCTTCCAATGGTTCTCAAAGGGATCAGTTGCACCTTCCCTGGACAAAAGAAAATTGGAGTTGTGGGCAGGACGGGGAGTGGAAAATCTACCTTGATCCAAGCTCTTTTTAGAGTAGTAGAGCCCTCTGGTGGACATATATTAATAGATGGTGTTGATATTTCTAAAATAGGTCTGCAAGACTTGAGATCAAGGTTGGGAATAATTCCACAAGACCCAACATTATTTCAAGGAACCATGAGGACTAATCTGGATCCTCTGCAACAGCATTCAGATCAAGAAATCTGGGAGGTTCTCAATCAGTGTCGACTTGCAGAGATAGTTAGGCAAGACCAAAGGCTTCTTGATGCACCTGTTGCTGAAGATGGAGAAAATTGGAGTGTGGGACAGAGGCAGCTTGTGTGCCTGGCACGAGTACTCCTAAAGAAAAGGAGGATTCTGGTGTTGGATGAGGCTACAGCTTCTATTGATACCGCCACAGATGTTGTAATTCAGGAGACTATAAGGAGAGAAACAAGTGGATGCACTGTCATTACTGTGGCTCATCGAATTCCTACTGTTATTGACAATGACTTGGTTCTAGTCCTTGATGAAGGAAAGGTTTTAGAGTATGACTCTCCAGCTCGGTTACTTGAGGATAGTTCTTCTGCATTCTCCAAGTTGGTGGCAGAATACTCGAGGAGATCTTCCATGAGCAACTGCTTTAGAGACCTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox

Protein Analysis

1448

Amino Acids

162.59

Weight (kDa)

8.56

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 271 - 536 1.2e-23 ABC transporter transmembrane region
ABC_tran PF00005 610 - 738 2.3e-15 ABC transporter
ABC_membrane PF00664 901 - 1125 8.4e-29 ABC transporter transmembrane region
ABC_tran PF00005 1215 - 1363 8.9e-29 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2075
AccB1I GGYRCC 1 cut(s) 3535
AccB7I CCANNNNNTGG 2 cut(s) 661, 1085
AccI GTMKAC 5 cut(s) 1897, 2488, 2961, 3559, 3934
AccII CGCG 1 cut(s) 1017
AccIII TCCGGA 2 cut(s) 738, 2554
AciI CCGC 4 cut(s) 222, 1857, 3229, 4101
AcoI YGGCCR 2 cut(s) 1278, 3575
AcuI CTGAAG 6 cut(s) 678, 699, 1400, 1466, 2859, 4008
AfaI GTAC 5 cut(s) 97, 1014, 1020, 1145, 4044
AflIII ACRYGT 1 cut(s) 1015
AhlI ACTAGT 1 cut(s) 3541
AjiI CACGTC 1 cut(s) 54
AjnI CCWGG 6 cut(s) 1708, 2070, 2679, 3444, 3667, 4032
AjuI GAANNNNNNNTTGG 2 cut(s) 2298, 2330
Alw21I GWGCWC 6 cut(s) 324, 1000, 1629, 2644, 2792, 2890
AlwNI CAGNNNCTG 4 cut(s) 1565, 2585, 2686, 3197
Ama87I CYCGRG 3 cut(s) 551, 3071, 4303
Aor13HI TCCGGA 2 cut(s) 738, 2554
AoxI GGCC 6 cut(s) 332, 786, 1185, 1278, 2531, 3575
ArsI GACNNNNNNTTYG 4 cut(s) 43, 75, 256, 288
AseI ATTAAT 2 cut(s) 1098, 3770
Asp700I GAANNNNTTC 3 cut(s) 560, 1296, 3606
AspLEI GCGC 1 cut(s) 1217
AspS9I GGNCC 8 cut(s) 340, 786, 854, 1076, 2068, 2531, 2588, 3313
AsuHPI GGTGA 4 cut(s) 397, 1488, 2417, 3466
AsuII TTCGAA 2 cut(s) 564, 3151
AvaI CYCGRG 3 cut(s) 551, 3071, 4303
AvaII GGWCC 6 cut(s) 340, 854, 1076, 2068, 2588, 3313
BaeI ACNNNNGTAYC 2 cut(s) 1638, 1671
BalI TGGCCA 2 cut(s) 1280, 3577
BamHI GGATCC 2 cut(s) 3504, 3880
BanI GGYRCC 1 cut(s) 3535
BanII GRGCYC 4 cut(s) 1608, 1629, 2792, 3753
BarI GAAGNNNNNNTAC 2 cut(s) 79, 111
BauI CACGAG 2 cut(s) 3270, 4038
BbsI GAAGAC 3 cut(s) 962, 1171, 2931
Bbv12I GWGCWC 6 cut(s) 324, 1000, 1629, 2644, 2792, 2890
BbvCI CCTCAGC 1 cut(s) 1421
BceAI ACGGC 1 cut(s) 773
BcgI CGANNNNNNTGC 2 cut(s) 4284, 4318
BciT130I CCWGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
BciVI GTATCC 1 cut(s) 1832
BclI TGATCA 2 cut(s) 1104, 1780
BcuI ACTAGT 1 cut(s) 3541
BfaI CTAG 7 cut(s) 65, 2318, 2919, 3123, 3396, 3542, 4208
BfmI CTRYAG 4 cut(s) 2106, 2176, 2958, 4083
BfoI RGCGCY 1 cut(s) 1218
BfuI GTATCC 1 cut(s) 1832
BglII AGATCT 2 cut(s) 6, 4310
BmcAI AGTACT 1 cut(s) 4044
Bme1390I CCNGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
Bme18I GGWCC 6 cut(s) 340, 854, 1076, 2068, 2588, 3313
BmeT110I CYCGRG 3 cut(s) 551, 3071, 4303
BmgBI CACGTC 1 cut(s) 54
BmgT120I GGNCC 8 cut(s) 340, 786, 854, 1076, 2068, 2531, 2588, 3313
BmiI GGNNCC 7 cut(s) 341, 855, 3159, 3506, 3537, 3862, 3882
BmrFI CCNGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
BmrI ACTGGG 1 cut(s) 2645
BmsI GCATC 6 cut(s) 580, 851, 2215, 3030, 3964, 4139
BmuI ACTGGG 1 cut(s) 2645
BpiI GAAGAC 3 cut(s) 962, 1171, 2931
BplI GAGNNNNNCTC 6 cut(s) 1014, 1046, 2476, 2508, 4226, 4258
BpmI CTGGAG 3 cut(s) 2802, 3428, 4230
Bpu10I CCTNAGC 1 cut(s) 1421
Bpu14I TTCGAA 2 cut(s) 564, 3151
BpuEI CTTGAG 3 cut(s) 3024, 3832, 4280
BsaI GGTCTC 1 cut(s) 4329
BsaJI CCNNGG 7 cut(s) 335, 1188, 2680, 2943, 3070, 3377, 3667
BsaWI WCCGGW 2 cut(s) 738, 2554
BsaXI ACNNNNNCTCC 6 cut(s) 1923, 1953, 1991, 2021, 4029, 4059
Bse1I ACTGG 8 cut(s) 894, 1990, 2166, 2590, 2591, 2651, 2711, 3414
Bse3DI GCAATG 4 cut(s) 508, 764, 948, 1090
BseAI TCCGGA 2 cut(s) 738, 2554
BseBI CCWGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
BseDI CCNNGG 7 cut(s) 335, 1188, 2680, 2943, 3070, 3377, 3667
BseMI GCAATG 4 cut(s) 508, 764, 948, 1090
BseNI ACTGG 8 cut(s) 894, 1990, 2166, 2590, 2591, 2651, 2711, 3414
BseRI GAGGAG 2 cut(s) 1450, 4321
BseYI CCCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 2412
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 6 cut(s) 334, 788, 1187, 1280, 2533, 3577
BshNI GGYRCC 1 cut(s) 3535
BsiHKAI GWGCWC 6 cut(s) 324, 1000, 1629, 2644, 2792, 2890
BsiHKCI CYCGRG 3 cut(s) 551, 3071, 4303
BsiSI CCGG 2 cut(s) 739, 2555
BsiWI CGTACG 1 cut(s) 1018
BslFI GGGAC 6 cut(s) 671, 867, 1960, 2154, 2633, 4026
BsmFI GGGAC 6 cut(s) 671, 867, 1960, 2154, 2633, 4026
BsmI GAATGC 4 cut(s) 912, 1381, 3895, 4277
BsnI GGCC 6 cut(s) 334, 788, 1187, 1280, 2533, 3577
Bso31I GGTCTC 1 cut(s) 4329
BsoBI CYCGRG 3 cut(s) 551, 3071, 4303
Bsp119I TTCGAA 2 cut(s) 564, 3151
Bsp1286I GDGCHC 8 cut(s) 324, 1000, 1608, 1629, 2644, 2792, 2890, 3753
Bsp13I TCCGGA 2 cut(s) 738, 2554
BspACI CCGC 4 cut(s) 222, 1857, 3229, 4101
BspANI GGCC 6 cut(s) 334, 788, 1187, 1280, 2533, 3577
BspEI TCCGGA 2 cut(s) 738, 2554
BspFNI CGCG 1 cut(s) 1017
BspHI TCATGA 1 cut(s) 1737
BspLI GGNNCC 7 cut(s) 341, 855, 3159, 3506, 3537, 3862, 3882
BspQI GCTCTTC 1 cut(s) 3636
BspT104I TTCGAA 2 cut(s) 564, 3151
BspT107I GGYRCC 1 cut(s) 3535
BspTNI GGTCTC 1 cut(s) 4329
BsrDI GCAATG 4 cut(s) 508, 764, 948, 1090
BsrI ACTGG 8 cut(s) 894, 1990, 2166, 2590, 2591, 2651, 2711, 3414
BssECI CCNNGG 7 cut(s) 335, 1188, 2680, 2943, 3070, 3377, 3667
BssNAI GTATAC 1 cut(s) 1898
BssSI CACGAG 2 cut(s) 3270, 4038
BssT1I CCWWGG 3 cut(s) 335, 1188, 3377
Bst1107I GTATAC 1 cut(s) 1898
Bst2BI CACGAG 2 cut(s) 3270, 4038
Bst2UI CCWGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
Bst6I CTCTTC 8 cut(s) 82, 1176, 1442, 1490, 2517, 2681, 2861, 3636
BstAPI GCANNNNNTGC 4 cut(s) 710, 821, 2831, 3983
BstBI TTCGAA 2 cut(s) 564, 3151
BstC8I GCNNGC 4 cut(s) 130, 1364, 2549, 3374
BstDSI CCRYGG 1 cut(s) 2943
BstENI CCTNNNNNAGG 1 cut(s) 2678
BstFNI CGCG 1 cut(s) 1017
BstH2I RGCGCY 1 cut(s) 1218
BstHHI GCGC 1 cut(s) 1217
BstNI CCWGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
BstNSI RCATGY 3 cut(s) 1288, 1366, 1467
BstSCI CCNGG 6 cut(s) 1708, 2070, 2679, 3444, 3667, 4032
BstSFI CTRYAG 4 cut(s) 2106, 2176, 2958, 4083
BstUI CGCG 1 cut(s) 1017
BstV2I GAAGAC 3 cut(s) 962, 1171, 2931
BstX2I RGATCY 5 cut(s) 6, 357, 3504, 3880, 4310
BstXI CCANNNNNNTGG 3 cut(s) 1252, 1312, 4291
BstYI RGATCY 5 cut(s) 6, 357, 3504, 3880, 4310
BstZ17I GTATAC 1 cut(s) 1898
BsuI GTATCC 1 cut(s) 1832
BsuRI GGCC 6 cut(s) 334, 788, 1187, 1280, 2533, 3577
BtgI CCRYGG 1 cut(s) 2943
BtrI CACGTC 1 cut(s) 54
BtsI GCAGTG 1 cut(s) 989
Cac8I GCNNGC 4 cut(s) 130, 1364, 2549, 3374
CaiI CAGNNNCTG 4 cut(s) 1565, 2585, 2686, 3197
CciI TCATGA 1 cut(s) 1737
CfoI GCGC 1 cut(s) 1217
Cfr13I GGNCC 8 cut(s) 340, 786, 854, 1076, 2068, 2531, 2588, 3313
CpoI CGGWCCG 1 cut(s) 3313
Csp6I GTAC 5 cut(s) 96, 1013, 1019, 1144, 4043
CspCI CAANNNNNGTGG 4 cut(s) 965, 1000, 4093, 4128
CspI CGGWCCG 1 cut(s) 3313
CviQI GTAC 5 cut(s) 96, 1013, 1019, 1144, 4043
DrdI GACNNNNNNGTC 1 cut(s) 2075
DseDI GACNNNNNNGTC 1 cut(s) 2075
EaeI YGGCCR 2 cut(s) 1278, 3575
Eam1104I CTCTTC 8 cut(s) 82, 1176, 1442, 1490, 2517, 2681, 2861, 3636
EarI CTCTTC 8 cut(s) 82, 1176, 1442, 1490, 2517, 2681, 2861, 3636
Ecl136II GAGCTC 2 cut(s) 1627, 2790
Eco130I CCWWGG 3 cut(s) 335, 1188, 3377
Eco24I GRGCYC 4 cut(s) 1608, 1629, 2792, 3753
Eco31I GGTCTC 1 cut(s) 4329
Eco32I GATATC 1 cut(s) 3492
Eco47I GGWCC 6 cut(s) 340, 854, 1076, 2068, 2588, 3313
Eco53kI GAGCTC 2 cut(s) 1627, 2790
Eco57I CTGAAG 6 cut(s) 678, 699, 1400, 1466, 2859, 4008
Eco88I CYCGRG 3 cut(s) 551, 3071, 4303
EcoICRI GAGCTC 2 cut(s) 1627, 2790
EcoNI CCTNNNNNAGG 1 cut(s) 2678
EcoO109I RGGNCCY 2 cut(s) 340, 2531
EcoRI GAATTC 4 cut(s) 1593, 1676, 3147, 4176
EcoRII CCWGG 6 cut(s) 1708, 2070, 2679, 3444, 3667, 4032
EcoRV GATATC 1 cut(s) 3492
EcoT14I CCWWGG 3 cut(s) 335, 1188, 3377
EcoT22I ATGCAT 2 cut(s) 1535, 1768
EcoT38I GRGCYC 4 cut(s) 1608, 1629, 2792, 3753
ErhI CCWWGG 3 cut(s) 335, 1188, 3377
FalI AAGNNNNNCTT 8 cut(s) 319, 351, 1281, 1313, 1868, 1900, 3045, 3077
FaqI GGGAC 6 cut(s) 671, 867, 1960, 2154, 2633, 4026
FauNDI CATATG 2 cut(s) 2459, 3092
FbaI TGATCA 2 cut(s) 1104, 1780
FblI GTMKAC 5 cut(s) 1897, 2488, 2961, 3559, 3934
FriOI GRGCYC 4 cut(s) 1608, 1629, 2792, 3753
FspBI CTAG 7 cut(s) 65, 2318, 2919, 3123, 3396, 3542, 4208
GlaI GCGC 1 cut(s) 1216
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 3 cut(s) 2802, 3428, 4230
HaeII RGCGCY 1 cut(s) 1218
HaeIII GGCC 6 cut(s) 334, 788, 1187, 1280, 2533, 3577
HapII CCGG 2 cut(s) 739, 2555
HhaI GCGC 1 cut(s) 1217
Hin6I GCGC 1 cut(s) 1215
HinP1I GCGC 1 cut(s) 1215
HincII GTYRAC 2 cut(s) 2455, 3935
HindII GTYRAC 2 cut(s) 2455, 3935
HindIII AAGCTT 2 cut(s) 1882, 1953
HpaI GTTAAC 1 cut(s) 2455
HpaII CCGG 2 cut(s) 739, 2555
HphI GGTGA 4 cut(s) 397, 1488, 2417, 3466
HpyCH4IV ACGT 3 cut(s) 53, 195, 1734
HpySE526I ACGT 3 cut(s) 53, 195, 1734
HspAI GCGC 1 cut(s) 1215
Kpn2I TCCGGA 2 cut(s) 738, 2554
Ksp22I TGATCA 2 cut(s) 1104, 1780
KspAI GTTAAC 1 cut(s) 2455
LguI GCTCTTC 1 cut(s) 3636
LmnI GCTCC 5 cut(s) 603, 1931, 2787, 2795, 3163
LweI GCATC 6 cut(s) 580, 851, 2215, 3030, 3964, 4139
MaeI CTAG 7 cut(s) 65, 2318, 2919, 3123, 3396, 3542, 4208
MaeII ACGT 3 cut(s) 53, 195, 1734
MaeIII GTNAC 8 cut(s) 286, 489, 581, 610, 1339, 2564, 2620, 4254
MfeI CAATTG 1 cut(s) 1694
MflI RGATCY 5 cut(s) 6, 357, 3504, 3880, 4310
MhlI GDGCHC 8 cut(s) 324, 1000, 1608, 1629, 2644, 2792, 2890, 3753
MlsI TGGCCA 2 cut(s) 1280, 3577
MluI ACGCGT 1 cut(s) 1015
MluNI TGGCCA 2 cut(s) 1280, 3577
MlyI GAGTC 7 cut(s) 982, 1345, 2572, 2860, 2900, 3078, 4235
MmeI TCCRAC 5 cut(s) 1755, 3034, 3124, 3565, 4053
Mox20I TGGCCA 2 cut(s) 1280, 3577
Mph1103I ATGCAT 2 cut(s) 1535, 1768
MroI TCCGGA 2 cut(s) 738, 2554
MroXI GAANNNNTTC 3 cut(s) 560, 1296, 3606
MscI TGGCCA 2 cut(s) 1280, 3577
MslI CAYNNNNRTG 5 cut(s) 619, 1634, 3288, 3365, 4163
Msp20I TGGCCA 2 cut(s) 1280, 3577
MspA1I CMGCKG 1 cut(s) 1420
MspI CCGG 2 cut(s) 739, 2555
MspR9I CCNGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
MunI CAATTG 1 cut(s) 1694
Mva1269I GAATGC 4 cut(s) 912, 1381, 3895, 4277
MvaI CCWGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
MvnI CGCG 1 cut(s) 1017
NdeI CATATG 2 cut(s) 2459, 3092
NlaIV GGNNCC 7 cut(s) 341, 855, 3159, 3506, 3537, 3862, 3882
NmeAIII GCCGAG 1 cut(s) 1191
NmuCI GTSAC 3 cut(s) 286, 610, 2564
NsiI ATGCAT 2 cut(s) 1535, 1768
NspI RCATGY 3 cut(s) 1288, 1366, 1467
NspV TTCGAA 2 cut(s) 564, 3151
PaeI GCATGC 1 cut(s) 1366
PaeR7I CTCGAG 2 cut(s) 551, 4303
PagI TCATGA 1 cut(s) 1737
PciSI GCTCTTC 1 cut(s) 3636
PctI GAATGC 4 cut(s) 912, 1381, 3895, 4277
PdmI GAANNNNTTC 3 cut(s) 560, 1296, 3606
Pfl23II CGTACG 1 cut(s) 1018
PflFI GACNNNGTC 1 cut(s) 2333
PflMI CCANNNNNTGG 2 cut(s) 661, 1085
PleI GAGTC 7 cut(s) 981, 1345, 2571, 2859, 2900, 3078, 4235
PpsI GAGTC 7 cut(s) 981, 1345, 2571, 2859, 2900, 3078, 4235
PpuMI RGGWCCY 1 cut(s) 340
PshBI ATTAAT 2 cut(s) 1098, 3770
Psp124BI GAGCTC 2 cut(s) 1629, 2792
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 6 cut(s) 1708, 2070, 2679, 3444, 3667, 4032
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 6 cut(s) 1708, 2070, 2679, 3444, 3667, 4032
PspLI CGTACG 1 cut(s) 1018
PspN4I GGNNCC 7 cut(s) 341, 855, 3159, 3506, 3537, 3862, 3882
PspPI GGNCC 8 cut(s) 340, 786, 854, 1076, 2068, 2531, 2588, 3313
PspPPI RGGWCCY 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 4303
PstNI CAGNNNCTG 4 cut(s) 1565, 2585, 2686, 3197
PsuI RGATCY 5 cut(s) 6, 357, 3504, 3880, 4310
PsyI GACNNNGTC 1 cut(s) 2333
PvuII CAGCTG 1 cut(s) 1420
RsaI GTAC 5 cut(s) 97, 1014, 1020, 1145, 4044
RsaNI GTAC 5 cut(s) 96, 1013, 1019, 1144, 4043
RseI CAYNNNNRTG 5 cut(s) 619, 1634, 3288, 3365, 4163
Rsr2I CGGWCCG 1 cut(s) 3313
RsrII CGGWCCG 1 cut(s) 3313
SacI GAGCTC 2 cut(s) 1629, 2792
SalI GTCGAC 1 cut(s) 3933
SapI GCTCTTC 1 cut(s) 3636
Sau96I GGNCC 8 cut(s) 340, 786, 854, 1076, 2068, 2531, 2588, 3313
ScaI AGTACT 1 cut(s) 4044
SchI GAGTC 7 cut(s) 982, 1345, 2572, 2860, 2900, 3078, 4235
ScrFI CCNGG 6 cut(s) 1710, 2072, 2681, 3446, 3669, 4034
SduI GDGCHC 8 cut(s) 324, 1000, 1608, 1629, 2644, 2792, 2890, 3753
SfaNI GCATC 6 cut(s) 580, 851, 2215, 3030, 3964, 4139
SfcI CTRYAG 4 cut(s) 2106, 2176, 2958, 4083
Sfr274I CTCGAG 2 cut(s) 551, 4303
SfuI TTCGAA 2 cut(s) 564, 3151
SinI GGWCC 6 cut(s) 340, 854, 1076, 2068, 2588, 3313
SlaI CTCGAG 2 cut(s) 551, 4303
SmiMI CAYNNNNRTG 5 cut(s) 619, 1634, 3288, 3365, 4163
SmlI CTYRAG 5 cut(s) 551, 3039, 3811, 4259, 4303
SmoI CTYRAG 5 cut(s) 551, 3039, 3811, 4259, 4303
SpeI ACTAGT 1 cut(s) 3541
SphI GCATGC 1 cut(s) 1366
SsiI CCGC 4 cut(s) 222, 1857, 3229, 4101
SspI AATATT 1 cut(s) 3523
SspMI CTAG 7 cut(s) 65, 2318, 2919, 3123, 3396, 3542, 4208
SstI GAGCTC 2 cut(s) 1629, 2792
StyD4I CCNGG 6 cut(s) 1708, 2070, 2679, 3444, 3667, 4032
StyI CCWWGG 3 cut(s) 335, 1188, 3377
TaiI ACGT 3 cut(s) 56, 198, 1737
TaqII GACCGA 1 cut(s) 3301
TatI WGTACW 1 cut(s) 4042
TseFI GTSAC 3 cut(s) 286, 610, 2564
Tsp45I GTSAC 3 cut(s) 286, 610, 2564
TspGWI ACGGA 1 cut(s) 2960
Tth111I GACNNNGTC 1 cut(s) 2333
Van91I CCANNNNNTGG 2 cut(s) 661, 1085
VpaK11BI GGWCC 6 cut(s) 340, 854, 1076, 2068, 2588, 3313
VspI ATTAAT 2 cut(s) 1098, 3770
XagI CCTNNNNNAGG 1 cut(s) 2678
XbaI TCTAGA 1 cut(s) 2317
XceI RCATGY 3 cut(s) 1288, 1366, 1467
XcmI CCANNNNNNNNNTGG 3 cut(s) 1971, 2800, 3570
XhoI CTCGAG 2 cut(s) 551, 4303
XmiI GTMKAC 5 cut(s) 1897, 2488, 2961, 3559, 3934
XmnI GAANNNNTTC 3 cut(s) 560, 1296, 3606
XspI CTAG 7 cut(s) 65, 2318, 2919, 3123, 3396, 3542, 4208
ZrmI AGTACT 1 cut(s) 4044
Zsp2I ATGCAT 2 cut(s) 1535, 1768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.