FvH4_5g02150

Wuschel-related homeobox

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
1338180 .. 1340238
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02150.t1

Sequence Viewer

Length: 1068 bp
ATGTTTTTGATGATGAAATCCATCAGCGCTAGTTGTAGAAACCCTAACATGAACATTACCAGGGATCAGCTGCCTGACTACTATATCAAAGCTGCTGCAAATCTTCATCAGCCTGCAGTACTACTCACTCCAAAGCTTACCTCTACTTCCAGTACGACCCAAAACCCTGTGTTACCACTCAACTACCATCAACATCAGATGGTTCGAGGGACATCGACGTCGACTGCGCAAGGGAGAAGTAGCAGTAGTGGTAGTTTTTGTATTGATAAAAAATCCGAAGCTGCAGCTCCTTTGCGAAGGTCCCGATGGACTCCAACCCCGGAGCAGGTTATGGCCCTGAAAGAGATGTATCGATGTGGGTTAAAGACACCAACGGCCAAACAGATCCAACTGGTGACTGTGCAGCTTCGAAACTATGGGAGAATTGAAGGCAAGAATGTATTTTATTGGTTTCAGAACTACCGAGCCAGGGAGAGGCAGAAGAGACGACGTCAAGTAATGTCCATGTATAAGTCGACTGACTCTAAACAACAGCAAACTTTCACTAACAACACGACTAGCGGTCTCCAGGACAAAGAATCTGCAGGAGGACTAACTAATCAGTCAAGTCTTGAAGTTGAGCAGCAGATCAGTCTTGAAGTTGAGCAGCAGAATAAGTGGAAACTACCGAACCGCACTGTTATTTCTGATCAGGAATCATCTTCAGTACTGCAAGAGAGGATGATGAGCATGGTGGATTGCTCCTCGAGGCAACTTGTGGAACAAATGGCTACACGTAGATCGACCTCAGACGCTACGTTAATTCACAGAAAGCTCTTGGACTATCGTCACTGTTATCATCATGATTACGGCCGTATGGTATTAACTGAACCCACTAATTACAGAAGAGAAGAAGAAAGTAGAGAAACTCAAACTCTGGAGCTCTTTCCACTCAAGAGCGACAATCTTAGGGGAGCTAAGGATACCAAAGTACCTCTAAGCAGAACCACAAGCACAGACAATACTGCAGATCTCATTGCAGACGATATTATTAGTTTCTTTGAAAGATTTAAGGCAGCATATAACTAG

Protein Analysis

356

Amino Acids

40.83

Weight (kDa)

9.57

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 99 - 160 6.8e-13 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AatII GACGTC 2 cut(s) 221, 493
AbsI CCTCGAGG 1 cut(s) 745
Acc16I TGCGCA 1 cut(s) 228
Acc36I ACCTGC 1 cut(s) 316
AccI GTMKAC 2 cut(s) 221, 515
AciI CCGC 2 cut(s) 561, 673
AclWI GGATC 2 cut(s) 72, 379
AcoI YGGCCR 2 cut(s) 375, 850
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 2 cut(s) 218, 490
AfaI GTAC 4 cut(s) 120, 154, 708, 972
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 3 cut(s) 325, 469, 474
AflIII ACRYGT 1 cut(s) 773
AgsI TTSAA 4 cut(s) 428, 614, 638, 1043
AhdI GACNNNNNGTC 1 cut(s) 561
AjnI CCWGG 3 cut(s) 59, 467, 567
AluBI AGCT 9 cut(s) 70, 92, 136, 281, 287, 406, 814, 922, 956
AluI AGCT 9 cut(s) 70, 92, 136, 281, 287, 406, 814, 922, 956
Alw21I GWGCWC 1 cut(s) 924
Alw26I GTCTC 2 cut(s) 478, 569
AlwI GGATC 2 cut(s) 72, 379
Ama87I CYCGRG 1 cut(s) 745
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 3 cut(s) 333, 375, 850
ApeKI GCWGC 9 cut(s) 70, 92, 95, 281, 284, 403, 622, 646, 1055
AspLEI GCGC 2 cut(s) 29, 229
AspS9I GGNCC 2 cut(s) 300, 334
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 406
AsuII TTCGAA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 745
AvaII GGWCC 1 cut(s) 300
BaeI ACNNNNGTAYC 4 cut(s) 954, 954, 987, 987
BanII GRGCYC 1 cut(s) 924
Bbv12I GWGCWC 1 cut(s) 924
BbvI GCAGC 8 cut(s) 57, 79, 82, 268, 296, 415, 634, 658
BccI CCATC 4 cut(s) 29, 193, 195, 300
BceAI ACGGC 3 cut(s) 390, 837, 865
BciT130I CCWGG 3 cut(s) 61, 469, 569
BciVI GTATCC 1 cut(s) 955
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 478, 569
BfaI CTAG 3 cut(s) 30, 558, 1066
BfmI CTRYAG 4 cut(s) 114, 282, 582, 1005
BfoI RGCGCY 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 955
BglII AGATCT 1 cut(s) 1009
BisI GCNGC 9 cut(s) 71, 93, 96, 282, 285, 404, 623, 647, 1056
BlsI GCNGC 9 cut(s) 72, 94, 97, 283, 286, 405, 624, 648, 1057
BmcAI AGTACT 2 cut(s) 120, 708
Bme1390I CCNGG 4 cut(s) 61, 320, 469, 569
Bme18I GGWCC 1 cut(s) 300
BmeRI GACNNNNNGTC 1 cut(s) 561
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 2 cut(s) 300, 334
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 4 cut(s) 61, 320, 469, 569
BoxI GACNNNNGTC 1 cut(s) 825
BpmI CTGGAG 2 cut(s) 551, 938
Bpu10I CCTNAGC 1 cut(s) 957
Bpu14I TTCGAA 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 917
BpuMI CCSGG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 776
BsaHI GRCGYC 2 cut(s) 218, 490
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 3 cut(s) 60, 318, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 469, 474
Bse1I ACTGG 2 cut(s) 150, 396
Bse3DI GCAATG 1 cut(s) 1014
BseBI CCWGG 3 cut(s) 61, 469, 569
BseCI ATCGAT 1 cut(s) 352
BseDI CCNNGG 3 cut(s) 60, 318, 468
BseGI GGATG 1 cut(s) 726
BseLI CCNNNNNNNGG 3 cut(s) 325, 469, 474
BseMI GCAATG 1 cut(s) 1014
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 2 cut(s) 150, 396
BseRI GAGGAG 1 cut(s) 733
BseX3I CGGCCG 1 cut(s) 850
BseXI GCAGC 8 cut(s) 57, 79, 82, 268, 296, 415, 634, 658
BsgI GTGCAG 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 853
BshFI GGCC 3 cut(s) 335, 377, 852
BshVI ATCGAT 1 cut(s) 352
BsiEI CGRYCG 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 924
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 2 cut(s) 223, 286
BslI CCNNNNNNNGG 3 cut(s) 325, 469, 474
BsmAI GTCTC 2 cut(s) 478, 569
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 2 cut(s) 223, 286
BsnI GGCC 3 cut(s) 335, 377, 852
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 1 cut(s) 745
Bsp119I TTCGAA 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 924
Bsp143I GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
BspACI CCGC 2 cut(s) 561, 673
BspANI GGCC 3 cut(s) 335, 377, 852
BspCNI CTCAG 1 cut(s) 800
BspDI ATCGAT 1 cut(s) 352
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 1 cut(s) 302
BspMAI CTGCAG 4 cut(s) 118, 286, 586, 1009
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 2 cut(s) 72, 379
BspT104I TTCGAA 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 1014
BsrI ACTGG 2 cut(s) 150, 396
BssECI CCNNGG 3 cut(s) 60, 318, 468
BssMI GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
BssNI GRCGYC 2 cut(s) 218, 490
Bst2UI CCWGG 3 cut(s) 61, 469, 569
Bst4CI ACNGT 3 cut(s) 400, 679, 833
Bst6I CTCTTC 2 cut(s) 476, 880
BstACI GRCGYC 2 cut(s) 218, 490
BstBAI YACGTR 1 cut(s) 776
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 4 cut(s) 787, 947, 957, 977
BstF5I GGATG 1 cut(s) 726
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 229
BstKTI GATC 6 cut(s) 67, 387, 630, 691, 782, 1012
BstMAI GTCTC 2 cut(s) 478, 569
BstMBI GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
BstMCI CGRYCG 1 cut(s) 853
BstNI CCWGG 3 cut(s) 61, 469, 569
BstPAI GACNNNNGTC 1 cut(s) 825
BstSCI CCNGG 4 cut(s) 59, 318, 467, 567
BstSFI CTRYAG 4 cut(s) 114, 282, 582, 1005
BstV1I GCAGC 8 cut(s) 57, 79, 82, 268, 296, 415, 634, 658
BstX2I RGATCY 2 cut(s) 384, 1009
BstYI RGATCY 2 cut(s) 384, 1009
BstZI CGGCCG 1 cut(s) 850
Bsu15I ATCGAT 1 cut(s) 352
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 3 cut(s) 335, 377, 852
BsuTUI ATCGAT 1 cut(s) 352
BtsCI GGATG 1 cut(s) 726
BtsIMutI CAGTG 2 cut(s) 675, 829
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 841
CfoI GCGC 2 cut(s) 29, 229
Cfr13I GGNCC 2 cut(s) 300, 334
ClaI ATCGAT 1 cut(s) 352
CseI GACGC 1 cut(s) 800
Csp6I GTAC 4 cut(s) 119, 153, 707, 971
CviAII CATG 4 cut(s) 49, 505, 730, 842
CviQI GTAC 4 cut(s) 119, 153, 707, 971
DdeI CTNAG 4 cut(s) 787, 947, 957, 977
DpnI GATC 6 cut(s) 66, 386, 629, 690, 781, 1011
DpnII GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
DrdI GACNNNNNNGTC 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 561
DseDI GACNNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 375, 850
EagI CGGCCG 1 cut(s) 850
Eam1104I CTCTTC 2 cut(s) 476, 880
Eam1105I GACNNNNNGTC 1 cut(s) 561
EarI CTCTTC 2 cut(s) 476, 880
Ecl136II GAGCTC 1 cut(s) 922
EclXI CGGCCG 1 cut(s) 850
Eco24I GRGCYC 1 cut(s) 924
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 300
Eco47III AGCGCT 1 cut(s) 28
Eco52I CGGCCG 1 cut(s) 850
Eco53kI GAGCTC 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 745
EcoICRI GAGCTC 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 3 cut(s) 59, 467, 567
EcoT38I GRGCYC 1 cut(s) 924
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 4 cut(s) 52, 508, 733, 845
FaqI GGGAC 2 cut(s) 223, 286
FatI CATG 4 cut(s) 48, 504, 729, 841
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 2 cut(s) 221, 515
Fnu4HI GCNGC 9 cut(s) 71, 93, 96, 282, 285, 404, 623, 647, 1056
FokI GGATG 1 cut(s) 733
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 9 cut(s) 71, 93, 96, 282, 285, 404, 623, 647, 1056
FspBI CTAG 3 cut(s) 30, 558, 1066
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 2 cut(s) 28, 228
GluI GCNGC 9 cut(s) 71, 93, 96, 282, 285, 404, 623, 647, 1056
GsuI CTGGAG 2 cut(s) 551, 938
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 335, 377, 852
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 800
HhaI GCGC 2 cut(s) 29, 229
Hin1I GRCGYC 2 cut(s) 218, 490
Hin1II CATG 4 cut(s) 52, 508, 733, 845
Hin6I GCGC 2 cut(s) 27, 227
HinP1I GCGC 2 cut(s) 27, 227
HincII GTYRAC 2 cut(s) 222, 516
HindII GTYRAC 2 cut(s) 222, 516
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 4 cut(s) 310, 521, 578, 695
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 222, 516
Hpy188I TCNGA 5 cut(s) 198, 277, 456, 688, 790
Hpy188III TCNNGA 7 cut(s) 303, 611, 635, 692, 842, 917, 934
Hpy8I GTNNAC 2 cut(s) 222, 516
Hpy99I CGWCG 3 cut(s) 220, 223, 492
HpyAV CCTTC 2 cut(s) 291, 422
HpyCH4III ACNGT 3 cut(s) 400, 679, 833
HpyCH4IV ACGT 4 cut(s) 218, 490, 775, 797
HpyCH4V TGCA 8 cut(s) 98, 116, 284, 403, 584, 712, 1007, 1019
HpyF3I CTNAG 4 cut(s) 787, 947, 957, 977
HpySE526I ACGT 4 cut(s) 218, 490, 775, 797
Hsp92I GRCGYC 2 cut(s) 218, 490
Hsp92II CATG 4 cut(s) 52, 508, 733, 845
HspAI GCGC 2 cut(s) 27, 227
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
LmnI GCTCC 5 cut(s) 292, 322, 746, 919, 953
Lsp1109I GCAGC 8 cut(s) 57, 79, 82, 268, 296, 415, 634, 658
MaeI CTAG 3 cut(s) 30, 558, 1066
MaeII ACGT 4 cut(s) 218, 490, 775, 797
MaeIII GTNAC 3 cut(s) 171, 394, 827
MalI GATC 6 cut(s) 66, 386, 629, 690, 781, 1011
MboI GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
MboII GAAGA 6 cut(s) 95, 493, 693, 897, 902, 905
MflI RGATCY 2 cut(s) 384, 1009
MhlI GDGCHC 1 cut(s) 924
MluCI AATT 3 cut(s) 423, 801, 877
MlyI GAGTC 2 cut(s) 304, 515
MmeI TCCRAC 2 cut(s) 338, 412
MnlI CCTC 9 cut(s) 151, 200, 468, 581, 711, 741, 754, 796, 984
MseI TTAA 4 cut(s) 362, 800, 863, 1050
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 4 cut(s) 61, 320, 469, 569
MvaI CCWGG 3 cut(s) 61, 469, 569
NciI CCSGG 1 cut(s) 320
NdeII GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
NlaIII CATG 4 cut(s) 52, 508, 733, 845
NlaIV GGNNCC 1 cut(s) 302
NmuCI GTSAC 2 cut(s) 394, 827
NsbI TGCGCA 1 cut(s) 228
NspV TTCGAA 1 cut(s) 409
PaeR7I CTCGAG 1 cut(s) 745
PagI TCATGA 1 cut(s) 841
PfeI GAWTC 2 cut(s) 578, 695
PflFI GACNNNGTC 1 cut(s) 489
PfoI TCCNGGA 1 cut(s) 567
PkrI GCNGC 9 cut(s) 72, 94, 97, 283, 286, 405, 624, 648, 1057
PleI GAGTC 2 cut(s) 304, 515
PpsI GAGTC 2 cut(s) 304, 515
Ppu21I YACGTR 1 cut(s) 776
PpuMI RGGWCCY 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 825
Psp124BI GAGCTC 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 3 cut(s) 59, 467, 567
PspGI CCWGG 3 cut(s) 59, 467, 567
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 2 cut(s) 300, 334
PspPPI RGGWCCY 1 cut(s) 300
PspXI VCTCGAGB 1 cut(s) 745
PstI CTGCAG 4 cut(s) 118, 286, 586, 1009
PsuI RGATCY 2 cut(s) 384, 1009
PsyI GACNNNGTC 1 cut(s) 489
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 4 cut(s) 120, 154, 708, 972
RsaNI GTAC 4 cut(s) 119, 153, 707, 971
SacI GAGCTC 1 cut(s) 924
SalI GTCGAC 2 cut(s) 220, 514
SaqAI TTAA 4 cut(s) 362, 800, 863, 1050
SatI GCNGC 9 cut(s) 71, 93, 96, 282, 285, 404, 623, 647, 1056
Sau3AI GATC 6 cut(s) 64, 384, 627, 688, 779, 1009
Sau96I GGNCC 2 cut(s) 300, 334
ScaI AGTACT 2 cut(s) 120, 708
SchI GAGTC 2 cut(s) 304, 515
ScrFI CCNGG 4 cut(s) 61, 320, 469, 569
SduI GDGCHC 1 cut(s) 924
SfcI CTRYAG 4 cut(s) 114, 282, 582, 1005
Sfr274I CTCGAG 1 cut(s) 745
SfuI TTCGAA 1 cut(s) 409
SinI GGWCC 1 cut(s) 300
SlaI CTCGAG 1 cut(s) 745
SmlI CTYRAG 2 cut(s) 745, 932
SmoI CTYRAG 2 cut(s) 745, 932
Sse9I AATT 3 cut(s) 423, 801, 877
SsiI CCGC 2 cut(s) 561, 673
SspMI CTAG 3 cut(s) 30, 558, 1066
SstI GAGCTC 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 59, 318, 467, 567
TaaI ACNGT 3 cut(s) 400, 679, 833
TaiI ACGT 4 cut(s) 221, 493, 778, 800
TaqI TCGA 8 cut(s) 205, 215, 221, 352, 409, 515, 746, 782
TasI AATT 3 cut(s) 423, 801, 877
TatI WGTACW 2 cut(s) 118, 706
TfiI GAWTC 2 cut(s) 578, 695
Tru1I TTAA 4 cut(s) 362, 800, 863, 1050
Tru9I TTAA 4 cut(s) 362, 800, 863, 1050
TscAI CASTG 2 cut(s) 682, 836
TseFI GTSAC 2 cut(s) 394, 827
TseI GCWGC 9 cut(s) 70, 92, 95, 281, 284, 403, 622, 646, 1055
Tsp45I GTSAC 2 cut(s) 394, 827
TspDTI ATGAA 3 cut(s) 29, 65, 95
TspRI CASTG 2 cut(s) 682, 836
Tth111I GACNNNGTC 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 300
XhoI CTCGAG 1 cut(s) 745
XmiI GTMKAC 2 cut(s) 221, 515
XspI CTAG 3 cut(s) 30, 558, 1066
ZraI GACGTC 2 cut(s) 219, 491
ZrmI AGTACT 2 cut(s) 120, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.