Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

31236347 .. 31237617

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTGGATGATGAAGGGGTGTAGCCAAGACCCTAAAATACACAATAGTAGGGATCTCCCTGACTACTCCATCAAACCTGCAAATCTTCAGCCTCTACTCACTCCAGACCAAAACTCTACTTCCAACATGACCCAGAACCCTATGGTACCATTCAACGACGACCATTATCAGATGATTCCAGTGACGTCGTCTGAGCAAGGCAGAAGTTGTTGTTATAGTAATAAACAACCGAAGTCTGCAGTTCCTTGGCGAAATTCCCGATGGAGTCCAACCCCGCATCAGCTAATGGCTCTGGAAGAGCTGTATCGACATGGGTTAAAGACACCGACGGCCCAACAAATCCGACAGCTGACTGCGCAGCTTCGAAACTTTGGGAGGATTGAAGGCAAGAATGTGTTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGATCAGACGCCGTGAACTCATGTCCATGTATCAGTCTGACTCCAAAGAACAACAACAAAACTTGAGTAACAACACGGTTAGCAGTCTCCAGGACAAAGGATCTGCAGGAGTTGACTTGGTTCTTCCTCTTGAAGATGAGCAGCAGAATAAGTGGATTCTACCAAACAACTTCACTATTCTCTCTGATCAGGAATCATCTTCAATACTGCAAGAGAGGATGATGATGAGCATGGTGAAAAGCAATTCATCCAGGCAACTTGTGAAGCAATCCGATTCACCTGGACCGGCATCAGACACAAATGCGTCAGCTACATTTGTTTGTCCAAAGCTCTTGGACTTTCATCACTATTATGATTATGATTACGGTATGGTATTGACTGCAACCAATGTTTACAGAGGAGAATTCGAAGAAAGTAGTAGAGCAAATCAAACTCTGGAGCTCTTTCCACTTGAGAGCGAAAATCTTAAGGGTGCTAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

307

Amino Acids

35.28

Weight (kDa)

7.06

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	84 - 145	4.4e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	85
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	60, 544
AcsI	RAATTY	2 cut(s)	253, 839
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	2 cut(s)	185, 445
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	424, 429
AflII	CTTAAG	1 cut(s)	902
AgsI	TTSAA	4 cut(s)	154, 383, 569, 639
AjnI	CCWGG	4 cut(s)	422, 525, 686, 715
AluBI	AGCT	7 cut(s)	283, 301, 349, 361, 746, 766, 877
AluI	AGCT	7 cut(s)	283, 301, 349, 361, 746, 766, 877
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	60, 544
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	358, 577
ApoI	RAATTY	2 cut(s)	253, 839
Asp700I	GAANNNNTTC	1 cut(s)	395
Asp718I	GGTACC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	331, 719
AsuHPI	GGTGA	2 cut(s)	682, 705
AsuII	TTCGAA	2 cut(s)	364, 843
AvaII	GGWCC	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	2 cut(s)	370, 589
BccI	CCATC	2 cut(s)	77, 255
BceAI	ACGGC	2 cut(s)	345, 432
BciT130I	CCWGG	4 cut(s)	424, 527, 688, 717
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	527
BfmI	CTRYAG	2 cut(s)	237, 540
BfrI	CTTAAG	1 cut(s)	902
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	359, 578
BlsI	GCNGC	2 cut(s)	360, 579
Bme1390I	CCNGG	4 cut(s)	424, 527, 688, 717
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	331, 719
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	4 cut(s)	424, 527, 688, 717
BmsI	GCATC	2 cut(s)	286, 734
BpmI	CTGGAG	3 cut(s)	87, 509, 893
Bpu10I	CCTNAGC	1 cut(s)	912
Bpu14I	TTCGAA	2 cut(s)	364, 843
BpuEI	CTTGAG	2 cut(s)	520, 908
BsaHI	GRCGYC	2 cut(s)	185, 445
BsaJI	CCNNGG	2 cut(s)	245, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 429
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	2 cut(s)	179, 407
BseBI	CCWGG	4 cut(s)	424, 527, 688, 717
BseDI	CCNNGG	2 cut(s)	245, 423
BseGI	GGATG	3 cut(s)	12, 660, 683
BseLI	CCNNNNNNNGG	2 cut(s)	424, 429
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	179, 407
BseRI	GAGGAG	1 cut(s)	849
BseXI	GCAGC	2 cut(s)	370, 589
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	424, 429
BsmAI	GTCTC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	332
Bsp119I	TTCGAA	2 cut(s)	364, 843
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	4 cut(s)	52, 438, 536, 622
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	2 cut(s)	241, 544
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	60, 544
BspQI	GCTCTTC	1 cut(s)	291
BspT104I	TTCGAA	2 cut(s)	364, 843
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	902
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	179, 407
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	2 cut(s)	245, 423
BssMI	GATC	4 cut(s)	52, 438, 536, 622
BssNI	GRCGYC	2 cut(s)	185, 445
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	4 cut(s)	424, 527, 688, 717
Bst4CI	ACNGT	2 cut(s)	514, 803
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	2 cut(s)	185, 445
BstAFI	CTTAAG	1 cut(s)	902
BstBI	TTCGAA	2 cut(s)	364, 843
BstDEI	CTNAG	2 cut(s)	192, 912
BstF5I	GGATG	3 cut(s)	12, 660, 683
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	4 cut(s)	55, 441, 539, 625
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	4 cut(s)	52, 438, 536, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	4 cut(s)	424, 527, 688, 717
BstSCI	CCNGG	4 cut(s)	422, 525, 686, 715
BstSFI	CTRYAG	2 cut(s)	237, 540
BstV1I	GCAGC	2 cut(s)	370, 589
BstX2I	RGATCY	2 cut(s)	52, 536
BstYI	RGATCY	2 cut(s)	52, 536
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	12, 660, 683
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	331, 719
CseI	GACGC	2 cut(s)	453, 729
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	5 cut(s)	127, 311, 457, 463, 667
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	192, 912
DpnI	GATC	4 cut(s)	54, 440, 538, 624
DpnII	GATC	4 cut(s)	52, 438, 536, 622
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	877
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	879
Eco47I	GGWCC	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	877
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	4 cut(s)	422, 525, 686, 715
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	5 cut(s)	130, 314, 460, 466, 670
FatI	CATG	5 cut(s)	126, 310, 456, 462, 666
FauI	CCCGC	1 cut(s)	282
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	359, 578
FokI	GGATG	3 cut(s)	19, 667, 670
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	2 cut(s)	359, 578
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	2 cut(s)	359, 578
GsuI	CTGGAG	3 cut(s)	87, 509, 893
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	722
HgaI	GACGC	2 cut(s)	453, 729
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	2 cut(s)	185, 445
Hin1II	CATG	5 cut(s)	130, 314, 460, 466, 670
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	6 cut(s)	175, 265, 476, 592, 629, 710
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	2 cut(s)	682, 705
Hpy166II	GTNNAC	3 cut(s)	452, 550, 829
Hpy188I	TCNGA	9 cut(s)	171, 193, 344, 411, 443, 475, 622, 709, 730
Hpy188III	TCNNGA	6 cut(s)	104, 258, 293, 566, 626, 872
Hpy8I	GTNNAC	3 cut(s)	452, 550, 829
Hpy99I	CGWCG	3 cut(s)	161, 190, 331
HpyAV	CCTTC	2 cut(s)	7, 377
HpyCH4III	ACNGT	2 cut(s)	514, 803
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	80, 239, 542, 646, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	192, 912
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	2 cut(s)	185, 445
Hsp92II	CATG	5 cut(s)	130, 314, 460, 466, 670
HspAI	GCGC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	52, 438, 536, 622
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	2 cut(s)	370, 589
LweI	GCATC	2 cut(s)	286, 734
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	181, 503
MalI	GATC	4 cut(s)	54, 440, 538, 624
MboI	GATC	4 cut(s)	52, 438, 536, 622
MboII	GAAGA	7 cut(s)	77, 308, 448, 551, 581, 627, 857
MflI	RGATCY	2 cut(s)	52, 536
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	3 cut(s)	253, 679, 839
MlyI	GAGTC	2 cut(s)	274, 470
MmeI	TCCRAC	3 cut(s)	147, 293, 367
MnlI	CCTC	6 cut(s)	102, 369, 423, 573, 645, 827
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	2 cut(s)	317, 903
MslI	CAYNNNNRTG	2 cut(s)	461, 786
MspA1I	CMGCKG	1 cut(s)	349
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	4 cut(s)	424, 527, 688, 717
MvaI	CCWGG	4 cut(s)	424, 527, 688, 717
MwoI	GCNNNNNNNGC	1 cut(s)	355
NdeII	GATC	4 cut(s)	52, 438, 536, 622
NlaIII	CATG	5 cut(s)	130, 314, 460, 466, 670
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	357
NspV	TTCGAA	2 cut(s)	364, 843
PciSI	GCTCTTC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	175, 592, 629, 710
PflFI	GACNNNGTC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	2 cut(s)	360, 579
PleI	GAGTC	2 cut(s)	273, 470
PpsI	GAGTC	2 cut(s)	273, 470
Psp124BI	GAGCTC	1 cut(s)	879
Psp6I	CCWGG	4 cut(s)	422, 525, 686, 715
PspGI	CCWGG	4 cut(s)	422, 525, 686, 715
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	331, 719
PstI	CTGCAG	2 cut(s)	241, 544
PsuI	RGATCY	2 cut(s)	52, 536
PsyI	GACNNNGTC	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	2 cut(s)	461, 786
SacI	GAGCTC	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	317, 903
SatI	GCNGC	2 cut(s)	359, 578
Sau3AI	GATC	4 cut(s)	52, 438, 536, 622
Sau96I	GGNCC	2 cut(s)	331, 719
SchI	GAGTC	2 cut(s)	274, 470
ScrFI	CCNGG	4 cut(s)	424, 527, 688, 717
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	2 cut(s)	286, 734
SfcI	CTRYAG	2 cut(s)	237, 540
SfuI	TTCGAA	2 cut(s)	364, 843
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	461, 786
SmlI	CTYRAG	3 cut(s)	499, 887, 902
SmoI	CTYRAG	3 cut(s)	499, 887, 902
Sse9I	AATT	3 cut(s)	253, 679, 839
SsiI	CCGC	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	879
StyD4I	CCNGG	4 cut(s)	422, 525, 686, 715
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	514, 803
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	3 cut(s)	307, 364, 843
TasI	AATT	3 cut(s)	253, 679, 839
TfiI	GAWTC	4 cut(s)	175, 592, 629, 710
Tru1I	TTAA	2 cut(s)	317, 903
Tru9I	TTAA	2 cut(s)	317, 903
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	358, 577
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	26, 672, 767
TspRI	CASTG	1 cut(s)	186
Tth111I	GACNNNGTC	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	902
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	253, 839
XmnI	GAANNNNTTC	1 cut(s)	395
ZraI	GACGTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.