Rh4DG392700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001847
Physical Location & Seq
Reverse (-)
60855770 .. 60856995
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG392700.1

Sequence Viewer

Length: 474 bp
ATGTCCATGTATCAGTCTGACTCACAACAACAACAACAAACTTTGACTAACACCACAATTAGCGGTCTCCCGGACAAAGAATCTGCAGGAGTTGACTTTGTTGGTCGTCTTGAAGTTGAGCAGCAAAATAAGCGGACACTACCAAAGTTTACTTTACCTTCTGATCAGGAATCATCTTCAGTACCGCGAGAGAGGATGATGAGCATGGTGAAAAGAAATTCCTCCAGGCAACTTGTGGAACAATCCGGTTCACCTGGACCGACCTCAGACACAAACTGGTCAGATACATTAATTTACAAAAAGCCCTTGGACTTTCATCACTATTACGATTATGATTACGGTATGATATTGACTACACCCAATATTTACAAAGACGAGCAAGAAGAAGAAAGTAGAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAGAGTGACAATCTCAAGGGTGCTAAGGATACGAAATTACACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

4.87

Isoelectric Point (pI)

67.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 187
AciI CCGC 3 cut(s) 63, 133, 185
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 183
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 2 cut(s) 224, 253
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 217
AseI ATTAAT 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 220, 243
AvaII GGWCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 226, 255
BciVI GTATCC 1 cut(s) 448
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 448
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 3 cut(s) 71, 226, 255
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 3 cut(s) 71, 226, 255
BpmI CTGGAG 2 cut(s) 208, 431
Bpu10I CCTNAGC 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 425, 446
BpuMI CCSGG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 2 cut(s) 226, 255
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 2 cut(s) 71, 246
BsmAI GTCTC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 3 cut(s) 63, 133, 185
BspCNI CTCAG 1 cut(s) 278
BspFNI CGCG 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 226, 255
Bst4CI ACNGT 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 265, 450
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 226, 255
BstSCI CCNGG 3 cut(s) 69, 224, 253
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 133
BsuI GTATCC 1 cut(s) 448
BtsCI GGATG 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 7, 205
CviJI RGCY 2 cut(s) 304, 415
CviKI_1 RGCY 2 cut(s) 304, 415
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 265, 450
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 224, 253
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 10, 208
FaiI YATR 5 cut(s) 8, 206, 333, 344, 472
FatI CATG 2 cut(s) 6, 204
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
GsuI CTGGAG 2 cut(s) 208, 431
HapII CCGG 2 cut(s) 71, 246
Hin1II CATG 2 cut(s) 10, 208
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 3 cut(s) 20, 80, 170
HpaII CCGG 2 cut(s) 71, 246
HphI GGTGA 2 cut(s) 220, 243
Hpy166II GTNNAC 3 cut(s) 94, 150, 251
Hpy188I TCNGA 4 cut(s) 19, 163, 268, 283
Hpy188III TCNNGA 3 cut(s) 110, 167, 410
Hpy8I GTNNAC 3 cut(s) 94, 150, 251
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 265, 450
Hsp92II CATG 2 cut(s) 10, 208
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 431
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 168, 395, 398
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 4 cut(s) 57, 217, 291, 461
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 186, 232, 274
MseI TTAA 1 cut(s) 290
MspI CCGG 2 cut(s) 71, 246
MspR9I CCNGG 3 cut(s) 71, 226, 255
MvaI CCWGG 2 cut(s) 226, 255
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 10, 208
NmuCI GTSAC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 80, 170
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PshBI ATTAAT 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 224, 253
PspGI CCWGG 2 cut(s) 224, 253
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 71, 226, 255
SduI GDGCHC 1 cut(s) 417
SetI ASST 5 cut(s) 160, 256, 266, 417, 471
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 425, 440
SmoI CTYRAG 2 cut(s) 425, 440
Sse9I AATT 4 cut(s) 57, 217, 291, 461
SsiI CCGC 3 cut(s) 63, 133, 185
SspI AATATT 1 cut(s) 364
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 69, 224, 253
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 341
TaqII GACCGA 1 cut(s) 274
TasI AATT 4 cut(s) 57, 217, 291, 461
TfiI GAWTC 2 cut(s) 80, 170
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 257
VspI ATTAAT 1 cut(s) 290
XapI RAATTY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.