Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

28360619 .. 28362318

Gene Structure 1700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTGGATGATGATGGGGCGTAGCAACGGTGGTTGTAGAGACCCCAACATAAACAATAATAGGGATCTGCCTGAGTACTCGATCAAAGCTGCAAATCCTCAGCCTGCAGTACAGCCAGTACTATTCACTCCAAAGCTTAGCTCTACTTCAAACATGACCCAAAACCCTGTGTTACCATTCAACCACCACCATCATCGGATGGTTCCAGTAACTTCTGATGAGCAAGGCAGAAGTAGCAGCGGTTGTTTTTATAGTGATAAACAACCGGCAGTTGGAGCTCCTCCGCGAAGCTCCCGATGGAATCCAACCCCGGAGCAGATAATGGACCTGGAAGAGCTGTATCGATCTGGGATCAAGACACCGACGGCCCAACAAATCAGACAGGTGACTGCGCGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGTGAACTCATCTCCATGCATCAGTCTGACACTAAACAACAGCAACAAACTTTGATTAACAGCACGATTACCAGTCTCCAGAAAAAAGAATCTGCAGGAGTTAGCTCTGTTGGTCGTCTTGAAGTTGAGCAGCAGAATAGGCCGACCCTACCAAACTTCACTGTTCTTTTCGATCAGGAATCATCTTCAGTACTGCAAGAGAGAATGATGAGCATGGTGAAAAGCAATTCCTCCAGGCTACTTGTGGAATCCGATTCACCTGGACCGACCTCATCAGACACAAACGCGTCAGCTACATTAATTTACACAAAGCTCTTGGACTTTCATCACTATTATGATTATGATTACGGTATGGTATTGACTGCACCCAATATTTACAAAGAAGAAGAAAAAGAAAGCAGAGAAACTCAAACTCTAGAGCTCTTTCCACTTGAGAGCGACAATCTTAAGAGTGCTAAGGATACCAAATTACCTATGAGCAGAACAAGCACTGACACTACTGCAGATTTCAAGGACGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

336

Amino Acids

38.49

Weight (kDa)

8.37

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	96 - 157	1.1e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	286, 394, 767
AciI	CCGC	3 cut(s)	240, 284, 394
AclWI	GGATC	2 cut(s)	72, 359
AcuI	CTGAAG	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	4 cut(s)	77, 111, 120, 672
AfiI	CCNNNNNNNGG	3 cut(s)	272, 460, 465
AflII	CTTAAG	1 cut(s)	926
AflIII	ACRYGT	1 cut(s)	765
AgsI	TTSAA	5 cut(s)	150, 181, 419, 602, 991
AjnI	CCWGG	4 cut(s)	327, 458, 713, 739
Alw21I	GWGCWC	2 cut(s)	280, 903
Alw26I	GTCTC	3 cut(s)	33, 469, 560
AlwI	GGATC	2 cut(s)	72, 359
AoxI	GGCC	2 cut(s)	366, 620
ApeKI	GCWGC	3 cut(s)	89, 237, 610
AseI	ATTAAT	1 cut(s)	779
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	3 cut(s)	325, 367, 743
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	3 cut(s)	397, 709, 729
AsuII	TTCGAA	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	325, 743
BanII	GRGCYC	2 cut(s)	280, 903
Bbv12I	GWGCWC	2 cut(s)	280, 903
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	76, 249, 622
BccI	CCATC	4 cut(s)	7, 193, 198, 291
BceAI	ACGGC	2 cut(s)	381, 465
BciT130I	CCWGG	4 cut(s)	329, 460, 715, 741
BciVI	GTATCC	1 cut(s)	934
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	3 cut(s)	33, 469, 560
BfaI	CTAG	1 cut(s)	896
BfmI	CTRYAG	3 cut(s)	105, 573, 981
BfrI	CTTAAG	1 cut(s)	926
BfuI	GTATCC	1 cut(s)	934
BisI	GCNGC	4 cut(s)	90, 238, 395, 611
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	4 cut(s)	91, 239, 396, 612
BmcAI	AGTACT	3 cut(s)	77, 120, 672
Bme1390I	CCNGG	5 cut(s)	311, 329, 460, 715, 741
Bme18I	GGWCC	2 cut(s)	325, 743
BmgT120I	GGNCC	3 cut(s)	325, 367, 743
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	5 cut(s)	311, 329, 460, 715, 741
BmsI	GCATC	1 cut(s)	508
BpmI	CTGGAG	2 cut(s)	542, 697
Bpu10I	CCTNAGC	2 cut(s)	99, 936
Bpu1102I	GCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	309, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 460, 465
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	4 cut(s)	116, 206, 443, 552
BseBI	CCWGG	4 cut(s)	329, 460, 715, 741
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	309, 459
BseGI	GGATG	2 cut(s)	12, 204
BseLI	CCNNNNNNNGG	3 cut(s)	272, 460, 465
BseMII	CTCAG	2 cut(s)	63, 113
BseNI	ACTGG	4 cut(s)	116, 206, 443, 552
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	3 cut(s)	76, 249, 622
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	3 cut(s)	286, 394, 767
BshFI	GGCC	2 cut(s)	368, 622
BshVI	ATCGAT	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	280, 903
BsiSI	CCGG	2 cut(s)	266, 311
BslI	CCNNNNNNNGG	3 cut(s)	272, 460, 465
BsmAI	GTCTC	3 cut(s)	33, 469, 560
BsmBI	CGTCTC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	368, 622
Bso31I	GGTCTC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	280, 903
Bsp143I	GATC	5 cut(s)	64, 81, 344, 351, 652
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	3 cut(s)	240, 284, 394
BspANI	GGCC	2 cut(s)	368, 622
BspCNI	CTCAG	2 cut(s)	64, 112
BspDI	ATCGAT	1 cut(s)	343
BspFNI	CGCG	3 cut(s)	286, 394, 767
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	3 cut(s)	109, 577, 985
BspPI	GGATC	2 cut(s)	72, 359
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	400
BspTI	CTTAAG	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	4 cut(s)	116, 206, 443, 552
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	309, 459
BssMI	GATC	5 cut(s)	64, 81, 344, 351, 652
BssNI	GRCGYC	1 cut(s)	478
Bst2UI	CCWGG	4 cut(s)	329, 460, 715, 741
Bst4CI	ACNGT	3 cut(s)	29, 643, 830
Bst6I	CTCTTC	2 cut(s)	327, 467
BstACI	GRCGYC	1 cut(s)	478
BstAFI	CTTAAG	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	4 cut(s)	72, 99, 137, 936
BstF5I	GGATG	2 cut(s)	12, 204
BstFNI	CGCG	3 cut(s)	286, 394, 767
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	5 cut(s)	67, 84, 347, 354, 655
BstMAI	GTCTC	3 cut(s)	33, 469, 560
BstMBI	GATC	5 cut(s)	64, 81, 344, 351, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 275, 619, 966
BstNI	CCWGG	4 cut(s)	329, 460, 715, 741
BstSCI	CCNGG	5 cut(s)	309, 327, 458, 713, 739
BstSFI	CTRYAG	3 cut(s)	105, 573, 981
BstUI	CGCG	3 cut(s)	286, 394, 767
BstV1I	GCAGC	3 cut(s)	76, 249, 622
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	2 cut(s)	368, 622
BsuTUI	ATCGAT	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	12, 204
BtsIMutI	CAGTG	2 cut(s)	639, 969
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	325, 367, 743
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	2 cut(s)	486, 756
Csp6I	GTAC	4 cut(s)	76, 110, 119, 671
CviAII	CATG	3 cut(s)	154, 496, 694
CviQI	GTAC	4 cut(s)	76, 110, 119, 671
DdeI	CTNAG	4 cut(s)	72, 99, 137, 936
DpnI	GATC	5 cut(s)	66, 83, 346, 353, 654
DpnII	GATC	5 cut(s)	64, 81, 344, 351, 652
Eam1104I	CTCTTC	2 cut(s)	327, 467
EarI	CTCTTC	2 cut(s)	327, 467
Ecl136II	GAGCTC	2 cut(s)	278, 901
Eco24I	GRGCYC	2 cut(s)	280, 903
Eco31I	GGTCTC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	325, 743
Eco53kI	GAGCTC	2 cut(s)	278, 901
Eco57I	CTGAAG	1 cut(s)	651
EcoICRI	GAGCTC	2 cut(s)	278, 901
EcoRII	CCWGG	4 cut(s)	327, 458, 713, 739
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	2 cut(s)	280, 903
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	3 cut(s)	157, 499, 697
FatI	CATG	3 cut(s)	153, 495, 693
Fnu4HI	GCNGC	4 cut(s)	90, 238, 395, 611
FokI	GGATG	2 cut(s)	19, 211
FriOI	GRGCYC	2 cut(s)	280, 903
Fsp4HI	GCNGC	4 cut(s)	90, 238, 395, 611
FspBI	CTAG	1 cut(s)	896
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	4 cut(s)	90, 238, 395, 611
GsuI	CTGGAG	2 cut(s)	542, 697
HaeIII	GGCC	2 cut(s)	368, 622
HapII	CCGG	2 cut(s)	266, 311
HgaI	GACGC	2 cut(s)	486, 756
HhaI	GCGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	3 cut(s)	157, 499, 697
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	5 cut(s)	301, 569, 659, 728, 734
HpaII	CCGG	2 cut(s)	266, 311
HphI	GGTGA	3 cut(s)	397, 709, 729
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	7 cut(s)	198, 217, 380, 447, 508, 733, 757
Hpy188III	TCNNGA	6 cut(s)	294, 355, 559, 599, 656, 896
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	3 cut(s)	29, 643, 830
HpyCH4V	TGCA	7 cut(s)	92, 107, 499, 575, 676, 845, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 275, 619, 966
HpyF3I	CTNAG	4 cut(s)	72, 99, 137, 936
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	3 cut(s)	157, 499, 697
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	5 cut(s)	64, 81, 344, 351, 652
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	4 cut(s)	275, 283, 296, 313
Lsp1109I	GCAGC	3 cut(s)	76, 249, 622
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	896
MaeIII	GTNAC	3 cut(s)	171, 208, 385
MalI	GATC	5 cut(s)	66, 83, 346, 353, 654
MboI	GATC	5 cut(s)	64, 81, 344, 351, 652
MboII	GAAGA	5 cut(s)	344, 484, 657, 875, 878
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	280, 903
MluCI	AATT	3 cut(s)	706, 780, 947
MluI	ACGCGT	1 cut(s)	765
MmeI	TCCRAC	2 cut(s)	253, 329
MnlI	CCTC	6 cut(s)	108, 291, 405, 459, 721, 760
Mph1103I	ATGCAT	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	537, 779, 927
MslI	CAYNNNNRTG	2 cut(s)	494, 813
MspA1I	CMGCKG	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	926
MspI	CCGG	2 cut(s)	266, 311
MspR9I	CCNGG	5 cut(s)	311, 329, 460, 715, 741
MvaI	CCWGG	4 cut(s)	329, 460, 715, 741
MvnI	CGCG	3 cut(s)	286, 394, 767
MwoI	GCNNNNNNNGC	4 cut(s)	234, 275, 619, 966
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	5 cut(s)	64, 81, 344, 351, 652
NlaIII	CATG	3 cut(s)	157, 499, 697
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	385
NsiI	ATGCAT	1 cut(s)	501
NspV	TTCGAA	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	5 cut(s)	301, 569, 659, 728, 734
PkrI	GCNGC	4 cut(s)	91, 239, 396, 612
PshBI	ATTAAT	1 cut(s)	779
Psp124BI	GAGCTC	2 cut(s)	280, 903
Psp6I	CCWGG	4 cut(s)	327, 458, 713, 739
PspGI	CCWGG	4 cut(s)	327, 458, 713, 739
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	3 cut(s)	325, 367, 743
PstI	CTGCAG	3 cut(s)	109, 577, 985
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	4 cut(s)	77, 111, 120, 672
RsaNI	GTAC	4 cut(s)	76, 110, 119, 671
RseI	CAYNNNNRTG	2 cut(s)	494, 813
SacI	GAGCTC	2 cut(s)	280, 903
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	537, 779, 927
SatI	GCNGC	4 cut(s)	90, 238, 395, 611
Sau3AI	GATC	5 cut(s)	64, 81, 344, 351, 652
Sau96I	GGNCC	3 cut(s)	325, 367, 743
ScaI	AGTACT	3 cut(s)	77, 120, 672
ScrFI	CCNGG	5 cut(s)	311, 329, 460, 715, 741
SduI	GDGCHC	2 cut(s)	280, 903
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	3 cut(s)	105, 573, 981
SfuI	TTCGAA	1 cut(s)	400
SinI	GGWCC	2 cut(s)	325, 743
SmiMI	CAYNNNNRTG	2 cut(s)	494, 813
SmlI	CTYRAG	2 cut(s)	911, 926
SmoI	CTYRAG	2 cut(s)	911, 926
Sse9I	AATT	3 cut(s)	706, 780, 947
SsiI	CCGC	3 cut(s)	240, 284, 394
SspI	AATATT	2 cut(s)	853, 1004
SspMI	CTAG	1 cut(s)	896
SstI	GAGCTC	2 cut(s)	280, 903
StyD4I	CCNGG	5 cut(s)	309, 327, 458, 713, 739
TaaI	ACNGT	3 cut(s)	29, 643, 830
TaqI	TCGA	4 cut(s)	80, 343, 400, 651
TaqII	GACCGA	1 cut(s)	760
TasI	AATT	3 cut(s)	706, 780, 947
TatI	WGTACW	4 cut(s)	75, 109, 118, 670
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	5 cut(s)	301, 569, 659, 728, 734
Tru1I	TTAA	3 cut(s)	537, 779, 927
Tru9I	TTAA	3 cut(s)	537, 779, 927
TscAI	CASTG	2 cut(s)	646, 976
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	3 cut(s)	89, 237, 610
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	794
TspRI	CASTG	2 cut(s)	646, 976
Vha464I	CTTAAG	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	325, 743
VspI	ATTAAT	1 cut(s)	779
XbaI	TCTAGA	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	1 cut(s)	896
ZrmI	AGTACT	3 cut(s)	77, 120, 672
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.