Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012670.1

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

64755 .. 65598

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012670.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgatgggtagcagcggtggttgtagagaccctaatagtagggctctgcctgagtactactcgatcaaagctgcatatcctcaacctgcagtactactcactccaaaccttggctgtacttccaacatgacccaaatccctttgttaccattcaaccaccaccatcagatagttccagcgacgttgaatgagcaaggcagaaatagcagtgaatgtttttatagtgacaaacaaccggcagctgcagcttctcctagaagttcccgatggagtccaaccccggagcagataatgcatctggaagagctgtatcgatctgggatcaagacaccgacggcccaacaaatccgacaggtggctgcacggcttcgaaactatgggagggttgaaggcaagaatgtcttctactggtttcagaatcaccgagccagggagaggcagaagacacgccgtgatgaactcatgtccatgtatcagtctgacatcaaacaacaacaacaacaacaacaaactttgactaacaacacaattagcagtctccgggacaaagaatctgcgggaggtaccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

190

Amino Acids

21.61

Weight (kDa)

9.63

Isoelectric Point (pI)

74.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	110
AciI	CCGC	2 cut(s)	15, 557
AclWI	GGATC	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	4 cut(s)	56, 93, 118, 565
AfiI	CCNNNNNNNGG	4 cut(s)	110, 355, 430, 435
AgsI	TTSAA	3 cut(s)	154, 187, 389
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	71, 242, 248, 307
AluI	AGCT	4 cut(s)	71, 242, 248, 307
Alw26I	GTCTC	2 cut(s)	21, 542
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	6 cut(s)	12, 71, 239, 242, 245, 359
Asp700I	GAANNNNTTC	1 cut(s)	401
Asp718I	GGTACC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	281, 542
AsuHPI	GGTGA	1 cut(s)	413
AsuII	TTCGAA	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	2 cut(s)	394, 449
BbvI	GCAGC	6 cut(s)	24, 58, 229, 251, 257, 346
BccI	CCATC	2 cut(s)	171, 261
BceAI	ACGGC	3 cut(s)	351, 380, 435
BciT130I	CCWGG	1 cut(s)	430
BcnI	CCSGG	2 cut(s)	281, 542
BcoDI	GTCTC	2 cut(s)	21, 542
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	2 cut(s)	87, 243
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	6 cut(s)	13, 72, 240, 243, 246, 360
BlsI	GCNGC	6 cut(s)	14, 73, 241, 244, 247, 361
BmcAI	AGTACT	2 cut(s)	56, 93
Bme1390I	CCNGG	3 cut(s)	281, 430, 542
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	3 cut(s)	281, 430, 542
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	394, 449
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu14I	TTCGAA	1 cut(s)	370
BpuMI	CCSGG	2 cut(s)	281, 542
Bsa29I	ATCGAT	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	109, 279, 429
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 355, 430, 435
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	430
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	109, 279, 429
BseLI	CCNNNNNNNGG	4 cut(s)	110, 355, 430, 435
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	6 cut(s)	24, 58, 229, 251, 257, 346
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	563
BshVI	ATCGAT	1 cut(s)	313
BsiSI	CCGG	3 cut(s)	236, 281, 541
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	4 cut(s)	110, 355, 430, 435
BsmAI	GTCTC	2 cut(s)	21, 542
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	338
Bso31I	GGTCTC	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	63, 314, 321
BspACI	CCGC	2 cut(s)	15, 557
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	2 cut(s)	91, 247
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	329
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	109, 279, 429
BssMI	GATC	3 cut(s)	63, 314, 321
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	3 cut(s)	66, 317, 324
BstMAI	GTCTC	2 cut(s)	21, 542
BstMBI	GATC	3 cut(s)	63, 314, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 245, 292
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	279, 428, 540
BstSFI	CTRYAG	2 cut(s)	87, 243
BstV1I	GCAGC	6 cut(s)	24, 58, 229, 251, 257, 346
BstV2I	GAAGAC	2 cut(s)	394, 449
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	338
BsuTUI	ATCGAT	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	337
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	55, 92, 117, 564
CviAII	CATG	3 cut(s)	127, 463, 469
CviQI	GTAC	4 cut(s)	55, 92, 117, 564
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	65, 316, 323
DpnII	GATC	3 cut(s)	63, 314, 321
DraIII	CACNNNGTG	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	130, 466, 472
FaiI	YATR	6 cut(s)	76, 128, 222, 378, 464, 470
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	3 cut(s)	126, 462, 468
FauI	CCCGC	1 cut(s)	550
Fnu4HI	GCNGC	6 cut(s)	13, 72, 240, 243, 246, 360
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	6 cut(s)	13, 72, 240, 243, 246, 360
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	6 cut(s)	13, 72, 240, 243, 246, 360
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	3 cut(s)	236, 281, 541
Hin1II	CATG	3 cut(s)	130, 466, 472
HinfI	GANTC	3 cut(s)	271, 418, 551
HpaII	CCGG	3 cut(s)	236, 281, 541
HphI	GGTGA	1 cut(s)	413
Hpy188I	TCNGA	4 cut(s)	168, 350, 417, 481
Hpy188III	TCNNGA	3 cut(s)	264, 299, 325
Hpy99I	CGWCG	2 cut(s)	184, 337
HpyAV	CCTTC	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	5 cut(s)	74, 89, 245, 295, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 245, 292
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	130, 466, 472
KpnI	GGTACC	1 cut(s)	567
Kzo9I	GATC	3 cut(s)	63, 314, 321
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	6 cut(s)	24, 58, 229, 251, 257, 346
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	144, 224
MalI	GATC	3 cut(s)	65, 316, 323
MboI	GATC	3 cut(s)	63, 314, 321
MboII	GAAGA	3 cut(s)	314, 394, 454
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	3 cut(s)	147, 299, 373
MnlI	CCTC	4 cut(s)	90, 375, 429, 554
Mph1103I	ATGCAT	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	1 cut(s)	571
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	2 cut(s)	15, 242
MspI	CCGG	3 cut(s)	236, 281, 541
MspR9I	CCNGG	3 cut(s)	281, 430, 542
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	204, 245, 292
NciI	CCSGG	2 cut(s)	281, 542
NdeII	GATC	3 cut(s)	63, 314, 321
NlaIII	CATG	3 cut(s)	130, 466, 472
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	418, 551
PflMI	CCANNNNNTGG	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	6 cut(s)	14, 73, 241, 244, 247, 361
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	2 cut(s)	91, 247
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	4 cut(s)	56, 93, 118, 565
RsaNI	GTAC	4 cut(s)	55, 92, 117, 564
RseI	CAYNNNNRTG	1 cut(s)	467
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	6 cut(s)	13, 72, 240, 243, 246, 360
Sau3AI	GATC	3 cut(s)	63, 314, 321
Sau96I	GGNCC	1 cut(s)	337
ScaI	AGTACT	2 cut(s)	56, 93
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	3 cut(s)	281, 430, 542
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	73, 88, 111, 185, 244, 250, 309, 357, 565
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	2 cut(s)	87, 243
SfuI	TTCGAA	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	15, 557
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	279, 428, 540
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	3 cut(s)	62, 313, 370
TasI	AATT	1 cut(s)	528
TatI	WGTACW	3 cut(s)	54, 91, 116
TfiI	GAWTC	2 cut(s)	418, 551
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	6 cut(s)	12, 71, 239, 242, 245, 359
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	2 cut(s)	56, 93
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.