Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

46152434 .. 46155672

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATGGGTAGCAGCGGTGGTTGTGGAGACCCTAAAACTAGGGTTCTGCCTGAGTACTTCTCGATCAAAGCTGCATATCCTCAGCCTCTACTCACTCCAAAGCTTAGCTGTACTTCCAACATGACCCAAATCCCTTTGTTACCATTCAACCACCACCATCAGATGGTTCCAGTGACGTCGAATGAGCAAGGCAGACATAGCAGTGATTGTTTTTATAGTGATAAACAACCGGCAGCTGCAGCTCCTCCTCGAAGTTCCCGATGGACTCCAACCCCGGAGCAGATAATGCATCTGGAAGAGCTGTATCGATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGGCTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCGCAGAGCCAGGGAGAGGCAGAAGACACGCCGTGAACTCATGTCCATGCATCAGTCTGACTCTAAACAACAACAACAACAAGCTTTGACTAAGAACACAATTAGCAGTCTCCGGGACAAAGAATCTGCAGGAGTTGAGCAGCAGAATAGGCGAACACTACCAAGCTTCACTCTTCTTACCAATCAGAAATCATCTTCAGTACTACAAGAGCGGATGATGAGCATGGTGAAAAGCAATTCCTCCAGGCTACTTATGGAACACATCGATTCACCTGGACTGACCTCAAACATAAACAAGTCAGCTACATTAGTTTACAGAAAGCTCTTGGACTTTCATCACTATTATGATTACGACTACGGTATGGTACTATTGATTGCACCGAATATTTACAAAGAAGAAGAAGAAGAAGAAGAAAGCAGAGAAACTCAAACTCTTAAGCTCTTTCCACTCGAGAGTGACACTCTTAAGGGTGCTAAGGATACCAAATTACCTATGAGCAGAACCAGCACGGACACTACTTCAAATTTCATGGCAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

320

Amino Acids

36.82

Weight (kDa)

9.26

Isoelectric Point (pI)

71.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	84 - 145	8.8e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	625
AciI	CCGC	3 cut(s)	15, 415, 625
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	937
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	4 cut(s)	56, 112, 615, 780
AfiI	CCNNNNNNNGG	3 cut(s)	163, 349, 429
AflII	CTTAAG	2 cut(s)	848, 878
AgsI	TTSAA	3 cut(s)	148, 383, 936
AjnI	CCWGG	3 cut(s)	422, 656, 685
Alw26I	GTCTC	2 cut(s)	21, 527
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	7 cut(s)	12, 71, 233, 236, 239, 353, 553
ApoI	RAATTY	1 cut(s)	937
Asp700I	GAANNNNTTC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	2 cut(s)	275, 527
AsuHPI	GGTGA	2 cut(s)	652, 675
AsuII	TTCGAA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	863
BbsI	GAAGAC	1 cut(s)	443
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	7 cut(s)	24, 58, 223, 245, 251, 340, 565
BccI	CCATC	3 cut(s)	157, 165, 255
BceAI	ACGGC	3 cut(s)	345, 374, 429
BciT130I	CCWGG	3 cut(s)	424, 658, 687
BciVI	GTATCC	1 cut(s)	886
BcnI	CCSGG	2 cut(s)	275, 527
BcoDI	GTCTC	2 cut(s)	21, 527
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	2 cut(s)	237, 540
BfrI	CTTAAG	2 cut(s)	848, 878
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	7 cut(s)	13, 72, 234, 237, 240, 354, 554
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	7 cut(s)	14, 73, 235, 238, 241, 355, 555
BmcAI	AGTACT	2 cut(s)	56, 615
Bme1390I	CCNGG	5 cut(s)	275, 424, 527, 658, 687
BmeT110I	CYCGRG	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	5 cut(s)	275, 424, 527, 658, 687
BmsI	GCATC	2 cut(s)	298, 472
BpiI	GAAGAC	1 cut(s)	443
BplI	GAGNNNNNCTC	4 cut(s)	44, 76, 859, 891
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	2 cut(s)	81, 888
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	364
BpuMI	CCSGG	2 cut(s)	275, 527
Bsa29I	ATCGAT	2 cut(s)	307, 678
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	273, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 349, 429
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	170, 407
BseBI	CCWGG	3 cut(s)	424, 658, 687
BseCI	ATCGAT	2 cut(s)	307, 678
BseDI	CCNNGG	2 cut(s)	273, 423
BseGI	GGATG	1 cut(s)	633
BseLI	CCNNNNNNNGG	3 cut(s)	163, 349, 429
BseMII	CTCAG	2 cut(s)	42, 95
BseNI	ACTGG	2 cut(s)	170, 407
BseRI	GAGGAG	2 cut(s)	234, 237
BseXI	GCAGC	7 cut(s)	24, 58, 223, 245, 251, 340, 565
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	332
BshVI	ATCGAT	2 cut(s)	307, 678
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	3 cut(s)	230, 275, 526
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	3 cut(s)	163, 349, 429
BsmAI	GTCTC	2 cut(s)	21, 527
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	863
Bsp119I	TTCGAA	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	63, 308, 315
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	3 cut(s)	15, 415, 625
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	43, 94
BspDI	ATCGAT	2 cut(s)	307, 678
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	2 cut(s)	241, 544
BspPI	GGATC	1 cut(s)	323
BspQI	GCTCTTC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	364
BspTI	CTTAAG	2 cut(s)	848, 878
BspTNI	GGTCTC	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	625
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	170, 407
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	273, 423
BssMI	GATC	3 cut(s)	63, 308, 315
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	3 cut(s)	424, 658, 687
Bst4CI	ACNGT	1 cut(s)	773
Bst6I	CTCTTC	2 cut(s)	291, 591
BstACI	GRCGYC	1 cut(s)	176
BstAFI	CTTAAG	2 cut(s)	848, 878
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBI	TTCGAA	1 cut(s)	364
BstDEI	CTNAG	5 cut(s)	51, 81, 104, 504, 888
BstF5I	GGATG	1 cut(s)	633
BstKTI	GATC	3 cut(s)	66, 311, 318
BstMAI	GTCTC	2 cut(s)	21, 527
BstMBI	GATC	3 cut(s)	63, 308, 315
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 239, 286, 562, 918
BstNI	CCWGG	3 cut(s)	424, 658, 687
BstSCI	CCNGG	5 cut(s)	273, 422, 525, 656, 685
BstSFI	CTRYAG	2 cut(s)	237, 540
BstV1I	GCAGC	7 cut(s)	24, 58, 223, 245, 251, 340, 565
BstV2I	GAAGAC	1 cut(s)	443
Bsu15I	ATCGAT	2 cut(s)	307, 678
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	332
BsuTUI	ATCGAT	2 cut(s)	307, 678
BtsCI	GGATG	1 cut(s)	633
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	177, 208
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	331
ClaI	ATCGAT	2 cut(s)	307, 678
Csp6I	GTAC	4 cut(s)	55, 111, 614, 779
CviAII	CATG	5 cut(s)	121, 454, 460, 637, 943
CviQI	GTAC	4 cut(s)	55, 111, 614, 779
DdeI	CTNAG	5 cut(s)	51, 81, 104, 504, 888
DpnI	GATC	3 cut(s)	65, 310, 317
DpnII	GATC	3 cut(s)	63, 308, 315
DraIII	CACNNNGTG	1 cut(s)	446
Eam1104I	CTCTTC	2 cut(s)	291, 591
EarI	CTCTTC	2 cut(s)	291, 591
Eco31I	GGTCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	863
EcoRII	CCWGG	3 cut(s)	422, 656, 685
EcoT22I	ATGCAT	2 cut(s)	291, 465
FaeI	CATG	5 cut(s)	124, 457, 463, 640, 946
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	5 cut(s)	120, 453, 459, 636, 942
Fnu4HI	GCNGC	7 cut(s)	13, 72, 234, 237, 240, 354, 554
FokI	GGATG	1 cut(s)	640
Fsp4HI	GCNGC	7 cut(s)	13, 72, 234, 237, 240, 354, 554
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	7 cut(s)	13, 72, 234, 237, 240, 354, 554
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	3 cut(s)	230, 275, 526
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	5 cut(s)	124, 457, 463, 640, 946
HindIII	AAGCTT	3 cut(s)	101, 495, 577
HinfI	GANTC	4 cut(s)	265, 473, 536, 680
HpaII	CCGG	3 cut(s)	230, 275, 526
HphI	GGTGA	2 cut(s)	652, 675
Hpy166II	GTNNAC	2 cut(s)	449, 727
Hpy188I	TCNGA	5 cut(s)	162, 344, 411, 472, 600
Hpy188III	TCNNGA	5 cut(s)	61, 258, 293, 319, 865
Hpy8I	GTNNAC	2 cut(s)	449, 727
Hpy99I	CGWCG	2 cut(s)	181, 331
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	7 cut(s)	74, 239, 289, 356, 463, 542, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 239, 286, 562, 918
HpyF3I	CTNAG	5 cut(s)	51, 81, 104, 504, 888
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	5 cut(s)	124, 457, 463, 640, 946
Kzo9I	GATC	3 cut(s)	63, 308, 315
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	247, 277
Lsp1109I	GCAGC	7 cut(s)	24, 58, 223, 245, 251, 340, 565
LweI	GCATC	2 cut(s)	298, 472
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	3 cut(s)	138, 172, 869
MalI	GATC	3 cut(s)	65, 310, 317
MbiI	CCGCTC	1 cut(s)	625
MboI	GATC	3 cut(s)	63, 308, 315
MluCI	AATT	4 cut(s)	513, 649, 899, 937
MlyI	GAGTC	2 cut(s)	259, 467
MmeI	TCCRAC	3 cut(s)	141, 293, 367
MnlI	CCTC	8 cut(s)	90, 96, 255, 258, 369, 423, 664, 706
Mph1103I	ATGCAT	2 cut(s)	291, 465
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	2 cut(s)	849, 879
MslI	CAYNNNNRTG	3 cut(s)	201, 458, 756
MspA1I	CMGCKG	2 cut(s)	15, 236
MspCI	CTTAAG	2 cut(s)	848, 878
MspI	CCGG	3 cut(s)	230, 275, 526
MspR9I	CCNGG	5 cut(s)	275, 424, 527, 658, 687
MvaI	CCWGG	3 cut(s)	424, 658, 687
MwoI	GCNNNNNNNGC	5 cut(s)	198, 239, 286, 562, 918
NciI	CCSGG	2 cut(s)	275, 527
NdeII	GATC	3 cut(s)	63, 308, 315
NlaIII	CATG	5 cut(s)	124, 457, 463, 640, 946
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	172, 869
NsiI	ATGCAT	2 cut(s)	291, 465
NspV	TTCGAA	1 cut(s)	364
PaeR7I	CTCGAG	1 cut(s)	863
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	536, 680
PflMI	CCANNNNNTGG	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	7 cut(s)	14, 73, 235, 238, 241, 355, 555
PleI	GAGTC	2 cut(s)	259, 467
PpsI	GAGTC	2 cut(s)	259, 467
Psp6I	CCWGG	3 cut(s)	422, 656, 685
PspGI	CCWGG	3 cut(s)	422, 656, 685
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	331
PstI	CTGCAG	2 cut(s)	241, 544
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	4 cut(s)	56, 112, 615, 780
RsaNI	GTAC	4 cut(s)	55, 111, 614, 779
RseI	CAYNNNNRTG	3 cut(s)	201, 458, 756
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	849, 879
SatI	GCNGC	7 cut(s)	13, 72, 234, 237, 240, 354, 554
Sau3AI	GATC	3 cut(s)	63, 308, 315
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	2 cut(s)	56, 615
SchI	GAGTC	2 cut(s)	259, 467
ScrFI	CCNGG	5 cut(s)	275, 424, 527, 658, 687
SfaNI	GCATC	2 cut(s)	298, 472
SfcI	CTRYAG	2 cut(s)	237, 540
Sfr274I	CTCGAG	1 cut(s)	863
SfuI	TTCGAA	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	863
SmiMI	CAYNNNNRTG	3 cut(s)	201, 458, 756
SmlI	CTYRAG	3 cut(s)	848, 863, 878
SmoI	CTYRAG	3 cut(s)	848, 863, 878
Sse9I	AATT	4 cut(s)	513, 649, 899, 937
SsiI	CCGC	3 cut(s)	15, 415, 625
SspI	AATATT	2 cut(s)	799, 956
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	5 cut(s)	273, 422, 525, 656, 685
TaaI	ACNGT	1 cut(s)	773
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	7 cut(s)	62, 179, 250, 307, 364, 678, 864
TasI	AATT	4 cut(s)	513, 649, 899, 937
TatI	WGTACW	3 cut(s)	54, 110, 613
TfiI	GAWTC	2 cut(s)	536, 680
Tru1I	TTAA	2 cut(s)	849, 879
Tru9I	TTAA	2 cut(s)	849, 879
TscAI	CASTG	2 cut(s)	177, 208
TseFI	GTSAC	2 cut(s)	172, 869
TseI	GCWGC	7 cut(s)	12, 71, 233, 236, 239, 353, 553
Tsp45I	GTSAC	2 cut(s)	172, 869
TspDTI	ATGAA	2 cut(s)	737, 931
TspGWI	ACGGA	1 cut(s)	938
TspRI	CASTG	2 cut(s)	177, 208
Van91I	CCANNNNNTGG	1 cut(s)	163
Vha464I	CTTAAG	2 cut(s)	848, 878
XapI	RAATTY	1 cut(s)	937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XhoI	CTCGAG	1 cut(s)	863
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	39
ZraI	GACGTC	1 cut(s)	177
ZrmI	AGTACT	2 cut(s)	56, 615
Zsp2I	ATGCAT	2 cut(s)	291, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.