Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

23100367 .. 23111300

Gene Structure 10934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCATCAGGAAGAGCTGTATCGATCCGGGATCAAGACGCCATCGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATATATTCTACTGGTTTCAGAACCGCCGAGCCAGGGAGAGGCAGAAGACACGCCGTAAACTCATGTCGATGCATCAGTCCGACTCTAAACAACAACAACAACAAACTTTGACTAACAACACAATTAGCAGTCTCCGGGACAAAGAATCTGCAGGAGTTGACTTTGTTCGTTGTTTTGAAGTTGAGCAGCAGAATAGACTGACACTACCAAGCTTCACTCTTCTTACCGATCAGGAATCATCTTCAGTACTGCAAGAGAGGATGACGAGCATGGTGAAAAGCAATTCCTCCGGGCTACTCATGGAACATACCAATTCACCTGGACTGACCTCAAACACAAACATGTCAGCTACATTAAATTACAGAAAGCTCTTGGACTTTCATCACTATTATGATTACAATTACGGTATGGTATTGACTGCACCGAATATTTACAAAGAAGAAGAAGAAGAAAGCACAGAAACTCAAACTCTTAAGCTCTTTCCACTCGAGAGCGACAATCTTAAAGGTGCTAAGGATACCAAATTACCTATGAGCAGAACCACAAGCACAGACGCTACTTCAGATTTCATGGCAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

232

Amino Acids

26.91

Weight (kDa)

8.53

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	7 - 50	1.1e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	18, 38
AcuI	CTGAAG	2 cut(s)	333, 651
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	139, 144
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	2 cut(s)	98, 284
AjnI	CCWGG	2 cut(s)	137, 424
AluBI	AGCT	5 cut(s)	16, 318, 455, 475, 583
AluI	AGCT	5 cut(s)	16, 318, 455, 475, 583
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	18, 38
Ama87I	CYCGRG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	3 cut(s)	28, 242, 397
AsuHPI	GGTGA	3 cut(s)	76, 391, 414
AsuII	TTCGAA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	2 cut(s)	89, 144
BciT130I	CCWGG	2 cut(s)	139, 426
BciVI	GTATCC	1 cut(s)	616
BcnI	CCSGG	3 cut(s)	28, 242, 397
BcoDI	GTCTC	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	578
BfuI	GTATCC	1 cut(s)	616
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	5 cut(s)	28, 139, 242, 397, 426
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	5 cut(s)	28, 139, 242, 397, 426
BmsI	GCATC	3 cut(s)	13, 165, 187
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	79
BpuMI	CCSGG	3 cut(s)	28, 242, 397
Bsa29I	ATCGAT	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 144
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	139, 426
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	2 cut(s)	139, 144
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	2 cut(s)	54, 510
BshFI	GGCC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	27, 241, 396
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	139, 144
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	593
Bsp119I	TTCGAA	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	23, 30, 334
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	47
BspDI	ATCGAT	1 cut(s)	22
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	2 cut(s)	18, 38
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	23, 30, 334
BssNI	GRCGYC	1 cut(s)	38
Bst2UI	CCWGG	2 cut(s)	139, 426
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	2 cut(s)	6, 330
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	3 cut(s)	26, 33, 337
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	23, 30, 334
BstNI	CCWGG	2 cut(s)	139, 426
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	5 cut(s)	26, 137, 240, 395, 424
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	47
BsuTUI	ATCGAT	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	22
CseI	GACGC	2 cut(s)	46, 668
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	5 cut(s)	169, 376, 406, 448, 676
CviJI	RGCY	9 cut(s)	16, 47, 76, 137, 318, 400, 455, 475, 583
CviKI_1	RGCY	9 cut(s)	16, 47, 76, 137, 318, 400, 455, 475, 583
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	25, 32, 336
DpnII	GATC	3 cut(s)	23, 30, 334
Eam1104I	CTCTTC	2 cut(s)	6, 330
EarI	CTCTTC	2 cut(s)	6, 330
Eco57I	CTGAAG	2 cut(s)	333, 651
Eco88I	CYCGRG	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	137, 424
EcoT22I	ATGCAT	2 cut(s)	6, 180
FaeI	CATG	5 cut(s)	172, 379, 409, 451, 679
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	5 cut(s)	168, 375, 405, 447, 675
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	3 cut(s)	27, 241, 396
HgaI	GACGC	2 cut(s)	46, 668
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	5 cut(s)	172, 379, 409, 451, 679
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	3 cut(s)	188, 251, 341
HpaII	CCGG	3 cut(s)	27, 241, 396
HphI	GGTGA	3 cut(s)	76, 391, 414
Hpy166II	GTNNAC	2 cut(s)	164, 265
Hpy188I	TCNGA	4 cut(s)	59, 126, 187, 670
Hpy188III	TCNNGA	4 cut(s)	8, 34, 338, 595
Hpy8I	GTNNAC	2 cut(s)	164, 265
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	6 cut(s)	4, 71, 178, 257, 358, 527
HpyF3I	CTNAG	1 cut(s)	618
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	5 cut(s)	172, 379, 409, 451, 679
Kzo9I	GATC	3 cut(s)	23, 30, 334
LguI	GCTCTTC	1 cut(s)	6
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	3 cut(s)	13, 165, 187
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	25, 32, 336
MboI	GATC	3 cut(s)	23, 30, 334
MboII	GAAGA	8 cut(s)	23, 163, 317, 339, 557, 560, 563, 566
MluCI	AATT	6 cut(s)	228, 388, 418, 463, 505, 629
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	82, 210
MnlI	CCTC	5 cut(s)	84, 138, 357, 403, 445
Mph1103I	ATGCAT	2 cut(s)	6, 180
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	3 cut(s)	461, 579, 609
MslI	CAYNNNNRTG	3 cut(s)	173, 446, 495
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	3 cut(s)	27, 241, 396
MspR9I	CCNGG	5 cut(s)	28, 139, 242, 397, 426
MvaI	CCWGG	2 cut(s)	139, 426
NciI	CCSGG	3 cut(s)	28, 242, 397
NdeII	GATC	3 cut(s)	23, 30, 334
NlaIII	CATG	5 cut(s)	172, 379, 409, 451, 679
NmeAIII	GCCGAG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	2 cut(s)	6, 180
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	593
PciI	ACATGT	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	251, 341
PfoI	TCCNGGA	2 cut(s)	26, 240
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PscI	ACATGT	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	137, 424
PspGI	CCWGG	2 cut(s)	137, 424
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	3 cut(s)	173, 446, 495
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	461, 579, 609
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	23, 30, 334
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	5 cut(s)	28, 139, 242, 397, 426
SfaNI	GCATC	3 cut(s)	13, 165, 187
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	593
SfuI	TTCGAA	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	593
SmiMI	CAYNNNNRTG	3 cut(s)	173, 446, 495
SmlI	CTYRAG	2 cut(s)	578, 593
SmoI	CTYRAG	2 cut(s)	578, 593
Sse9I	AATT	6 cut(s)	228, 388, 418, 463, 505, 629
SsiI	CCGC	1 cut(s)	130
SspI	AATATT	2 cut(s)	535, 689
StyD4I	CCNGG	5 cut(s)	26, 137, 240, 395, 424
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	4 cut(s)	22, 79, 173, 594
TasI	AATT	6 cut(s)	228, 388, 418, 463, 505, 629
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	251, 341
Tru1I	TTAA	3 cut(s)	461, 579, 609
Tru9I	TTAA	3 cut(s)	461, 579, 609
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	476, 664
Vha464I	CTTAAG	1 cut(s)	578
XceI	RCATGY	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	110
ZrmI	AGTACT	1 cut(s)	354
Zsp2I	ATGCAT	2 cut(s)	6, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.