Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

62242927 .. 62244498

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACCCAAATCCCTTTGTTCCTCCATCAGATGGTTCCAGTGACGTCTGATGAGCAAGGCAGAAATAGCAGTGATTGTTTTCATAGTGATAAACAATCGGCAGCTACAGCTCCTCCGCGAAGTTCCCGATGGAATCCAACCCCGGAGCAGATAATGCACCTGGAGGAGCTCTATCGATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGTGAACTCATGTCCATGTATCAGTCTGACTCTAAACAACAAGAGCAACAAAATTTGACTAACAACACAATTAGCAGTCTCCACGACAAAGAATCTGCAGGAGGTGACTTTGTTCGTTGTCTTGAAGTTGAGCAGCAGAATAGGCGGACACTACCAAACTTAACTGTTCTTTCCGATCAGGAATCATCTTCAGTACTGCAAGAGAGGATGATGAGCATGGTGAAAAGCAATTCCTCCAAGCTACTTGTGGAACAATCCGATTCACCTGGATCGACCTCAGACACAAACGCGTCAGCTACAGTCATTTACACAAAGCTCTTGGACTTCCATCACTATTCTGATTATGATTATGGTATGGTATTGACTACACCCTGTATTTACAAAGAATTCAAAGAAGAAGAAGAAAGCAGAGAAACTCAAACTCTGGAGCTCTTTCCACTCGAGAGCGACAATCTTAAAGGTGCTAAGGATACTAAATTACCAATGAGCAGAACCACAAGCACAGGCACTACTTCAGATTTCATGGCAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

284

Amino Acids

32.73

Weight (kDa)

6.02

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	40 - 101	1.1e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	2 cut(s)	118, 602
AciI	CCGC	2 cut(s)	116, 457
AclWI	GGATC	2 cut(s)	191, 589
AcsI	RAATTY	2 cut(s)	364, 698
AcuI	CTGAAG	2 cut(s)	486, 810
AcyI	GRCGYC	2 cut(s)	44, 310
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	3 cut(s)	31, 292, 297
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	3 cut(s)	251, 437, 703
AjnI	CCWGG	3 cut(s)	159, 290, 577
AluBI	AGCT	7 cut(s)	104, 110, 169, 553, 608, 628, 742
AluI	AGCT	7 cut(s)	104, 110, 169, 553, 608, 628, 742
Alw21I	GWGCWC	2 cut(s)	171, 744
Alw26I	GTCTC	2 cut(s)	301, 395
AlwI	GGATC	2 cut(s)	191, 589
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	101, 445
ApoI	RAATTY	2 cut(s)	364, 698
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	4 cut(s)	229, 428, 544, 567
AsuII	TTCGAA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	752
BanII	GRGCYC	2 cut(s)	171, 744
Bbv12I	GWGCWC	2 cut(s)	171, 744
BbvI	GCAGC	2 cut(s)	113, 457
BccI	CCATC	4 cut(s)	25, 33, 123, 648
BceAI	ACGGC	3 cut(s)	213, 242, 297
BciT130I	CCWGG	3 cut(s)	161, 292, 579
BciVI	GTATCC	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	301, 395
BfmI	CTRYAG	3 cut(s)	105, 408, 609
BfuI	GTATCC	1 cut(s)	775
BisI	GCNGC	2 cut(s)	102, 446
BlsI	GCNGC	2 cut(s)	103, 447
BmcAI	AGTACT	1 cut(s)	507
Bme1390I	CCNGG	4 cut(s)	143, 161, 292, 579
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	4 cut(s)	143, 161, 292, 579
BpmI	CTGGAG	2 cut(s)	182, 758
Bpu10I	CCTNAGC	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	175
BsaHI	GRCGYC	2 cut(s)	44, 310
BsaJI	CCNNGG	2 cut(s)	141, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 292, 297
Bse1I	ACTGG	2 cut(s)	38, 275
BseBI	CCWGG	3 cut(s)	161, 292, 579
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	141, 291
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	31, 292, 297
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	2 cut(s)	38, 275
BseRI	GAGGAG	2 cut(s)	102, 179
BseXI	GCAGC	2 cut(s)	113, 457
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	118, 602
BshFI	GGCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	171, 744
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	31, 292, 297
BsmAI	GTCTC	2 cut(s)	301, 395
BsmBI	CGTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	752
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	171, 744
Bsp143I	GATC	4 cut(s)	176, 183, 487, 581
BspACI	CCGC	2 cut(s)	116, 457
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	602
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	118, 602
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	2 cut(s)	191, 589
BspT104I	TTCGAA	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	38, 275
BssECI	CCNNGG	2 cut(s)	141, 291
BssMI	GATC	4 cut(s)	176, 183, 487, 581
BssNI	GRCGYC	2 cut(s)	44, 310
Bst2UI	CCWGG	3 cut(s)	161, 292, 579
Bst4CI	ACNGT	2 cut(s)	478, 613
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	2 cut(s)	44, 310
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	589, 777
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	2 cut(s)	118, 602
BstKTI	GATC	4 cut(s)	179, 186, 490, 584
BstMAI	GTCTC	2 cut(s)	301, 395
BstMBI	GATC	4 cut(s)	176, 183, 487, 581
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 107, 154, 454
BstNI	CCWGG	3 cut(s)	161, 292, 579
BstSCI	CCNGG	4 cut(s)	141, 159, 290, 577
BstSFI	CTRYAG	3 cut(s)	105, 408, 609
BstUI	CGCG	2 cut(s)	118, 602
BstV1I	GCAGC	2 cut(s)	113, 457
Bsu15I	ATCGAT	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	45, 76
Cfr13I	GGNCC	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	175
CseI	GACGC	2 cut(s)	318, 591
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	4 cut(s)	322, 328, 529, 835
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	2 cut(s)	589, 777
DpnI	GATC	4 cut(s)	178, 185, 489, 583
DpnII	GATC	4 cut(s)	176, 183, 487, 581
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	472
Ecl136II	GAGCTC	2 cut(s)	169, 742
Eco24I	GRGCYC	2 cut(s)	171, 744
Eco53kI	GAGCTC	2 cut(s)	169, 742
Eco57I	CTGAAG	2 cut(s)	486, 810
Eco88I	CYCGRG	1 cut(s)	752
EcoICRI	GAGCTC	2 cut(s)	169, 742
EcoRI	GAATTC	1 cut(s)	698
EcoRII	CCWGG	3 cut(s)	159, 290, 577
EcoT38I	GRGCYC	2 cut(s)	171, 744
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	325, 331, 532, 838
FaiI	YATR	9 cut(s)	84, 240, 323, 329, 530, 657, 663, 668, 836
FatI	CATG	4 cut(s)	321, 327, 528, 834
Fnu4HI	GCNGC	2 cut(s)	102, 446
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	2 cut(s)	171, 744
Fsp4HI	GCNGC	2 cut(s)	102, 446
GluI	GCNGC	2 cut(s)	102, 446
GsuI	CTGGAG	2 cut(s)	182, 758
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	2 cut(s)	318, 591
Hin1I	GRCGYC	2 cut(s)	44, 310
Hin1II	CATG	4 cut(s)	325, 331, 532, 838
HinfI	GANTC	5 cut(s)	133, 341, 404, 494, 572
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	4 cut(s)	229, 428, 544, 567
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188III	TCNNGA	6 cut(s)	126, 187, 434, 491, 737, 754
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	478, 613
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	157, 224, 410, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 107, 154, 454
HpyF3I	CTNAG	2 cut(s)	589, 777
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	2 cut(s)	44, 310
Hsp92II	CATG	4 cut(s)	325, 331, 532, 838
Kzo9I	GATC	4 cut(s)	176, 183, 487, 581
LmnI	GCTCC	4 cut(s)	115, 145, 166, 739
Lsp1109I	GCAGC	2 cut(s)	113, 457
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	40, 217, 416
MalI	GATC	4 cut(s)	178, 185, 489, 583
MboI	GATC	4 cut(s)	176, 183, 487, 581
MboII	GAAGA	5 cut(s)	316, 492, 719, 722, 725
MhlI	GDGCHC	2 cut(s)	171, 744
MluCI	AATT	5 cut(s)	364, 381, 541, 698, 788
MluI	ACGCGT	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	161, 235
MnlI	CCTC	9 cut(s)	32, 123, 157, 237, 291, 407, 510, 556, 598
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	2 cut(s)	473, 768
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	4 cut(s)	143, 161, 292, 579
MvaI	CCWGG	3 cut(s)	161, 292, 579
MvnI	CGCG	2 cut(s)	118, 602
MwoI	GCNNNNNNNGC	4 cut(s)	66, 107, 154, 454
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	4 cut(s)	176, 183, 487, 581
NlaIII	CATG	4 cut(s)	325, 331, 532, 838
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	3 cut(s)	40, 217, 416
NspV	TTCGAA	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	133, 404, 494, 572
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	103, 447
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp124BI	GAGCTC	2 cut(s)	171, 744
Psp6I	CCWGG	3 cut(s)	159, 290, 577
PspGI	CCWGG	3 cut(s)	159, 290, 577
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	2 cut(s)	171, 744
SaqAI	TTAA	2 cut(s)	473, 768
SatI	GCNGC	2 cut(s)	102, 446
Sau3AI	GATC	4 cut(s)	176, 183, 487, 581
Sau96I	GGNCC	1 cut(s)	199
ScaI	AGTACT	1 cut(s)	507
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	4 cut(s)	143, 161, 292, 579
SduI	GDGCHC	2 cut(s)	171, 744
SfcI	CTRYAG	3 cut(s)	105, 408, 609
Sfr274I	CTCGAG	1 cut(s)	752
SfuI	TTCGAA	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	5 cut(s)	364, 381, 541, 698, 788
SsiI	CCGC	2 cut(s)	116, 457
SspI	AATATT	1 cut(s)	848
SstI	GAGCTC	2 cut(s)	171, 744
StyD4I	CCNGG	4 cut(s)	141, 159, 290, 577
TaaI	ACNGT	2 cut(s)	478, 613
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	175, 232, 584, 753
TasI	AATT	5 cut(s)	364, 381, 541, 698, 788
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	4 cut(s)	133, 404, 494, 572
Tru1I	TTAA	2 cut(s)	473, 768
Tru9I	TTAA	2 cut(s)	473, 768
TscAI	CASTG	2 cut(s)	45, 76
TseFI	GTSAC	3 cut(s)	40, 217, 416
TseI	GCWGC	2 cut(s)	101, 445
Tsp45I	GTSAC	3 cut(s)	40, 217, 416
TspDTI	ATGAA	2 cut(s)	71, 823
TspRI	CASTG	2 cut(s)	45, 76
Van91I	CCANNNNNTGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	364, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.