Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

62402957 .. 62404046

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG432200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCATCAGTCTGACACTAAACAACAGCAGCACACTTTGATTAACAGCAAGATTACCAGTCTCCAGAAAAAAGAATCTGCAGGAGTTAGCTCTGTTGGTCGTCTTGAAGTTGAGCAGCAAAATAGGCCGACCCTACCAAATTTCACTGTTCTTTCCGATCAGGAATCATCTTCAGTACTGCAAGAGAGAATGATGAGCATGGTGAAAAGCAATTCCTCCAGGCTACCTGTGGAACAATCCGATTCACCTGGACCGACCTCATCAGACACAAACGCGTCATCAGCTACATTAATTTACACAAAGCTCTTGGACTTTCATCACTATTATGATTATGACTACGGTATGGTATTGACCGCACCCAATATTTACAAAGAAGAAGAAAAAGAAAGCAGAGAAACTCAAACTCTAGAGCTCTTTCCACTAGAGAGCGACAATCTTAAGAGTGCTAAGGATACCAAATTACCTATGAGCAGAACAAGCACCGCAGATTTCAAGGAAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.31

Weight (kDa)

5.1

Isoelectric Point (pI)

65.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	354, 483
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	177
AflII	CTTAAG	1 cut(s)	437
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	107, 493
AjnI	CCWGG	2 cut(s)	218, 247
AluBI	AGCT	4 cut(s)	90, 284, 304, 412
AluI	AGCT	4 cut(s)	90, 284, 304, 412
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	28, 115
ApoI	RAATTY	1 cut(s)	139
AseI	ATTAAT	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	214, 237
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	40, 127
BciT130I	CCWGG	2 cut(s)	220, 249
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	407, 422
BfmI	CTRYAG	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	2 cut(s)	29, 116
BlsI	GCNGC	2 cut(s)	30, 117
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	220, 249
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	220, 249
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	2 cut(s)	47, 202
Bpu10I	CCTNAGC	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	220, 249
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	40, 127
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	414
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	354, 483
BspANI	GGCC	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	220, 249
Bst4CI	ACNGT	2 cut(s)	148, 341
BstAFI	CTTAAG	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 281, 477
BstNI	CCWGG	2 cut(s)	220, 249
BstSCI	CCNGG	2 cut(s)	218, 247
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	40, 127
BstV2I	GAAGAC	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	6 cut(s)	90, 127, 223, 284, 304, 412
CviKI_1	RGCY	6 cut(s)	90, 127, 223, 284, 304, 412
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	218, 247
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	1 cut(s)	202
FaiI	YATR	5 cut(s)	200, 327, 333, 344, 467
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	29, 116
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	29, 116
FspBI	CTAG	2 cut(s)	407, 422
GluI	GCNGC	2 cut(s)	29, 116
GsuI	CTGGAG	2 cut(s)	47, 202
HaeIII	GGCC	1 cut(s)	127
HgaI	GACGC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	3 cut(s)	74, 164, 242
HphI	GGTGA	2 cut(s)	214, 237
Hpy188I	TCNGA	4 cut(s)	13, 157, 241, 265
Hpy188III	TCNNGA	4 cut(s)	64, 104, 161, 407
HpyCH4III	ACNGT	2 cut(s)	148, 341
HpyCH4V	TGCA	3 cut(s)	4, 80, 181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 281, 477
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	9 cut(s)	66, 70, 77, 146, 205, 232, 234, 240, 261
Lsp1109I	GCAGC	2 cut(s)	40, 127
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	407, 422
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	4 cut(s)	162, 386, 389, 509
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	4 cut(s)	139, 211, 291, 458
MluI	ACGCGT	1 cut(s)	273
MnlI	CCTC	2 cut(s)	226, 268
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	42, 290, 438
MslI	CAYNNNNRTG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	220, 249
MvaI	CCWGG	2 cut(s)	220, 249
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	124, 281, 477
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	74, 164, 242
PkrI	GCNGC	2 cut(s)	30, 117
PshBI	ATTAAT	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	218, 247
PspGI	CCWGG	2 cut(s)	218, 247
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	42, 290, 438
SatI	GCNGC	2 cut(s)	29, 116
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	220, 249
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	8 cut(s)	92, 229, 250, 260, 286, 306, 414, 466
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	139, 211, 291, 458
SsiI	CCGC	2 cut(s)	354, 483
SspI	AATATT	2 cut(s)	364, 506
SspMI	CTAG	2 cut(s)	407, 422
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	218, 247
TaaI	ACNGT	2 cut(s)	148, 341
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	4 cut(s)	139, 211, 291, 458
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	3 cut(s)	74, 164, 242
Tru1I	TTAA	3 cut(s)	42, 290, 438
Tru9I	TTAA	3 cut(s)	42, 290, 438
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	2 cut(s)	28, 115
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	151
Vha464I	CTTAAG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	290
XapI	RAATTY	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	2 cut(s)	407, 422
ZrmI	AGTACT	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.