Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

55056638 .. 55057608

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG400200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCCAAGTATCAGTCTGACTCTAAACAACAACAACAACAACAAACTTTGACTAACACCACAATTAGCAGTCTCCCGGAGGACCCGGACAAAGAATCTGCAGGAGTTGACTTTGTTGGTCGTCTTGAAGTTGAGCAGCAGAATAAGCGGACACTACCAAAGTTCACTTTACTTTCTGATCAGGAATCATCTTCAGTACCGCAAGAGAGGATGATGAGCATGGTGAAAAGAAATTCCTCCAGGCAACTTGTGGAACAATCCGGTTCACCTGGACCGACCTCAGACACAAATGCGTCAGCTACATTAATTTACATAAAGCTCTTGGACTTTCATCACTATTACGATTACGATTACGGTATGATATTGGGATTCGGCTTCTCTGCTAGAATTCATTTTGCTAGGATCTGCTTGGATAACACTCTCAGCTCGCCACGTGTTACTGGTTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

5.88

Isoelectric Point (pI)

67.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	148, 200
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	232, 387
AcuI	CTGAAG	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	2 cut(s)	128, 447
AjnI	CCWGG	2 cut(s)	239, 268
AluBI	AGCT	3 cut(s)	299, 319, 426
AluI	AGCT	3 cut(s)	299, 319, 426
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	232, 387
AseI	ATTAAT	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	82, 272
AsuC2I	CCSGG	2 cut(s)	77, 86
AsuHPI	GGTGA	2 cut(s)	235, 258
AvaII	GGWCC	2 cut(s)	82, 272
BbrPI	CACGTG	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	241, 270
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	2 cut(s)	77, 86
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	384, 399
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	4 cut(s)	77, 86, 241, 270
Bme18I	GGWCC	2 cut(s)	82, 272
BmgT120I	GGNCC	2 cut(s)	82, 272
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	4 cut(s)	77, 86, 241, 270
BpmI	CTGGAG	1 cut(s)	223
BpuMI	CCSGG	2 cut(s)	77, 86
BsaAI	YACGTR	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	241, 270
BseGI	GGATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	294, 436
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	77, 86, 261
BsmAI	GTCTC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	178, 402
BspACI	CCGC	2 cut(s)	148, 200
BspCNI	CTCAG	2 cut(s)	293, 435
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	445
BssMI	GATC	2 cut(s)	178, 402
Bst2UI	CCWGG	2 cut(s)	241, 270
Bst4CI	ACNGT	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	280, 422
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	181, 405
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	178, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	241, 270
BstSCI	CCNGG	4 cut(s)	75, 84, 239, 268
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	82, 272
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	4 cut(s)	299, 319, 375, 426
CviKI_1	RGCY	4 cut(s)	299, 319, 375, 426
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	2 cut(s)	280, 422
DpnI	GATC	2 cut(s)	180, 404
DpnII	GATC	2 cut(s)	178, 402
Eco47I	GGWCC	2 cut(s)	82, 272
Eco57I	CTGAAG	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	239, 268
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	221, 314, 359
FatI	CATG	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	2 cut(s)	384, 399
GluI	GCNGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	223
HapII	CCGG	3 cut(s)	77, 86, 261
HgaI	GACGC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	4 cut(s)	20, 95, 185, 369
HpaII	CCGG	3 cut(s)	77, 86, 261
HphI	GGTGA	2 cut(s)	235, 258
Hpy166II	GTNNAC	3 cut(s)	109, 165, 266
Hpy188I	TCNGA	3 cut(s)	19, 178, 283
Hpy188III	TCNNGA	2 cut(s)	125, 182
Hpy8I	GTNNAC	3 cut(s)	109, 165, 266
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	280, 422
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	178, 402
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	384, 399
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	2 cut(s)	180, 404
MboI	GATC	2 cut(s)	178, 402
MboII	GAAGA	1 cut(s)	183
MflI	RGATCY	1 cut(s)	402
MluCI	AATT	4 cut(s)	63, 232, 306, 387
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	4 cut(s)	73, 201, 247, 289
MseI	TTAA	1 cut(s)	305
MspI	CCGG	3 cut(s)	77, 86, 261
MspR9I	CCNGG	4 cut(s)	77, 86, 241, 270
MvaI	CCWGG	2 cut(s)	241, 270
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	77, 86
NdeII	GATC	2 cut(s)	178, 402
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	95, 185, 369
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	82
PshBI	ATTAAT	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	239, 268
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	239, 268
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	82, 272
PspPPI	RGGWCCY	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	178, 402
Sau96I	GGNCC	2 cut(s)	82, 272
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	77, 86, 241, 270
SetI	ASST	6 cut(s)	271, 281, 301, 321, 428, 436
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	2 cut(s)	82, 272
Sse9I	AATT	4 cut(s)	63, 232, 306, 387
SsiI	CCGC	2 cut(s)	148, 200
SspMI	CTAG	2 cut(s)	384, 399
StyD4I	CCNGG	4 cut(s)	75, 84, 239, 268
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	436
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	4 cut(s)	63, 232, 306, 387
TfiI	GAWTC	3 cut(s)	95, 185, 369
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	320, 380
VpaK11BI	GGWCC	2 cut(s)	82, 272
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	2 cut(s)	232, 387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	2 cut(s)	384, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.