Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

46311963 .. 46312349

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGTACGTATGCAGTGGTTCCAGTGACGTCGAATGAGCAAGGCAGAAATAGCAGTGATTGTTCTTATAGTCATAATCGAAGTTCCCGATGGACTCCAACCCCGGAGCAGATAGTGCATCTGGAAGAGCTGTATCGATCTGGGATCAAGACGCCGACGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATATATTCTACTGGTTTCAGAACCGCCGAGCCAGGGAGAGGCAGAAGACACGCCGTGAACTCGTGTCCATGCATCAGTCCGACTCTAAACAACAACAACAACAAACTTTGACTAACAACACAATTAGCTGTCTCCGAGAAAAAGAATCTGCAGGAGGTATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

128

Amino Acids

14.93

Weight (kDa)

10.02

Isoelectric Point (pI)

79.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 88	3.5e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	32
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	29, 152
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	253, 258
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	2 cut(s)	130, 348
AluI	AGCT	2 cut(s)	130, 348
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	193
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	272
BccI	CCATC	1 cut(s)	84
BceAI	ACGGC	3 cut(s)	174, 203, 258
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	369
Bme1390I	CCNGG	2 cut(s)	104, 253
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	104, 253
BmsI	GCATC	2 cut(s)	127, 301
BpiI	GAAGAC	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	9
BsaHI	GRCGYC	2 cut(s)	29, 152
BsaJI	CCNNGG	2 cut(s)	102, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 258
Bse1I	ACTGG	2 cut(s)	23, 236
BseBI	CCWGG	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	102, 252
BseLI	CCNNNNNNNGG	2 cut(s)	253, 258
BseNI	ACTGG	2 cut(s)	23, 236
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	253, 258
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	137, 144
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	23, 236
BssECI	CCNNGG	2 cut(s)	102, 252
BssMI	GATC	2 cut(s)	137, 144
BssNI	GRCGYC	2 cut(s)	29, 152
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	2 cut(s)	29, 152
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	193
BstKTI	GATC	2 cut(s)	140, 147
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	2 cut(s)	137, 144
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 115
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	102, 251
BstSFI	CTRYAG	1 cut(s)	369
BstSNI	TACGTA	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	272
Bsu15I	ATCGAT	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	136
BtsI	GCAGTG	2 cut(s)	21, 61
BtsIMutI	CAGTG	3 cut(s)	21, 30, 61
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	136
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	5 cut(s)	130, 161, 190, 251, 348
CviKI_1	RGCY	5 cut(s)	130, 161, 190, 251, 348
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	2 cut(s)	139, 146
DpnII	GATC	2 cut(s)	137, 144
DraIII	CACNNNGTG	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	251
EcoT22I	ATGCAT	1 cut(s)	294
FaeI	CATG	1 cut(s)	292
FaiI	YATR	6 cut(s)	12, 69, 75, 201, 224, 290
FatI	CATG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	2 cut(s)	29, 152
Hin1II	CATG	1 cut(s)	292
HinfI	GANTC	3 cut(s)	94, 302, 365
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	6, 278
Hpy188I	TCNGA	4 cut(s)	173, 240, 301, 356
Hpy188III	TCNNGA	3 cut(s)	87, 122, 148
Hpy8I	GTNNAC	2 cut(s)	6, 278
Hpy99I	CGWCG	2 cut(s)	34, 160
HpyAV	CCTTC	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	8, 29
HpyCH4V	TGCA	5 cut(s)	14, 118, 185, 292, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 115
HpySE526I	ACGT	2 cut(s)	8, 29
Hsp92I	GRCGYC	2 cut(s)	29, 152
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	137, 144
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	9 cut(s)	36, 107, 117, 126, 161, 217, 238, 265, 357
LweI	GCATC	2 cut(s)	127, 301
MaeII	ACGT	2 cut(s)	8, 29
MaeIII	GTNAC	2 cut(s)	25, 178
MalI	GATC	2 cut(s)	139, 146
MboI	GATC	2 cut(s)	137, 144
MboII	GAAGA	2 cut(s)	137, 277
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	88, 296
MmeI	TCCRAC	3 cut(s)	122, 196, 324
MnlI	CCTC	3 cut(s)	198, 252, 368
Mph1103I	ATGCAT	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	1 cut(s)	385
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	104, 253
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	51, 115
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	137, 144
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	25, 178
NsiI	ATGCAT	1 cut(s)	294
NspV	TTCGAA	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	365
PleI	GAGTC	2 cut(s)	88, 296
PpsI	GAGTC	2 cut(s)	88, 296
Ppu21I	YACGTR	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	385
Sau3AI	GATC	2 cut(s)	137, 144
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	88, 296
ScrFI	CCNGG	2 cut(s)	104, 253
SetI	ASST	6 cut(s)	11, 32, 132, 180, 350, 379
SfaNI	GCATC	2 cut(s)	127, 301
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	193
SnaBI	TACGTA	1 cut(s)	9
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	2 cut(s)	102, 251
TaiI	ACGT	2 cut(s)	11, 32
TaqI	TCGA	4 cut(s)	32, 79, 136, 193
TasI	AATT	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	3 cut(s)	21, 30, 61
TseFI	GTSAC	2 cut(s)	25, 178
Tsp45I	GTSAC	2 cut(s)	25, 178
TspRI	CASTG	3 cut(s)	21, 30, 61
XmnI	GAANNNNTTC	1 cut(s)	224
ZraI	GACGTC	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.