Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

63363597 .. 63365590

Gene Structure 1994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACCCAAATCCCTTTCTTCCGCCATCAGATGGTTCCAGTGACGTTGGATGAGCAAGGCAGTGATTGTTTTTATAGTGATAAACAACCGGCAGCTGCAGCTCCTCCGCGAAATTCCCGATGGAATCCAACCCCGGAGCAGATAATGCACCTGGAGGAGCTCTATCGATCTGGGATCAAGACACCGACGACCCAACAAATCCGACAGGTGACTGCAGGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGTGAACTCATGTCCATGTATCAGTCTGACTCTAAACAACAACAACAACAAACTTTGACTAACAACACAATTAGCAGTCTCCACGACAAAGAATCTGCAGGAGGTGACTTTGTTCGTTGTCTTGAAGTTGAGCAGCAGAATAGGCGGACACTACCAAACTTAACTGTTCTTTCCGATCAGGAATCATCTACAGTACTGCAAGAGAGGATGATGAGCATGGTGAAAAGCAATTCCTCCAAGCTACTTGTGGAACAATCCGATTCACCTGGATCGACCTCAGACACAAACGCGTCAGCTACAGTCATTTACACAAAGCTCTTGGACTTCCATCACTATTATGATTATGGTATGGTATTGACTACACCCAGTATTTACAAAGAATTCAAAGAAGAAGAAGAAAGCAGAGAAACTCAAACTCTGGAGCTCTTTCCACTCGAGAGCGACAATCTTAAAGGTGCTAAGGATACCAAATTACCTATGAGCAGAACCGCAAGCACAGACACTACTTCAGATTTCATGGCAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

279

Amino Acids

32.25

Weight (kDa)

5.93

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	37 - 98	4.3e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	2 cut(s)	109, 593
AciI	CCGC	4 cut(s)	22, 107, 448, 792
AclWI	GGATC	2 cut(s)	182, 580
AcsI	RAATTY	2 cut(s)	112, 683
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	3 cut(s)	31, 283, 288
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	3 cut(s)	242, 428, 688
AjnI	CCWGG	3 cut(s)	150, 281, 568
AluBI	AGCT	7 cut(s)	95, 101, 160, 544, 599, 619, 727
AluI	AGCT	7 cut(s)	95, 101, 160, 544, 599, 619, 727
Alw21I	GWGCWC	2 cut(s)	162, 729
Alw26I	GTCTC	2 cut(s)	292, 386
AlwI	GGATC	2 cut(s)	182, 580
Ama87I	CYCGRG	1 cut(s)	737
ApeKI	GCWGC	4 cut(s)	92, 95, 98, 436
ApoI	RAATTY	2 cut(s)	112, 683
Asp700I	GAANNNNTTC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	220, 419, 535, 558
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	737
BanII	GRGCYC	2 cut(s)	162, 729
Bbv12I	GWGCWC	2 cut(s)	162, 729
BbvI	GCAGC	4 cut(s)	82, 104, 110, 448
BccI	CCATC	4 cut(s)	25, 33, 114, 639
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	3 cut(s)	152, 283, 570
BciVI	GTATCC	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	292, 386
BfmI	CTRYAG	5 cut(s)	96, 213, 399, 492, 600
BfuI	GTATCC	1 cut(s)	760
BisI	GCNGC	4 cut(s)	93, 96, 99, 437
BlsI	GCNGC	4 cut(s)	94, 97, 100, 438
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	4 cut(s)	134, 152, 283, 570
BmeT110I	CYCGRG	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	4 cut(s)	134, 152, 283, 570
BmrI	ACTGGG	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	663
BpmI	CTGGAG	2 cut(s)	173, 743
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu14I	TTCGAA	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	132, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 283, 288
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	3 cut(s)	38, 266, 669
BseBI	CCWGG	3 cut(s)	152, 283, 570
BseCI	ATCGAT	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	132, 282
BseGI	GGATG	2 cut(s)	55, 516
BseLI	CCNNNNNNNGG	3 cut(s)	31, 283, 288
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	3 cut(s)	38, 266, 669
BseRI	GAGGAG	2 cut(s)	93, 170
BseXI	GCAGC	4 cut(s)	82, 104, 110, 448
Bsh1236I	CGCG	2 cut(s)	109, 593
BshVI	ATCGAT	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	162, 729
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	2 cut(s)	89, 134
BslI	CCNNNNNNNGG	3 cut(s)	31, 283, 288
BsmAI	GTCTC	2 cut(s)	292, 386
BsmBI	CGTCTC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	737
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	162, 729
Bsp143I	GATC	4 cut(s)	167, 174, 478, 572
BspACI	CCGC	4 cut(s)	22, 107, 448, 792
BspCNI	CTCAG	1 cut(s)	593
BspDI	ATCGAT	1 cut(s)	166
BspFNI	CGCG	2 cut(s)	109, 593
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	3 cut(s)	100, 217, 403
BspPI	GGATC	2 cut(s)	182, 580
BspT104I	TTCGAA	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	38, 266, 669
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	132, 282
BssMI	GATC	4 cut(s)	167, 174, 478, 572
BssNI	GRCGYC	1 cut(s)	301
Bst2UI	CCWGG	3 cut(s)	152, 283, 570
Bst4CI	ACNGT	3 cut(s)	469, 496, 604
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	2 cut(s)	580, 762
BstF5I	GGATG	2 cut(s)	55, 516
BstFNI	CGCG	2 cut(s)	109, 593
BstKTI	GATC	4 cut(s)	170, 177, 481, 575
BstMAI	GTCTC	2 cut(s)	292, 386
BstMBI	GATC	4 cut(s)	167, 174, 478, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 145, 445
BstNI	CCWGG	3 cut(s)	152, 283, 570
BstSCI	CCNGG	4 cut(s)	132, 150, 281, 568
BstSFI	CTRYAG	5 cut(s)	96, 213, 399, 492, 600
BstUI	CGCG	2 cut(s)	109, 593
BstV1I	GCAGC	4 cut(s)	82, 104, 110, 448
Bsu15I	ATCGAT	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	760
BsuTUI	ATCGAT	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	55, 516
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	45, 67
Cac8I	GCNNGC	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	166
CseI	GACGC	2 cut(s)	309, 582
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	4 cut(s)	313, 319, 520, 820
CviJI	RGCY	9 cut(s)	95, 101, 160, 220, 281, 544, 599, 619, 727
CviKI_1	RGCY	9 cut(s)	95, 101, 160, 220, 281, 544, 599, 619, 727
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	2 cut(s)	580, 762
DpnI	GATC	4 cut(s)	169, 176, 480, 574
DpnII	GATC	4 cut(s)	167, 174, 478, 572
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	2 cut(s)	11, 463
Ecl136II	GAGCTC	2 cut(s)	160, 727
Eco24I	GRGCYC	2 cut(s)	162, 729
Eco53kI	GAGCTC	2 cut(s)	160, 727
Eco57I	CTGAAG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	737
EcoICRI	GAGCTC	2 cut(s)	160, 727
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	3 cut(s)	150, 281, 568
EcoT38I	GRGCYC	2 cut(s)	162, 729
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	4 cut(s)	316, 322, 523, 823
FatI	CATG	4 cut(s)	312, 318, 519, 819
Fnu4HI	GCNGC	4 cut(s)	93, 96, 99, 437
FokI	GGATG	2 cut(s)	62, 523
FriOI	GRGCYC	2 cut(s)	162, 729
Fsp4HI	GCNGC	4 cut(s)	93, 96, 99, 437
GluI	GCNGC	4 cut(s)	93, 96, 99, 437
GsuI	CTGGAG	2 cut(s)	173, 743
HapII	CCGG	2 cut(s)	89, 134
HgaI	GACGC	2 cut(s)	309, 582
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	4 cut(s)	316, 322, 523, 823
HinfI	GANTC	5 cut(s)	124, 332, 395, 485, 563
HpaII	CCGG	2 cut(s)	89, 134
HphI	GGTGA	4 cut(s)	220, 419, 535, 558
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	8 cut(s)	30, 203, 270, 331, 478, 562, 583, 814
Hpy188III	TCNNGA	6 cut(s)	117, 178, 425, 482, 722, 739
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	3 cut(s)	469, 496, 604
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	5 cut(s)	98, 148, 215, 401, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 145, 445
HpyF3I	CTNAG	2 cut(s)	580, 762
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	316, 322, 523, 823
Kzo9I	GATC	4 cut(s)	167, 174, 478, 572
LmnI	GCTCC	4 cut(s)	106, 136, 157, 724
Lsp1109I	GCAGC	4 cut(s)	82, 104, 110, 448
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	40, 208, 407
MalI	GATC	4 cut(s)	169, 176, 480, 574
MboI	GATC	4 cut(s)	167, 174, 478, 572
MboII	GAAGA	5 cut(s)	10, 307, 704, 707, 710
MhlI	GDGCHC	2 cut(s)	162, 729
MluCI	AATT	5 cut(s)	112, 372, 532, 683, 773
MluI	ACGCGT	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	3 cut(s)	27, 152, 226
MnlI	CCTC	8 cut(s)	114, 148, 228, 282, 398, 501, 547, 589
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	2 cut(s)	464, 753
MslI	CAYNNNNRTG	2 cut(s)	317, 639
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	89, 134
MspR9I	CCNGG	4 cut(s)	134, 152, 283, 570
MvaI	CCWGG	3 cut(s)	152, 283, 570
MvnI	CGCG	2 cut(s)	109, 593
MwoI	GCNNNNNNNGC	3 cut(s)	98, 145, 445
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	4 cut(s)	167, 174, 478, 572
NlaIII	CATG	4 cut(s)	316, 322, 523, 823
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	3 cut(s)	40, 208, 407
NspV	TTCGAA	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	737
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	4 cut(s)	124, 395, 485, 563
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	94, 97, 100, 438
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp124BI	GAGCTC	2 cut(s)	162, 729
Psp6I	CCWGG	3 cut(s)	150, 281, 568
PspGI	CCWGG	3 cut(s)	150, 281, 568
PspN4I	GGNNCC	1 cut(s)	36
PstI	CTGCAG	3 cut(s)	100, 217, 403
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	2 cut(s)	317, 639
SacI	GAGCTC	2 cut(s)	162, 729
SaqAI	TTAA	2 cut(s)	464, 753
SatI	GCNGC	4 cut(s)	93, 96, 99, 437
Sau3AI	GATC	4 cut(s)	167, 174, 478, 572
ScaI	AGTACT	1 cut(s)	498
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	4 cut(s)	134, 152, 283, 570
SduI	GDGCHC	2 cut(s)	162, 729
SfcI	CTRYAG	5 cut(s)	96, 213, 399, 492, 600
Sfr274I	CTCGAG	1 cut(s)	737
SfuI	TTCGAA	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	317, 639
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	5 cut(s)	112, 372, 532, 683, 773
SsiI	CCGC	4 cut(s)	22, 107, 448, 792
SspI	AATATT	1 cut(s)	833
SstI	GAGCTC	2 cut(s)	162, 729
StyD4I	CCNGG	4 cut(s)	132, 150, 281, 568
TaaI	ACNGT	3 cut(s)	469, 496, 604
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	166, 223, 575, 738
TasI	AATT	5 cut(s)	112, 372, 532, 683, 773
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	4 cut(s)	124, 395, 485, 563
Tru1I	TTAA	2 cut(s)	464, 753
Tru9I	TTAA	2 cut(s)	464, 753
TscAI	CASTG	2 cut(s)	45, 67
TseFI	GTSAC	3 cut(s)	40, 208, 407
TseI	GCWGC	4 cut(s)	92, 95, 98, 436
Tsp45I	GTSAC	3 cut(s)	40, 208, 407
TspDTI	ATGAA	1 cut(s)	808
TspRI	CASTG	2 cut(s)	45, 67
Van91I	CCANNNNNTGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	112, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.