Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

62217123 .. 62218570

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACCCAAATCCCTTTGTTCCTCCATCAGATGGTTCCAGTGAAGTCTGATGAGCAAGGCAGAAATAGCAGTGATTGTTTTTATAGTGATAAACAACCGGCAGCTGCAGCTCCTCCGCGAAGTTCCCGATGGAATCCAACCCCGGAGCAGATAATGCACCTGGAGGAGCTCTATCGATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGCGTTGAAGGAAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGCGAACTCATGTCCATGTATCAGTCTGACTCTAAACAACAACAACAAACTTTGACTAACACAACAATTAGCGGTCTCCCGGACAAAGAATCTGCAGGAGTTGACTTTGTTGGTCGTCTTGAAGTTGAGCAGCAGATTAAGCGGACACTACCAAAGTTCACTTTACTTTCTGATCAGGAATCATCTTCATTACCGCAAGAGAGGATGATGAGCGTGTTGAAAAGAAATTCCTCCAGGCAACTTGTGGAACAATCCGGTTCACCTGGACAGACCTCAGACACAAACGCTTCAGCTACATTAATTTACAAAAAGCTCTTGGACTTTCATCACTATTACGATTATGATTGCGGTATGATATTGACTACACCCAATATTTACAAAGACGAGCAAGAAGAAGAAAGTAGAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAGAGCGACAATCTCAAGGGTGCTAAGGATACGAAATTACACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

264

Amino Acids

30.48

Weight (kDa)

7.76

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	40 - 101	6.9e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	2 cut(s)	118, 315
AciI	CCGC	6 cut(s)	116, 313, 384, 454, 506, 660
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	1 cut(s)	310
AfiI	CCNNNNNNNGG	3 cut(s)	31, 292, 297
AgsI	TTSAA	3 cut(s)	251, 434, 532
AjnI	CCWGG	4 cut(s)	159, 290, 545, 574
AluBI	AGCT	6 cut(s)	104, 110, 169, 605, 625, 736
AluI	AGCT	6 cut(s)	104, 110, 169, 605, 625, 736
Alw21I	GWGCWC	2 cut(s)	171, 738
Alw26I	GTCTC	2 cut(s)	301, 392
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	4 cut(s)	101, 104, 107, 442
ApoI	RAATTY	1 cut(s)	538
AseI	ATTAAT	1 cut(s)	611
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	2 cut(s)	143, 392
AsuHPI	GGTGA	2 cut(s)	229, 564
AsuII	TTCGAA	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	171, 738
Bbv12I	GWGCWC	2 cut(s)	171, 738
BbvI	GCAGC	4 cut(s)	91, 113, 119, 454
BccI	CCATC	3 cut(s)	25, 33, 123
BceAI	ACGGC	2 cut(s)	213, 242
BciT130I	CCWGG	4 cut(s)	161, 292, 547, 576
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	2 cut(s)	143, 392
BcoDI	GTCTC	2 cut(s)	301, 392
BfmI	CTRYAG	2 cut(s)	105, 405
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	5 cut(s)	102, 105, 108, 313, 443
BlsI	GCNGC	5 cut(s)	103, 106, 109, 314, 444
Bme1390I	CCNGG	6 cut(s)	143, 161, 292, 392, 547, 576
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	6 cut(s)	143, 161, 292, 392, 547, 576
BpmI	CTGGAG	3 cut(s)	182, 529, 752
Bpu10I	CCTNAGC	1 cut(s)	771
Bpu14I	TTCGAA	1 cut(s)	232
BpuEI	CTTGAG	2 cut(s)	746, 767
BpuMI	CCSGG	2 cut(s)	143, 392
Bsa29I	ATCGAT	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	141, 291
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 292, 297
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	38, 275
BseBI	CCWGG	4 cut(s)	161, 292, 547, 576
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	141, 291
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	31, 292, 297
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	38, 275
BseRI	GAGGAG	2 cut(s)	102, 179
BseXI	GCAGC	4 cut(s)	91, 113, 119, 454
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	118, 315
BshFI	GGCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	171, 738
BsiSI	CCGG	4 cut(s)	98, 143, 392, 567
BslI	CCNNNNNNNGG	3 cut(s)	31, 292, 297
BsmAI	GTCTC	2 cut(s)	301, 392
BsmBI	CGTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	171, 738
Bsp143I	GATC	3 cut(s)	176, 183, 484
BspACI	CCGC	6 cut(s)	116, 313, 384, 454, 506, 660
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	599
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	118, 315
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	2 cut(s)	109, 409
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	38, 275
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	141, 291
BssMI	GATC	3 cut(s)	176, 183, 484
BssNI	GRCGYC	1 cut(s)	310
Bst2UI	CCWGG	4 cut(s)	161, 292, 547, 576
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	586, 771
BstF5I	GGATG	1 cut(s)	522
BstFNI	CGCG	2 cut(s)	118, 315
BstKTI	GATC	3 cut(s)	179, 186, 487
BstMAI	GTCTC	2 cut(s)	301, 392
BstMBI	GATC	3 cut(s)	176, 183, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 107, 154, 451
BstNI	CCWGG	4 cut(s)	161, 292, 547, 576
BstSCI	CCNGG	6 cut(s)	141, 159, 290, 390, 545, 574
BstSFI	CTRYAG	2 cut(s)	105, 405
BstUI	CGCG	2 cut(s)	118, 315
BstV1I	GCAGC	4 cut(s)	91, 113, 119, 454
Bsu15I	ATCGAT	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	522
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	45, 76
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	175
CseI	GACGC	1 cut(s)	318
CviAII	CATG	3 cut(s)	322, 328, 792
CviJI	RGCY	9 cut(s)	104, 110, 169, 200, 229, 290, 605, 625, 736
CviKI_1	RGCY	9 cut(s)	104, 110, 169, 200, 229, 290, 605, 625, 736
DdeI	CTNAG	2 cut(s)	586, 771
DpnI	GATC	3 cut(s)	178, 185, 486
DpnII	GATC	3 cut(s)	176, 183, 484
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Ecl136II	GAGCTC	2 cut(s)	169, 736
Eco24I	GRGCYC	2 cut(s)	171, 738
Eco31I	GGTCTC	1 cut(s)	392
Eco53kI	GAGCTC	2 cut(s)	169, 736
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	2 cut(s)	169, 736
EcoRII	CCWGG	4 cut(s)	159, 290, 545, 574
EcoT38I	GRGCYC	2 cut(s)	171, 738
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	3 cut(s)	325, 331, 795
FaiI	YATR	7 cut(s)	84, 240, 323, 329, 654, 665, 793
FatI	CATG	3 cut(s)	321, 327, 791
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	5 cut(s)	102, 105, 108, 313, 443
FokI	GGATG	1 cut(s)	529
FriOI	GRGCYC	2 cut(s)	171, 738
Fsp4HI	GCNGC	5 cut(s)	102, 105, 108, 313, 443
GluI	GCNGC	5 cut(s)	102, 105, 108, 313, 443
GsuI	CTGGAG	3 cut(s)	182, 529, 752
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	4 cut(s)	98, 143, 392, 567
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	325, 331, 795
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	4 cut(s)	133, 341, 401, 491
HpaII	CCGG	4 cut(s)	98, 143, 392, 567
HphI	GGTGA	2 cut(s)	229, 564
Hpy166II	GTNNAC	3 cut(s)	415, 471, 572
Hpy188I	TCNGA	7 cut(s)	30, 49, 212, 279, 340, 484, 589
Hpy188III	TCNNGA	5 cut(s)	126, 187, 431, 488, 731
Hpy8I	GTNNAC	3 cut(s)	415, 471, 572
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	107, 157, 224, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 107, 154, 451
HpyF3I	CTNAG	2 cut(s)	586, 771
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	3 cut(s)	325, 331, 795
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	176, 183, 484
LmnI	GCTCC	5 cut(s)	115, 145, 166, 243, 733
Lsp1109I	GCAGC	4 cut(s)	91, 113, 119, 454
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	178, 185, 486
MboI	GATC	3 cut(s)	176, 183, 484
MboII	GAAGA	4 cut(s)	316, 489, 716, 719
MhlI	GDGCHC	2 cut(s)	171, 738
MluCI	AATT	4 cut(s)	378, 538, 612, 782
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	161, 235
MnlI	CCTC	7 cut(s)	32, 123, 157, 291, 507, 553, 595
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	2 cut(s)	450, 611
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	4 cut(s)	98, 143, 392, 567
MspR9I	CCNGG	6 cut(s)	143, 161, 292, 392, 547, 576
MvaI	CCWGG	4 cut(s)	161, 292, 547, 576
MvnI	CGCG	2 cut(s)	118, 315
MwoI	GCNNNNNNNGC	4 cut(s)	66, 107, 154, 451
NciI	CCSGG	2 cut(s)	143, 392
NdeII	GATC	3 cut(s)	176, 183, 484
NlaIII	CATG	3 cut(s)	325, 331, 795
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	133, 401, 491
PflMI	CCANNNNNTGG	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	5 cut(s)	103, 106, 109, 314, 444
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	611
Psp124BI	GAGCTC	2 cut(s)	171, 738
Psp6I	CCWGG	4 cut(s)	159, 290, 545, 574
PspGI	CCWGG	4 cut(s)	159, 290, 545, 574
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	109, 409
PvuII	CAGCTG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	2 cut(s)	171, 738
SaqAI	TTAA	2 cut(s)	450, 611
SatI	GCNGC	5 cut(s)	102, 105, 108, 313, 443
Sau3AI	GATC	3 cut(s)	176, 183, 484
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	6 cut(s)	143, 161, 292, 392, 547, 576
SduI	GDGCHC	2 cut(s)	171, 738
SfcI	CTRYAG	2 cut(s)	105, 405
SfuI	TTCGAA	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	746, 761
SmoI	CTYRAG	2 cut(s)	746, 761
Sse9I	AATT	4 cut(s)	378, 538, 612, 782
SsiI	CCGC	6 cut(s)	116, 313, 384, 454, 506, 660
SspI	AATATT	1 cut(s)	685
SstI	GAGCTC	2 cut(s)	171, 738
StyD4I	CCNGG	6 cut(s)	141, 159, 290, 390, 545, 574
TaqI	TCGA	2 cut(s)	175, 232
TasI	AATT	4 cut(s)	378, 538, 612, 782
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	133, 401, 491
Tru1I	TTAA	2 cut(s)	450, 611
Tru9I	TTAA	2 cut(s)	450, 611
TscAI	CASTG	2 cut(s)	45, 76
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	101, 104, 107, 442
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	489, 626
TspRI	CASTG	2 cut(s)	45, 76
Van91I	CCANNNNNTGG	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	611
XapI	RAATTY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.