Rh4AG385900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001847
Physical Location & Seq
Reverse (-)
69238176 .. 69239286
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG385900.1

Sequence Viewer

Length: 528 bp
ATGTCCATGTATCAGTCTGACTCTAAACAACAACAACAACAAACTTTGACTAACAACACAATTAGCAGTCTCCACGACAAAGAATCTGCAGGAGGTGACTTTGTTCGTTGTCTTGAAGTTGAGCAGCAGAATAGGCGGACACTACCAAACTTAACTGTTCTTTCCGATCAGGAATCATCTACAGTACTGCAAGAGAGGATGATGAGCATGGTGAAAAGCAATTCCTCCAAGCTACTTGTGGAACAATCCGATTCACCTGGATCGACCTCAGACACAAACGCGTCAGCTACAGTCATTTACACAAAGCTCTTGGACTTCCATCACTATTATGATTATGGTATGGTATTGACTACACCCAGTATTTACAAAGAATTCAAAGAAGAAGAAGAAAGCAGAGAAACTCAAACTCTGGAGCTCTTTCCACTCGAGAGCGACAATCTTAAAGGTGCTAAGGATACCAAATTACCTATGAGCAGAACCGCAAGCACAGACACTACTTCAGATTTCATGGCAGACCAATATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.87

Weight (kDa)

4.65

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 281
AciI CCGC 2 cut(s) 136, 480
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 2 cut(s) 116, 376
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 4 cut(s) 232, 287, 307, 415
AluI AGCT 4 cut(s) 232, 287, 307, 415
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 107, 223, 246
AvaI CYCGRG 1 cut(s) 425
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 258
BciVI GTATCC 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 74
BfmI CTRYAG 3 cut(s) 87, 180, 288
BfuI GTATCC 1 cut(s) 448
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 431
Bpu10I CCTNAGC 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 2 cut(s) 166, 260
BspACI CCGC 2 cut(s) 136, 480
BspCNI CTCAG 1 cut(s) 281
BspFNI CGCG 1 cut(s) 281
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 357
BssMI GATC 2 cut(s) 166, 260
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 3 cut(s) 157, 184, 292
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 2 cut(s) 268, 450
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 2 cut(s) 169, 263
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 166, 260
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 3 cut(s) 87, 180, 288
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 136
BsuI GTATCC 1 cut(s) 448
BtsCI GGATG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 484
CseI GACGC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 185
CviAII CATG 3 cut(s) 7, 208, 508
CviJI RGCY 4 cut(s) 232, 287, 307, 415
CviKI_1 RGCY 4 cut(s) 232, 287, 307, 415
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 268, 450
DpnI GATC 2 cut(s) 168, 262
DpnII GATC 2 cut(s) 166, 260
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 417
FaeI CATG 3 cut(s) 10, 211, 511
FaiI YATR 7 cut(s) 8, 209, 330, 336, 341, 470, 509
FatI CATG 3 cut(s) 6, 207, 507
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 431
HgaI GACGC 1 cut(s) 270
Hin1II CATG 3 cut(s) 10, 211, 511
HinfI GANTC 4 cut(s) 20, 83, 173, 251
HphI GGTGA 3 cut(s) 107, 223, 246
Hpy188I TCNGA 5 cut(s) 19, 166, 250, 271, 502
Hpy188III TCNNGA 4 cut(s) 113, 170, 410, 427
HpyCH4III ACNGT 3 cut(s) 157, 184, 292
HpyCH4V TGCA 2 cut(s) 89, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 268, 450
Hsp92II CATG 3 cut(s) 10, 211, 511
Kzo9I GATC 2 cut(s) 166, 260
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 6 cut(s) 75, 155, 243, 270, 370, 395
Lsp1109I GCAGC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 168, 262
MboI GATC 2 cut(s) 166, 260
MboII GAAGA 3 cut(s) 392, 395, 398
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 4 cut(s) 60, 220, 371, 461
MluI ACGCGT 1 cut(s) 279
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 4 cut(s) 86, 189, 235, 277
MseI TTAA 2 cut(s) 152, 441
MslI CAYNNNNRTG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 2 cut(s) 166, 260
NlaIII CATG 3 cut(s) 10, 211, 511
NmuCI GTSAC 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 425
PfeI GAWTC 3 cut(s) 83, 173, 251
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PstI CTGCAG 1 cut(s) 91
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 327
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 152, 441
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 166, 260
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 417
SetI ASST 9 cut(s) 97, 234, 259, 269, 289, 309, 417, 448, 469
SfcI CTRYAG 3 cut(s) 87, 180, 288
Sfr274I CTCGAG 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 4 cut(s) 60, 220, 371, 461
SsiI CCGC 2 cut(s) 136, 480
SspI AATATT 1 cut(s) 521
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 3 cut(s) 157, 184, 292
TaqI TCGA 2 cut(s) 263, 426
TasI AATT 4 cut(s) 60, 220, 371, 461
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 3 cut(s) 83, 173, 251
Tru1I TTAA 2 cut(s) 152, 441
Tru9I TTAA 2 cut(s) 152, 441
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 496
XapI RAATTY 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 425
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.