Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

63312618 .. 63314593

Gene Structure 1976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTATGCAGTGGTTCCAGTGACGTCTGATGAGCAAGGCAGAAATAGCAGTGATTGTTTTTATAGTGATAAACAACCGGCAGCTGCAGCCCCTCCGCGAAGTTCCCGATGGAATCCAATCCCGGAGCAGATAATGCACCTGGAGGAGCTCTATCGATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGTGCCAGGGAGAGGCAGAAGAGACGCCGTGAACTCATGTCCATGTATCAGTCTGACTCACAACAACAACAACAAACTTTGACTAACACCACAATTAGCGGTCTCCCGGACAAAGAATCTGCAGGAGTTGACTTTGTTGGTCGTCTTGAAGTTGAGCAGCAAAATAAGCGGACACTACCAAAGTTTACTTTACCTTCTGATCAGGAATCATCTTCAGTACCGCGAGAGAGGATGATGAGCATGGTGAAAAGAAATTCCTCCAGGCAACTTGTGGAACAATCCGGTTCACCTGGACCGACCTCAGACACAAACTGGTCAGATACATTAATTTACAAAAAGCCCTTGGACTTTCATCACTATTACGATTATGATTACGGTATGATATTGACTACACCCAATATTTACAAAGACGAGCAAGAAGAAGAAAGTAGAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAGAGTGACAATCTCAAGGGTGCTAAGGATACGAAATTACACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

257

Amino Acids

29.87

Weight (kDa)

6.98

Isoelectric Point (pI)

74.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	33 - 94	2.2e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccII	CGCG	2 cut(s)	97, 487
AciI	CCGC	4 cut(s)	95, 363, 433, 485
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	2 cut(s)	23, 289
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	271, 276
AgsI	TTSAA	2 cut(s)	230, 413
AjnI	CCWGG	4 cut(s)	138, 269, 524, 553
AluBI	AGCT	3 cut(s)	83, 148, 715
AluI	AGCT	3 cut(s)	83, 148, 715
Alw21I	GWGCWC	2 cut(s)	150, 717
Alw26I	GTCTC	2 cut(s)	280, 371
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	80, 83, 86, 421
ApoI	RAATTY	1 cut(s)	517
AseI	ATTAAT	1 cut(s)	590
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	178, 557
AsuC2I	CCSGG	2 cut(s)	122, 371
AsuHPI	GGTGA	3 cut(s)	208, 520, 543
AsuII	TTCGAA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	557
BanII	GRGCYC	2 cut(s)	150, 717
Bbv12I	GWGCWC	2 cut(s)	150, 717
BbvI	GCAGC	4 cut(s)	70, 92, 98, 433
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	3 cut(s)	192, 221, 276
BciT130I	CCWGG	4 cut(s)	140, 271, 526, 555
BciVI	GTATCC	1 cut(s)	748
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	2 cut(s)	122, 371
BcoDI	GTCTC	2 cut(s)	280, 371
BfmI	CTRYAG	2 cut(s)	84, 384
BfuI	GTATCC	1 cut(s)	748
BisI	GCNGC	4 cut(s)	81, 84, 87, 422
BlsI	GCNGC	4 cut(s)	82, 85, 88, 423
Bme1390I	CCNGG	6 cut(s)	122, 140, 271, 371, 526, 555
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	178, 557
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	6 cut(s)	122, 140, 271, 371, 526, 555
BpmI	CTGGAG	3 cut(s)	161, 508, 731
Bpu10I	CCTNAGC	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	2 cut(s)	725, 746
BpuMI	CCSGG	2 cut(s)	122, 371
Bsa29I	ATCGAT	1 cut(s)	154
BsaHI	GRCGYC	2 cut(s)	23, 289
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	270, 606
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 276
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	17, 254, 581
BseBI	CCWGG	4 cut(s)	140, 271, 526, 555
BseCI	ATCGAT	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	270, 606
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	271, 276
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	3 cut(s)	17, 254, 581
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	70, 92, 98, 433
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	2 cut(s)	97, 487
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	150, 717
BsiSI	CCGG	4 cut(s)	77, 122, 371, 546
BslI	CCNNNNNNNGG	2 cut(s)	271, 276
BsmAI	GTCTC	2 cut(s)	280, 371
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	150, 717
Bsp143I	GATC	3 cut(s)	155, 162, 463
BspACI	CCGC	4 cut(s)	95, 363, 433, 485
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	578
BspDI	ATCGAT	1 cut(s)	154
BspFNI	CGCG	2 cut(s)	97, 487
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	2 cut(s)	88, 388
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	17, 254, 581
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	270, 606
BssMI	GATC	3 cut(s)	155, 162, 463
BssNI	GRCGYC	2 cut(s)	23, 289
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	4 cut(s)	140, 271, 526, 555
Bst4CI	ACNGT	2 cut(s)	266, 641
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	2 cut(s)	23, 289
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	565, 750
BstF5I	GGATG	1 cut(s)	501
BstFNI	CGCG	2 cut(s)	97, 487
BstKTI	GATC	3 cut(s)	158, 165, 466
BstMAI	GTCTC	2 cut(s)	280, 371
BstMBI	GATC	3 cut(s)	155, 162, 463
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 86, 133, 430
BstNI	CCWGG	4 cut(s)	140, 271, 526, 555
BstSCI	CCNGG	6 cut(s)	120, 138, 269, 369, 524, 553
BstSFI	CTRYAG	2 cut(s)	84, 384
BstUI	CGCG	2 cut(s)	97, 487
BstV1I	GCAGC	4 cut(s)	70, 92, 98, 433
Bsu15I	ATCGAT	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	748
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	501
BtsI	GCAGTG	2 cut(s)	15, 55
BtsIMutI	CAGTG	3 cut(s)	15, 24, 55
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	178, 557
ClaI	ATCGAT	1 cut(s)	154
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	3 cut(s)	301, 307, 505
CviJI	RGCY	7 cut(s)	83, 89, 148, 179, 208, 604, 715
CviKI_1	RGCY	7 cut(s)	83, 89, 148, 179, 208, 604, 715
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	2 cut(s)	565, 750
DpnI	GATC	3 cut(s)	157, 164, 465
DpnII	GATC	3 cut(s)	155, 162, 463
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Ecl136II	GAGCTC	2 cut(s)	148, 715
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	150, 717
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	557
Eco53kI	GAGCTC	2 cut(s)	148, 715
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	2 cut(s)	148, 715
EcoRII	CCWGG	4 cut(s)	138, 269, 524, 553
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	150, 717
ErhI	CCWWGG	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	3 cut(s)	304, 310, 508
FaiI	YATR	9 cut(s)	6, 63, 219, 302, 308, 506, 633, 644, 772
FatI	CATG	3 cut(s)	300, 306, 504
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	81, 84, 87, 422
FokI	GGATG	1 cut(s)	508
FriOI	GRGCYC	2 cut(s)	150, 717
Fsp4HI	GCNGC	4 cut(s)	81, 84, 87, 422
GluI	GCNGC	4 cut(s)	81, 84, 87, 422
GsuI	CTGGAG	3 cut(s)	161, 508, 731
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	4 cut(s)	77, 122, 371, 546
HgaI	GACGC	1 cut(s)	297
Hin1I	GRCGYC	2 cut(s)	23, 289
Hin1II	CATG	3 cut(s)	304, 310, 508
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	112, 320, 380, 470
HpaII	CCGG	4 cut(s)	77, 122, 371, 546
HphI	GGTGA	3 cut(s)	208, 520, 543
Hpy166II	GTNNAC	4 cut(s)	296, 394, 450, 551
Hpy188I	TCNGA	7 cut(s)	28, 191, 258, 319, 463, 568, 583
Hpy188III	TCNNGA	5 cut(s)	105, 166, 410, 467, 710
Hpy8I	GTNNAC	4 cut(s)	296, 394, 450, 551
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	224, 468
HpyCH4III	ACNGT	2 cut(s)	266, 641
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	8, 86, 136, 203, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 86, 133, 430
HpyF3I	CTNAG	2 cut(s)	565, 750
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	23, 289
Hsp92II	CATG	3 cut(s)	304, 310, 508
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	155, 162, 463
LmnI	GCTCC	3 cut(s)	124, 145, 712
Lsp1109I	GCAGC	4 cut(s)	70, 92, 98, 433
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	19, 196, 731
MalI	GATC	3 cut(s)	157, 164, 465
MboI	GATC	3 cut(s)	155, 162, 463
MboII	GAAGA	4 cut(s)	295, 468, 695, 698
MhlI	GDGCHC	2 cut(s)	150, 717
MluCI	AATT	4 cut(s)	357, 517, 591, 761
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	102, 136, 216, 270, 486, 532, 574
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	4 cut(s)	77, 122, 371, 546
MspR9I	CCNGG	6 cut(s)	122, 140, 271, 371, 526, 555
MvaI	CCWGG	4 cut(s)	140, 271, 526, 555
MvnI	CGCG	2 cut(s)	97, 487
MwoI	GCNNNNNNNGC	4 cut(s)	45, 86, 133, 430
NciI	CCSGG	2 cut(s)	122, 371
NdeII	GATC	3 cut(s)	155, 162, 463
NlaIII	CATG	3 cut(s)	304, 310, 508
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	3 cut(s)	19, 196, 731
NspV	TTCGAA	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	112, 380, 470
PfoI	TCCNGGA	2 cut(s)	120, 369
PkrI	GCNGC	4 cut(s)	82, 85, 88, 423
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	590
Psp124BI	GAGCTC	2 cut(s)	150, 717
Psp6I	CCWGG	4 cut(s)	138, 269, 524, 553
PspGI	CCWGG	4 cut(s)	138, 269, 524, 553
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	178, 557
PstI	CTGCAG	2 cut(s)	88, 388
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	2 cut(s)	150, 717
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	4 cut(s)	81, 84, 87, 422
Sau3AI	GATC	3 cut(s)	155, 162, 463
Sau96I	GGNCC	2 cut(s)	178, 557
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	6 cut(s)	122, 140, 271, 371, 526, 555
SduI	GDGCHC	2 cut(s)	150, 717
SfcI	CTRYAG	2 cut(s)	84, 384
SfuI	TTCGAA	1 cut(s)	211
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	725, 740
SmoI	CTYRAG	2 cut(s)	725, 740
Sse9I	AATT	4 cut(s)	357, 517, 591, 761
SsiI	CCGC	4 cut(s)	95, 363, 433, 485
SspI	AATATT	1 cut(s)	664
SstI	GAGCTC	2 cut(s)	150, 717
StyD4I	CCNGG	6 cut(s)	120, 138, 269, 369, 524, 553
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	266, 641
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	154, 211
TaqII	GACCGA	1 cut(s)	574
TasI	AATT	4 cut(s)	357, 517, 591, 761
TfiI	GAWTC	3 cut(s)	112, 380, 470
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TscAI	CASTG	3 cut(s)	15, 24, 55
TseFI	GTSAC	3 cut(s)	19, 196, 731
TseI	GCWGC	4 cut(s)	80, 83, 86, 421
Tsp45I	GTSAC	3 cut(s)	19, 196, 731
TspDTI	ATGAA	1 cut(s)	605
TspRI	CASTG	3 cut(s)	15, 24, 55
VpaK11BI	GGWCC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	590
XapI	RAATTY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	242
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.