Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000353.1

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

122283 .. 123671

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000353.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgtatgcagtggttccagtgacgtttgatgagcaaggcagtgattgtttttatagtgataaacaaccggcagctgcagctcctccgcgaagttcccgatggaatccaaccccggagcagataatgcacctggaggagctctatcgatctgggatcaagacaccgacgacccaacaaatccggcaggtgactgcagggcttcgaaactatgggagggttgaaggcaagaatgtattctactggtttcagaaccaccgagccagggagaggcagaagagacgccgtgaactcatgtccatgtatcagtctgactctaaacaacaacaacaacaacaaactttgactaacaacacaattagcagtctccacgacaaagaatctgcaggaggtgactttgttcgttgtcttgaagttgagcagcagaataggcggacagtaccaaacttaactgttctttccgatcaggaatcatcttcagtactgcaagagaggatgatgagcatggtgaaaagcaattcctccaagctacttgtggagcaatccgattcacctggatcgacctcagacacaaacgcgtcagctacagtcatttacacaaagctcttggacttgcatcactattatgattatggtatggtattgactacacccagtatttacaaagaattcaaagaagaagaagaaagcagagaaactaaaactctggagctctttccactcgagagcgacaatcttaaaggtgctaaggataccaaattacctatgagcagaaccgcaagcacaaacactacttcagatttcatggcagaccaatattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

273

Amino Acids

31.37

Weight (kDa)

6.02

Isoelectric Point (pI)

70.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccII	CGCG	2 cut(s)	88, 575
AciI	CCGC	3 cut(s)	86, 430, 774
AclWI	GGATC	2 cut(s)	161, 562
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	2 cut(s)	459, 777
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	2 cut(s)	438, 480
AfiI	CCNNNNNNNGG	2 cut(s)	262, 267
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	221, 410, 670
AjnI	CCWGG	3 cut(s)	129, 260, 550
AluBI	AGCT	7 cut(s)	74, 80, 139, 526, 581, 601, 709
AluI	AGCT	7 cut(s)	74, 80, 139, 526, 581, 601, 709
Alw21I	GWGCWC	2 cut(s)	141, 711
Alw26I	GTCTC	2 cut(s)	271, 368
AlwI	GGATC	2 cut(s)	161, 562
Ama87I	CYCGRG	1 cut(s)	719
ApeKI	GCWGC	4 cut(s)	71, 74, 77, 418
ApoI	RAATTY	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	4 cut(s)	199, 401, 517, 540
AsuII	TTCGAA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	719
BanII	GRGCYC	2 cut(s)	141, 711
Bbv12I	GWGCWC	2 cut(s)	141, 711
BbvI	GCAGC	4 cut(s)	61, 83, 89, 430
BccI	CCATC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	3 cut(s)	131, 262, 552
BciVI	GTATCC	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	271, 368
BfmI	CTRYAG	4 cut(s)	75, 192, 381, 582
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	742
BisI	GCNGC	4 cut(s)	72, 75, 78, 419
BlsI	GCNGC	4 cut(s)	73, 76, 79, 420
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	4 cut(s)	113, 131, 262, 552
BmeT110I	CYCGRG	1 cut(s)	719
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	4 cut(s)	113, 131, 262, 552
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	622
BmuI	ACTGGG	1 cut(s)	645
BpmI	CTGGAG	2 cut(s)	152, 725
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu14I	TTCGAA	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	111, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 267
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	3 cut(s)	17, 245, 651
BseBI	CCWGG	3 cut(s)	131, 262, 552
BseCI	ATCGAT	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	111, 261
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	262, 267
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	17, 245, 651
BseRI	GAGGAG	2 cut(s)	72, 149
BseXI	GCAGC	4 cut(s)	61, 83, 89, 430
Bsh1236I	CGCG	2 cut(s)	88, 575
BshVI	ATCGAT	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	141, 711
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	3 cut(s)	68, 113, 181
BslI	CCNNNNNNNGG	2 cut(s)	262, 267
BsmAI	GTCTC	2 cut(s)	271, 368
BsmBI	CGTCTC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	719
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	141, 711
Bsp143I	GATC	4 cut(s)	146, 153, 460, 554
BspACI	CCGC	3 cut(s)	86, 430, 774
BspCNI	CTCAG	1 cut(s)	575
BspDI	ATCGAT	1 cut(s)	145
BspFNI	CGCG	2 cut(s)	88, 575
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	3 cut(s)	79, 196, 385
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	161, 562
BspT104I	TTCGAA	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	3 cut(s)	17, 245, 651
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	111, 261
BssMI	GATC	4 cut(s)	146, 153, 460, 554
BssNI	GRCGYC	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	131, 262, 552
Bst4CI	ACNGT	3 cut(s)	436, 451, 586
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	2 cut(s)	562, 744
BstF5I	GGATG	1 cut(s)	498
BstFNI	CGCG	2 cut(s)	88, 575
BstKTI	GATC	4 cut(s)	149, 156, 463, 557
BstMAI	GTCTC	2 cut(s)	271, 368
BstMBI	GATC	4 cut(s)	146, 153, 460, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 124, 427
BstNI	CCWGG	3 cut(s)	131, 262, 552
BstSCI	CCNGG	4 cut(s)	111, 129, 260, 550
BstSFI	CTRYAG	4 cut(s)	75, 192, 381, 582
BstUI	CGCG	2 cut(s)	88, 575
BstV1I	GCAGC	4 cut(s)	61, 83, 89, 430
Bsu15I	ATCGAT	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	742
BsuTUI	ATCGAT	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	498
BtsI	GCAGTG	2 cut(s)	15, 46
BtsIMutI	CAGTG	3 cut(s)	15, 24, 46
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	145
CseI	GACGC	2 cut(s)	288, 564
Csp6I	GTAC	2 cut(s)	437, 479
CviAII	CATG	4 cut(s)	292, 298, 502, 802
CviJI	RGCY	9 cut(s)	74, 80, 139, 199, 260, 526, 581, 601, 709
CviKI_1	RGCY	9 cut(s)	74, 80, 139, 199, 260, 526, 581, 601, 709
CviQI	GTAC	2 cut(s)	437, 479
DdeI	CTNAG	2 cut(s)	562, 744
DpnI	GATC	4 cut(s)	148, 155, 462, 556
DpnII	GATC	4 cut(s)	146, 153, 460, 554
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	445
Ecl136II	GAGCTC	2 cut(s)	139, 709
Eco24I	GRGCYC	2 cut(s)	141, 711
Eco53kI	GAGCTC	2 cut(s)	139, 709
Eco57I	CTGAAG	2 cut(s)	459, 777
Eco88I	CYCGRG	1 cut(s)	719
EcoICRI	GAGCTC	2 cut(s)	139, 709
EcoRI	GAATTC	1 cut(s)	665
EcoRII	CCWGG	3 cut(s)	129, 260, 550
EcoT38I	GRGCYC	2 cut(s)	141, 711
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	4 cut(s)	295, 301, 505, 805
FatI	CATG	4 cut(s)	291, 297, 501, 801
Fnu4HI	GCNGC	4 cut(s)	72, 75, 78, 419
FokI	GGATG	1 cut(s)	505
FriOI	GRGCYC	2 cut(s)	141, 711
Fsp4HI	GCNGC	4 cut(s)	72, 75, 78, 419
GluI	GCNGC	4 cut(s)	72, 75, 78, 419
GsuI	CTGGAG	2 cut(s)	152, 725
HapII	CCGG	3 cut(s)	68, 113, 181
HgaI	GACGC	2 cut(s)	288, 564
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	4 cut(s)	295, 301, 505, 805
HinfI	GANTC	5 cut(s)	103, 311, 377, 467, 545
HpaII	CCGG	3 cut(s)	68, 113, 181
HphI	GGTGA	4 cut(s)	199, 401, 517, 540
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	6 cut(s)	249, 310, 460, 544, 565, 796
Hpy188III	TCNNGA	6 cut(s)	96, 157, 407, 464, 704, 721
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	3 cut(s)	436, 451, 586
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	7 cut(s)	8, 77, 127, 194, 383, 484, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 124, 427
HpyF3I	CTNAG	2 cut(s)	562, 744
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	4 cut(s)	295, 301, 505, 805
Kzo9I	GATC	4 cut(s)	146, 153, 460, 554
LmnI	GCTCC	5 cut(s)	85, 115, 136, 535, 706
Lsp1109I	GCAGC	4 cut(s)	61, 83, 89, 430
LweI	GCATC	1 cut(s)	622
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	19, 187, 389
MalI	GATC	4 cut(s)	148, 155, 462, 556
MboI	GATC	4 cut(s)	146, 153, 460, 554
MboII	GAAGA	5 cut(s)	286, 465, 686, 689, 692
MhlI	GDGCHC	2 cut(s)	141, 711
MluCI	AATT	4 cut(s)	354, 514, 665, 755
MluI	ACGCGT	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	8 cut(s)	93, 127, 207, 261, 380, 483, 529, 571
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	2 cut(s)	446, 735
MslI	CAYNNNNRTG	2 cut(s)	296, 621
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	3 cut(s)	68, 113, 181
MspR9I	CCNGG	4 cut(s)	113, 131, 262, 552
MvaI	CCWGG	3 cut(s)	131, 262, 552
MvnI	CGCG	2 cut(s)	88, 575
MwoI	GCNNNNNNNGC	3 cut(s)	77, 124, 427
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	4 cut(s)	146, 153, 460, 554
NlaIII	CATG	4 cut(s)	295, 301, 505, 805
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	3 cut(s)	19, 187, 389
NspV	TTCGAA	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	719
PaqCI	CACCTGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	4 cut(s)	103, 377, 467, 545
PkrI	GCNGC	4 cut(s)	73, 76, 79, 420
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp124BI	GAGCTC	2 cut(s)	141, 711
Psp6I	CCWGG	3 cut(s)	129, 260, 550
PspGI	CCWGG	3 cut(s)	129, 260, 550
PspN4I	GGNNCC	1 cut(s)	15
PstI	CTGCAG	3 cut(s)	79, 196, 385
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	438, 480
RsaNI	GTAC	2 cut(s)	437, 479
RseI	CAYNNNNRTG	2 cut(s)	296, 621
SacI	GAGCTC	2 cut(s)	141, 711
SaqAI	TTAA	2 cut(s)	446, 735
SatI	GCNGC	4 cut(s)	72, 75, 78, 419
Sau3AI	GATC	4 cut(s)	146, 153, 460, 554
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	4 cut(s)	113, 131, 262, 552
SduI	GDGCHC	2 cut(s)	141, 711
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	4 cut(s)	75, 192, 381, 582
Sfr274I	CTCGAG	1 cut(s)	719
SfuI	TTCGAA	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	296, 621
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	4 cut(s)	354, 514, 665, 755
SsiI	CCGC	3 cut(s)	86, 430, 774
SspI	AATATT	1 cut(s)	815
SstI	GAGCTC	2 cut(s)	141, 711
StyD4I	CCNGG	4 cut(s)	111, 129, 260, 550
TaaI	ACNGT	3 cut(s)	436, 451, 586
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	145, 202, 557, 720
TasI	AATT	4 cut(s)	354, 514, 665, 755
TatI	WGTACW	1 cut(s)	478
TfiI	GAWTC	4 cut(s)	103, 377, 467, 545
Tru1I	TTAA	2 cut(s)	446, 735
Tru9I	TTAA	2 cut(s)	446, 735
TscAI	CASTG	3 cut(s)	15, 24, 46
TseFI	GTSAC	3 cut(s)	19, 187, 389
TseI	GCWGC	4 cut(s)	71, 74, 77, 418
Tsp45I	GTSAC	3 cut(s)	19, 187, 389
TspDTI	ATGAA	1 cut(s)	790
TspRI	CASTG	3 cut(s)	15, 24, 46
XapI	RAATTY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	719
XmnI	GAANNNNTTC	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.