Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

4237392 .. 4239082

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTCATCCTTGCTCTTTGGTGTCTCCCGAACTCGCCTTAGCCATCATAGTTTGAATAATAGGGCTCTGCCTGAATACTCGATCAAAGCTGCATATCCTCAGCCTGCAGTACTACTCACTCCAAAGCTTAGCTCTACTTCCAACATGACCCAAGTCCCTTTGTTCCTCCATCAGATGGTTCCAGTGACGTCTGATGAGCAAGGCAGAAATAGCAGTGATTGTTTTAATAGTGATAAACAACCGGCAGCTGCAGCTCCTCCGCGAAGTTCCCGATGGCATCCAACCCCGGAGCAGATAATGCACCTGGAGGAGCTCTATCAATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGTGAACTCATGTCCATGTATCAGTCTGACTCTAAACAACAACAACAACAACAAACTTGGACTAACACCACAATTAGCGGTCTCCCAGACAAAGAATCTGCAGGAGTTGACTCTGTTGGTCGTCTTGAAGTTGAGCAGCAGAATAAGCGGACACTACCAAAGTTCACTTTACTTTCTGATCAGGAATCATCTTCAGTACCGCAAGAGAGGATGATGAGCATGGTGAAAAGAAATTCCTCCAGGCAACTTGTGGAACAATCCGGTTCACCTGGACCGACCTCAGACACAAACGCGTCAGCTACATTAATTTACAAAAAGCTCTTGGACTTTCATCACTATTACGATTATGATTACGGTATGATATTGACTACACCCAATATTTACAAAGATGAGCAAGAAGAAGAAAGTAGAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAAAGCGACAATCTCAAGGGTGCTAAGGATACGAAATTACACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

315

Amino Acids

36.01

Weight (kDa)

8.98

Isoelectric Point (pI)

68.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	88 - 149	1.2e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccII	CGCG	2 cut(s)	262, 749
AciI	CCGC	4 cut(s)	260, 534, 604, 656
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	2 cut(s)	188, 454
AfaI	GTAC	2 cut(s)	111, 654
AfiI	CCNNNNNNNGG	3 cut(s)	175, 436, 441
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	4 cut(s)	55, 395, 584, 899
AjnI	CCWGG	4 cut(s)	303, 434, 695, 724
AluBI	AGCT	9 cut(s)	89, 127, 132, 248, 254, 313, 755, 775, 886
AluI	AGCT	9 cut(s)	89, 127, 132, 248, 254, 313, 755, 775, 886
Alw21I	GWGCWC	2 cut(s)	315, 888
Alw26I	GTCTC	3 cut(s)	28, 445, 542
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	5 cut(s)	89, 245, 248, 251, 592
ApoI	RAATTY	1 cut(s)	688
AseI	ATTAAT	1 cut(s)	761
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	343, 728
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	3 cut(s)	373, 691, 714
AsuII	TTCGAA	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	728
BanII	GRGCYC	3 cut(s)	67, 315, 888
Bbv12I	GWGCWC	2 cut(s)	315, 888
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	5 cut(s)	76, 235, 257, 263, 604
BccI	CCATC	4 cut(s)	51, 169, 177, 267
BceAI	ACGGC	3 cut(s)	357, 386, 441
BciT130I	CCWGG	4 cut(s)	305, 436, 697, 726
BciVI	GTATCC	1 cut(s)	919
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	3 cut(s)	28, 445, 542
BfmI	CTRYAG	3 cut(s)	105, 249, 555
BfuI	GTATCC	1 cut(s)	919
BisI	GCNGC	5 cut(s)	90, 246, 249, 252, 593
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	5 cut(s)	91, 247, 250, 253, 594
BmcAI	AGTACT	1 cut(s)	111
Bme1390I	CCNGG	5 cut(s)	287, 305, 436, 697, 726
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	2 cut(s)	343, 728
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	5 cut(s)	287, 305, 436, 697, 726
BmsI	GCATC	1 cut(s)	286
BoxI	GACNNNNGTC	1 cut(s)	152
BpmI	CTGGAG	3 cut(s)	326, 679, 902
Bpu10I	CCTNAGC	3 cut(s)	38, 99, 921
Bpu1102I	GCTNAGC	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	287
BsaHI	GRCGYC	2 cut(s)	188, 454
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	285, 435
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 436, 441
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	182, 419
BseBI	CCWGG	4 cut(s)	305, 436, 697, 726
BseDI	CCNNGG	2 cut(s)	285, 435
BseGI	GGATG	3 cut(s)	5, 277, 672
BseLI	CCNNNNNNNGG	3 cut(s)	175, 436, 441
BseMII	CTCAG	2 cut(s)	113, 750
BseNI	ACTGG	2 cut(s)	182, 419
BseRI	GAGGAG	2 cut(s)	246, 323
BseXI	GCAGC	5 cut(s)	76, 235, 257, 263, 604
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	262, 749
BshFI	GGCC	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	315, 888
BsiSI	CCGG	3 cut(s)	242, 287, 717
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	175, 436, 441
BsmAI	GTCTC	3 cut(s)	28, 445, 542
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	3 cut(s)	67, 315, 888
Bsp143I	GATC	3 cut(s)	81, 327, 634
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	4 cut(s)	260, 534, 604, 656
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	112, 749
BspFNI	CGCG	2 cut(s)	262, 749
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	3 cut(s)	109, 253, 559
BspPI	GGATC	1 cut(s)	335
BspT104I	TTCGAA	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	182, 419
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	285, 435
BssMI	GATC	3 cut(s)	81, 327, 634
BssNI	GRCGYC	2 cut(s)	188, 454
Bst2UI	CCWGG	4 cut(s)	305, 436, 697, 726
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	1 cut(s)	443
BstACI	GRCGYC	2 cut(s)	188, 454
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	5 cut(s)	38, 99, 128, 736, 921
BstF5I	GGATG	3 cut(s)	5, 277, 672
BstFNI	CGCG	2 cut(s)	262, 749
BstKTI	GATC	3 cut(s)	84, 330, 637
BstMAI	GTCTC	3 cut(s)	28, 445, 542
BstMBI	GATC	3 cut(s)	81, 327, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 251, 298, 601
BstNI	CCWGG	4 cut(s)	305, 436, 697, 726
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	5 cut(s)	285, 303, 434, 695, 724
BstSFI	CTRYAG	3 cut(s)	105, 249, 555
BstUI	CGCG	2 cut(s)	262, 749
BstV1I	GCAGC	5 cut(s)	76, 235, 257, 263, 604
BsuI	GTATCC	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	3 cut(s)	5, 277, 672
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	189, 220
Cac8I	GCNNGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	343, 728
CseI	GACGC	2 cut(s)	462, 738
Csp6I	GTAC	2 cut(s)	110, 653
CviAII	CATG	4 cut(s)	145, 466, 472, 676
CviQI	GTAC	2 cut(s)	110, 653
DdeI	CTNAG	5 cut(s)	38, 99, 128, 736, 921
DpnI	GATC	3 cut(s)	83, 329, 636
DpnII	GATC	3 cut(s)	81, 327, 634
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Ecl136II	GAGCTC	2 cut(s)	313, 886
Eco24I	GRGCYC	3 cut(s)	67, 315, 888
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	728
Eco53kI	GAGCTC	2 cut(s)	313, 886
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	2 cut(s)	313, 886
EcoRII	CCWGG	4 cut(s)	303, 434, 695, 724
EcoT38I	GRGCYC	3 cut(s)	67, 315, 888
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	4 cut(s)	148, 469, 475, 679
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	4 cut(s)	144, 465, 471, 675
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	5 cut(s)	90, 246, 249, 252, 593
FokI	GGATG	2 cut(s)	264, 679
FriOI	GRGCYC	3 cut(s)	67, 315, 888
Fsp4HI	GCNGC	5 cut(s)	90, 246, 249, 252, 593
GluI	GCNGC	5 cut(s)	90, 246, 249, 252, 593
GsuI	CTGGAG	3 cut(s)	326, 679, 902
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	3 cut(s)	242, 287, 717
HgaI	GACGC	2 cut(s)	462, 738
Hin1I	GRCGYC	2 cut(s)	188, 454
Hin1II	CATG	4 cut(s)	148, 469, 475, 679
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	4 cut(s)	485, 551, 566, 641
HpaII	CCGG	3 cut(s)	242, 287, 717
HphI	GGTGA	3 cut(s)	373, 691, 714
Hpy166II	GTNNAC	4 cut(s)	461, 565, 621, 722
Hpy188I	TCNGA	7 cut(s)	174, 193, 356, 423, 484, 634, 739
Hpy188III	TCNNGA	6 cut(s)	27, 270, 331, 581, 638, 881
Hpy8I	GTNNAC	4 cut(s)	461, 565, 621, 722
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	6 cut(s)	92, 107, 251, 301, 368, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 251, 298, 601
HpyF3I	CTNAG	5 cut(s)	38, 99, 128, 736, 921
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	2 cut(s)	188, 454
Hsp92II	CATG	4 cut(s)	148, 469, 475, 679
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	3 cut(s)	81, 327, 634
LmnI	GCTCC	4 cut(s)	259, 289, 310, 883
Lsp1109I	GCAGC	5 cut(s)	76, 235, 257, 263, 604
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	184, 361
MalI	GATC	3 cut(s)	83, 329, 636
MboI	GATC	3 cut(s)	81, 327, 634
MboII	GAAGA	4 cut(s)	460, 639, 866, 869
MhlI	GDGCHC	3 cut(s)	67, 315, 888
MluCI	AATT	4 cut(s)	528, 688, 762, 932
MluI	ACGCGT	1 cut(s)	747
MlyI	GAGTC	2 cut(s)	479, 560
MmeI	TCCRAC	3 cut(s)	165, 305, 379
MnlI	CCTC	9 cut(s)	108, 176, 267, 301, 381, 435, 657, 703, 745
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	2 cut(s)	225, 761
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	242, 287, 717
MspR9I	CCNGG	5 cut(s)	287, 305, 436, 697, 726
MvaI	CCWGG	4 cut(s)	305, 436, 697, 726
MvnI	CGCG	2 cut(s)	262, 749
MwoI	GCNNNNNNNGC	4 cut(s)	210, 251, 298, 601
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	81, 327, 634
NlaIII	CATG	4 cut(s)	148, 469, 475, 679
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	184, 361
NspV	TTCGAA	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	551, 641
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	91, 247, 250, 253, 594
PleI	GAGTC	2 cut(s)	479, 560
PpsI	GAGTC	2 cut(s)	479, 560
PshAI	GACNNNNGTC	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	761
Psp124BI	GAGCTC	2 cut(s)	315, 888
Psp6I	CCWGG	4 cut(s)	303, 434, 695, 724
PspGI	CCWGG	4 cut(s)	303, 434, 695, 724
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	343, 728
PstI	CTGCAG	3 cut(s)	109, 253, 559
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	111, 654
RsaNI	GTAC	2 cut(s)	110, 653
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	2 cut(s)	315, 888
SaqAI	TTAA	2 cut(s)	225, 761
SatI	GCNGC	5 cut(s)	90, 246, 249, 252, 593
Sau3AI	GATC	3 cut(s)	81, 327, 634
Sau96I	GGNCC	2 cut(s)	343, 728
ScaI	AGTACT	1 cut(s)	111
SchI	GAGTC	2 cut(s)	479, 560
ScrFI	CCNGG	5 cut(s)	287, 305, 436, 697, 726
SduI	GDGCHC	3 cut(s)	67, 315, 888
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	3 cut(s)	105, 249, 555
SfuI	TTCGAA	1 cut(s)	376
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
Sse9I	AATT	4 cut(s)	528, 688, 762, 932
SsiI	CCGC	4 cut(s)	260, 534, 604, 656
SspI	AATATT	1 cut(s)	835
SstI	GAGCTC	2 cut(s)	315, 888
StyD4I	CCNGG	5 cut(s)	285, 303, 434, 695, 724
TaaI	ACNGT	1 cut(s)	812
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	80, 376
TaqII	GACCGA	1 cut(s)	745
TasI	AATT	4 cut(s)	528, 688, 762, 932
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	2 cut(s)	551, 641
Tru1I	TTAA	2 cut(s)	225, 761
Tru9I	TTAA	2 cut(s)	225, 761
TscAI	CASTG	2 cut(s)	189, 220
TseFI	GTSAC	2 cut(s)	184, 361
TseI	GCWGC	5 cut(s)	89, 245, 248, 251, 592
Tsp45I	GTSAC	2 cut(s)	184, 361
TspDTI	ATGAA	1 cut(s)	776
TspRI	CASTG	2 cut(s)	189, 220
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	728
VspI	ATTAAT	1 cut(s)	761
XapI	RAATTY	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	407
ZraI	GACGTC	1 cut(s)	189
ZrmI	AGTACT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.