Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

60414897 .. 60417630

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCGATCCAAAGAAGGGGATATGTGGTCTGGGGTGGTTCCAGTGACGTCTGATGAGCAAGGCAGAAATAGCGGTGATTGTTTTTATAGTGATAAACAACCGGCAGCTGCAGCCCCTCCGCGAAGTTCCCGATGGAATCCAACCCCGGAGCAGATAATGCATCTGGAGGAGCTCTATCGATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGTGCCAGGGAGAGGCAGAAGAGACGCCGTGAAATCATGTCCATGTATCAGTTCAAAGTTGAGCAGGTGTTAAAATTAATTAACAGATCAGATTATCACAAGTTATGGAAATTAAATTCCTCTAGGCAACTTGTGGAACAATACGGTTCACCTGGACCGACCTCAGACATAAACGCGTCAGCTACATTAATTTACAAAAAGCTCTTGGACTTTCATCACTATTACGATTATGATTACGGTATGATATTGACTACACCCAATATTTACAAAGACGAGCAAGAAGAAGAAAGTAGAGAAACTCAGACTCTGGAGCTCTTTCCACTTGAGAGCGACAATCTCAAGGGTGCTAAGGATACGAAATTACACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

219

Amino Acids

25.77

Weight (kDa)

8.99

Isoelectric Point (pI)

66.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	41 - 102	7e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
AatII	GACGTC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	343
AccII	CGCG	2 cut(s)	121, 464
AciI	CCGC	2 cut(s)	72, 119
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	403
AcyI	GRCGYC	2 cut(s)	47, 313
AfiI	CCNNNNNNNGG	3 cut(s)	15, 295, 300
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	254, 343
AjnI	CCWGG	2 cut(s)	293, 439
AluBI	AGCT	5 cut(s)	107, 172, 470, 490, 601
AluI	AGCT	5 cut(s)	107, 172, 470, 490, 601
Alw21I	GWGCWC	2 cut(s)	174, 603
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	595
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	104, 107, 110
ApoI	RAATTY	1 cut(s)	403
AseI	ATTAAT	2 cut(s)	365, 476
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	202, 443
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	86, 232, 429
AsuII	TTCGAA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	174, 603
Bbv12I	GWGCWC	2 cut(s)	174, 603
BbvI	GCAGC	3 cut(s)	94, 116, 122
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	3 cut(s)	216, 245, 300
BciT130I	CCWGG	2 cut(s)	295, 441
BciVI	GTATCC	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	343
BfuI	GTATCC	1 cut(s)	634
BisI	GCNGC	3 cut(s)	105, 108, 111
BlsI	GCNGC	3 cut(s)	106, 109, 112
Bme1390I	CCNGG	3 cut(s)	146, 295, 441
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	202, 443
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	146, 295, 441
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	185, 617
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	235
BpuEI	CTTGAG	2 cut(s)	611, 632
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	178
BsaHI	GRCGYC	2 cut(s)	47, 313
BsaJI	CCNNGG	2 cut(s)	144, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 295, 300
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	41, 278
BseBI	CCWGG	2 cut(s)	295, 441
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	144, 294
BseLI	CCNNNNNNNGG	3 cut(s)	15, 295, 300
BseMII	CTCAG	2 cut(s)	465, 602
BseNI	ACTGG	2 cut(s)	41, 278
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	94, 116, 122
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	121, 464
BshFI	GGCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	174, 603
BsiSI	CCGG	2 cut(s)	101, 146
BslI	CCNNNNNNNGG	3 cut(s)	15, 295, 300
BsmAI	GTCTC	1 cut(s)	304
BsmBI	CGTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	174, 603
Bsp143I	GATC	4 cut(s)	5, 179, 186, 374
BspACI	CCGC	2 cut(s)	72, 119
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	464, 601
BspDI	ATCGAT	1 cut(s)	178
BspFNI	CGCG	2 cut(s)	121, 464
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	41, 278
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	144, 294
BssMI	GATC	4 cut(s)	5, 179, 186, 374
BssNI	GRCGYC	2 cut(s)	47, 313
Bst2UI	CCWGG	2 cut(s)	295, 441
Bst4CI	ACNGT	3 cut(s)	290, 434, 527
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	2 cut(s)	47, 313
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	235
BstDEI	CTNAG	3 cut(s)	451, 588, 636
BstFNI	CGCG	2 cut(s)	121, 464
BstKTI	GATC	4 cut(s)	8, 182, 189, 377
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	4 cut(s)	5, 179, 186, 374
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 110, 157
BstNI	CCWGG	2 cut(s)	295, 441
BstSCI	CCNGG	3 cut(s)	144, 293, 439
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	2 cut(s)	121, 464
BstV1I	GCAGC	3 cut(s)	94, 116, 122
Bsu15I	ATCGAT	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	202, 443
ClaI	ATCGAT	1 cut(s)	178
CseI	GACGC	2 cut(s)	321, 453
CviAII	CATG	2 cut(s)	325, 331
CviJI	RGCY	8 cut(s)	107, 113, 172, 203, 232, 470, 490, 601
CviKI_1	RGCY	8 cut(s)	107, 113, 172, 203, 232, 470, 490, 601
DdeI	CTNAG	3 cut(s)	451, 588, 636
DpnI	GATC	4 cut(s)	7, 181, 188, 376
DpnII	GATC	4 cut(s)	5, 179, 186, 374
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	2 cut(s)	172, 601
Eco24I	GRGCYC	2 cut(s)	174, 603
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	2 cut(s)	172, 601
EcoICRI	GAGCTC	2 cut(s)	172, 601
EcoRII	CCWGG	2 cut(s)	293, 439
EcoT22I	ATGCAT	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	174, 603
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	2 cut(s)	328, 334
FatI	CATG	2 cut(s)	324, 330
Fnu4HI	GCNGC	3 cut(s)	105, 108, 111
FriOI	GRGCYC	2 cut(s)	174, 603
Fsp4HI	GCNGC	3 cut(s)	105, 108, 111
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	3 cut(s)	105, 108, 111
GsuI	CTGGAG	2 cut(s)	185, 617
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	101, 146
HgaI	GACGC	2 cut(s)	321, 453
Hin1I	GRCGYC	2 cut(s)	47, 313
Hin1II	CATG	2 cut(s)	328, 334
HinfI	GANTC	2 cut(s)	136, 592
HpaII	CCGG	2 cut(s)	101, 146
HphI	GGTGA	3 cut(s)	86, 232, 429
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	6 cut(s)	52, 215, 282, 379, 454, 591
Hpy188III	TCNNGA	4 cut(s)	129, 164, 190, 596
Hpy8I	GTNNAC	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	8, 248
HpyCH4III	ACNGT	3 cut(s)	290, 434, 527
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	110, 160, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 110, 157
HpyF3I	CTNAG	3 cut(s)	451, 588, 636
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	47, 313
Hsp92II	CATG	2 cut(s)	328, 334
Kzo9I	GATC	4 cut(s)	5, 179, 186, 374
LmnI	GCTCC	3 cut(s)	148, 169, 598
Lsp1109I	GCAGC	3 cut(s)	94, 116, 122
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	43, 220
MalI	GATC	4 cut(s)	7, 181, 188, 376
MboI	GATC	4 cut(s)	5, 179, 186, 374
MboII	GAAGA	3 cut(s)	319, 581, 584
MhlI	GDGCHC	2 cut(s)	174, 603
MluCI	AATT	6 cut(s)	362, 366, 398, 403, 477, 647
MluI	ACGCGT	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	2 cut(s)	164, 238
MnlI	CCTC	6 cut(s)	126, 160, 240, 294, 418, 460
Mph1103I	ATGCAT	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	5 cut(s)	359, 365, 369, 401, 476
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	101, 146
MspR9I	CCNGG	3 cut(s)	146, 295, 441
MvaI	CCWGG	2 cut(s)	295, 441
MvnI	CGCG	2 cut(s)	121, 464
MwoI	GCNNNNNNNGC	3 cut(s)	69, 110, 157
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	4 cut(s)	5, 179, 186, 374
NlaIII	CATG	2 cut(s)	328, 334
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	43, 220
NsiI	ATGCAT	1 cut(s)	162
NspV	TTCGAA	1 cut(s)	235
PacI	TTAATTAA	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	106, 109, 112
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PshBI	ATTAAT	2 cut(s)	365, 476
Psp124BI	GAGCTC	2 cut(s)	174, 603
Psp6I	CCWGG	2 cut(s)	293, 439
PspGI	CCWGG	2 cut(s)	293, 439
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	202, 443
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	2 cut(s)	174, 603
SaqAI	TTAA	5 cut(s)	359, 365, 369, 401, 476
SatI	GCNGC	3 cut(s)	105, 108, 111
Sau3AI	GATC	4 cut(s)	5, 179, 186, 374
Sau96I	GGNCC	2 cut(s)	202, 443
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	3 cut(s)	146, 295, 441
SduI	GDGCHC	2 cut(s)	174, 603
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	235
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	611, 626
SmoI	CTYRAG	2 cut(s)	611, 626
Sse9I	AATT	6 cut(s)	362, 366, 398, 403, 477, 647
SsiI	CCGC	2 cut(s)	72, 119
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	2 cut(s)	174, 603
StyD4I	CCNGG	3 cut(s)	144, 293, 439
TaaI	ACNGT	3 cut(s)	290, 434, 527
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	178, 235
TaqII	GACCGA	1 cut(s)	460
TasI	AATT	6 cut(s)	362, 366, 398, 403, 477, 647
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	5 cut(s)	359, 365, 369, 401, 476
Tru9I	TTAA	5 cut(s)	359, 365, 369, 401, 476
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	43, 220
TseI	GCWGC	3 cut(s)	104, 107, 110
Tsp45I	GTSAC	2 cut(s)	43, 220
TspDTI	ATGAA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	2 cut(s)	365, 476
XapI	RAATTY	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	411
ZraI	GACGTC	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.