Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

57616256 .. 57616657

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTATGCAGTGGTTCCAGTAATGTCTGATGAGCAAGGCAGAAGTAGCAGTGGTTGTTTTTATAGTGATAAACAACCGGCAGCTGGAGCTCCTCGGCGAAGCTGCCGATGGAATCCAACCCCGGAGCAGATAAAGGACCTGGAAGAGCTGTATCGATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGACTGCGCGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGTGAACTCATCTCCATGCATCAGTCTGACACTAAACAACAGCAACAAACTTTGATTAACAGCAAGATTACCAGTCTCCAGAAAAAAGAATCTGCAGGAGGTACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

133

Amino Acids

15.4

Weight (kDa)

10.24

Isoelectric Point (pI)

86.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	34 - 94	4e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	1 cut(s)	205
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	289
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	3 cut(s)	83, 271, 276
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	138, 269
AluBI	AGCT	4 cut(s)	83, 89, 102, 148
AluI	AGCT	4 cut(s)	83, 89, 102, 148
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	280, 371
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	80, 102
Asp700I	GAANNNNTTC	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	136, 178
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	89, 92
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	2 cut(s)	192, 276
BciT130I	CCWGG	2 cut(s)	140, 271
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	280, 371
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	3 cut(s)	81, 103, 206
BlsI	GCNGC	3 cut(s)	82, 104, 207
Bme1390I	CCNGG	3 cut(s)	122, 140, 271
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 178
BmiI	GGNNCC	2 cut(s)	15, 394
BmrFI	CCNGG	3 cut(s)	122, 140, 271
BmsI	GCATC	1 cut(s)	319
BpmI	CTGGAG	2 cut(s)	105, 353
Bpu14I	TTCGAA	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	154
BsaHI	GRCGYC	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	92, 120, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 271, 276
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	17, 254, 363
BseBI	CCWGG	2 cut(s)	140, 271
BseCI	ATCGAT	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	92, 120, 270
BseLI	CCNNNNNNNGG	3 cut(s)	83, 271, 276
BseNI	ACTGG	3 cut(s)	17, 254, 363
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	89, 92
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	77, 122
BslI	CCNNNNNNNGG	3 cut(s)	83, 271, 276
BsmAI	GTCTC	2 cut(s)	280, 371
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	155, 162
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	15, 394
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	17, 254, 363
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	92, 120, 270
BssMI	GATC	2 cut(s)	155, 162
BssNI	GRCGYC	1 cut(s)	289
Bst2UI	CCWGG	2 cut(s)	140, 271
Bst6I	CTCTTC	2 cut(s)	138, 278
BstACI	GRCGYC	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	158, 165
BstMAI	GTCTC	2 cut(s)	280, 371
BstMBI	GATC	2 cut(s)	155, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 86
BstNI	CCWGG	2 cut(s)	140, 271
BstSCI	CCNGG	3 cut(s)	120, 138, 269
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	89, 92
Bsu15I	ATCGAT	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	15, 55
BtsIMutI	CAGTG	2 cut(s)	15, 55
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	136, 178
ClaI	ATCGAT	1 cut(s)	154
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	7 cut(s)	83, 89, 102, 148, 179, 208, 269
CviKI_1	RGCY	7 cut(s)	83, 89, 102, 148, 179, 208, 269
CviQI	GTAC	1 cut(s)	393
DpnI	GATC	2 cut(s)	157, 164
DpnII	GATC	2 cut(s)	155, 162
Eam1104I	CTCTTC	2 cut(s)	138, 278
EarI	CTCTTC	2 cut(s)	138, 278
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	138, 269
EcoT22I	ATGCAT	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	310
FaiI	YATR	4 cut(s)	6, 63, 219, 308
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	81, 103, 206
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	3 cut(s)	81, 103, 206
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	3 cut(s)	81, 103, 206
GsuI	CTGGAG	2 cut(s)	105, 353
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	77, 122
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	112, 380
HpaII	CCGG	2 cut(s)	77, 122
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	4 cut(s)	28, 191, 258, 319
Hpy188III	TCNNGA	2 cut(s)	166, 370
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	8, 310, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 86
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	203
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	155, 162
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	3 cut(s)	86, 94, 124
Lsp1109I	GCAGC	2 cut(s)	89, 92
LweI	GCATC	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	157, 164
MboI	GATC	2 cut(s)	155, 162
MboII	GAAGA	2 cut(s)	155, 295
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	1 cut(s)	397
MmeI	TCCRAC	2 cut(s)	140, 214
MnlI	CCTC	4 cut(s)	102, 216, 270, 383
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	2 cut(s)	348, 400
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	77, 122
MspR9I	CCNGG	3 cut(s)	122, 140, 271
MvaI	CCWGG	2 cut(s)	140, 271
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	45, 86
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	155, 162
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	2 cut(s)	15, 394
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	312
NspV	TTCGAA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	112, 380
PkrI	GCNGC	3 cut(s)	82, 104, 207
PpuMI	RGGWCCY	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	138, 269
PspGI	CCWGG	2 cut(s)	138, 269
PspN4I	GGNNCC	2 cut(s)	15, 394
PspPI	GGNCC	2 cut(s)	136, 178
PspPPI	RGGWCCY	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	348, 400
SatI	GCNGC	3 cut(s)	81, 103, 206
Sau3AI	GATC	2 cut(s)	155, 162
Sau96I	GGNCC	2 cut(s)	136, 178
ScrFI	CCNGG	3 cut(s)	122, 140, 271
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	7 cut(s)	85, 91, 104, 141, 150, 198, 394
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	211
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	205
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	3 cut(s)	120, 138, 269
TaqI	TCGA	2 cut(s)	154, 211
TasI	AATT	1 cut(s)	397
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	112, 380
Tru1I	TTAA	2 cut(s)	348, 400
Tru9I	TTAA	2 cut(s)	348, 400
TscAI	CASTG	2 cut(s)	15, 55
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	80, 102
Tsp45I	GTSAC	1 cut(s)	196
TspRI	CASTG	2 cut(s)	15, 55
VpaK11BI	GGWCC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.