Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

59471012 .. 59472529

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTATGCAGTGGTTCCAGTAATGTCTGATGAGCAAGGCAGAAGTAGCAGTGGTTGTTTTTATAGTGATAAACAACCGGCAGCTGGAGCTCCTCGGCGAAGCTGCCGATGGAATCCAACCCCGGAGCAGATAAAGGACCTGGAAGAGCTGTATAGATCTGGGATCAAGACACCGACGGCCCAACAAATCCGACAGGTGACTGCGCGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGTGAACTCATCTCCATGCATCAGTCTGACACTAAACAACAGCAACAAACTTTGATTAACAGCAATATTACCAGTCTCCAGAAAAAAGAATCTGCAGGAGTTAGCTCTGTTGGTCGTCTTGAAGTTGAGCAGCAAAATAGGCCGACCCTACCAAATTTCACTGTTCTTTCCGATCAGGAATCATCTTCAGTACTGCAAGAGAGAATGATGAGCATGGTGAAAAGCAATTCCTCCAGGCTACCTGTGGAACAATCCGATTCACCTGGACCGACCTCATCAGACACAAACGCGTCATCAGCTACATTAATTTGCACAAAGCTCTTGGACTTTCATCACTATTATGATTATGACTACGGTATGGTATTGACTGCACCCAATATTTACAAAGAAGAAGAAAAAGACAGCAAAGAAACTCAAACTCTAGAGCTCTTTCCACTTGAGAGCGACAATCTTAAGAGTGCTAAGCATACCAAATTACCTATGAGCAGAACAAGCACTGCAGATTTCAAGGAAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

272

Amino Acids

31.18

Weight (kDa)

8.62

Isoelectric Point (pI)

78.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	34 - 94	1.7e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	205, 581
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	289
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	83, 271, 276
AflII	CTTAAG	1 cut(s)	743
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	3 cut(s)	230, 413, 799
AjnI	CCWGG	4 cut(s)	138, 269, 524, 553
AluBI	AGCT	8 cut(s)	83, 89, 102, 148, 396, 590, 610, 718
AluI	AGCT	8 cut(s)	83, 89, 102, 148, 396, 590, 610, 718
Alw21I	GWGCWC	2 cut(s)	91, 720
Alw26I	GTCTC	2 cut(s)	280, 371
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	2 cut(s)	177, 431
ApeKI	GCWGC	3 cut(s)	80, 102, 421
ApoI	RAATTY	1 cut(s)	445
AseI	ATTAAT	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	3 cut(s)	136, 178, 557
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	208, 520, 543
AsuII	TTCGAA	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	136, 557
BanII	GRGCYC	2 cut(s)	91, 720
BbsI	GAAGAC	1 cut(s)	810
Bbv12I	GWGCWC	2 cut(s)	91, 720
BbvI	GCAGC	3 cut(s)	89, 92, 433
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	2 cut(s)	192, 276
BciT130I	CCWGG	4 cut(s)	140, 271, 526, 555
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	280, 371
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	2 cut(s)	384, 789
BfrI	CTTAAG	1 cut(s)	743
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	4 cut(s)	81, 103, 206, 422
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	4 cut(s)	82, 104, 207, 423
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	5 cut(s)	122, 140, 271, 526, 555
Bme18I	GGWCC	2 cut(s)	136, 557
BmgT120I	GGNCC	3 cut(s)	136, 178, 557
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	5 cut(s)	122, 140, 271, 526, 555
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	810
BpmI	CTGGAG	3 cut(s)	105, 353, 508
Bpu1102I	GCTNAGC	1 cut(s)	753
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	92, 120, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 271, 276
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	17, 254, 363
BseBI	CCWGG	4 cut(s)	140, 271, 526, 555
BseDI	CCNNGG	3 cut(s)	92, 120, 270
BseLI	CCNNNNNNNGG	3 cut(s)	83, 271, 276
BseNI	ACTGG	3 cut(s)	17, 254, 363
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	89, 92, 433
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	2 cut(s)	205, 581
BshFI	GGCC	2 cut(s)	179, 433
BsiHKAI	GWGCWC	2 cut(s)	91, 720
BsiSI	CCGG	2 cut(s)	77, 122
BslI	CCNNNNNNNGG	3 cut(s)	83, 271, 276
BsmAI	GTCTC	2 cut(s)	280, 371
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	179, 433
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	91, 720
Bsp143I	GATC	3 cut(s)	155, 162, 463
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	2 cut(s)	179, 433
BspFNI	CGCG	2 cut(s)	205, 581
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	2 cut(s)	388, 793
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	743
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	17, 254, 363
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	92, 120, 270
BssMI	GATC	3 cut(s)	155, 162, 463
BssNI	GRCGYC	1 cut(s)	289
Bst2UI	CCWGG	4 cut(s)	140, 271, 526, 555
Bst4CI	ACNGT	2 cut(s)	454, 647
Bst6I	CTCTTC	2 cut(s)	138, 278
BstACI	GRCGYC	1 cut(s)	289
BstAFI	CTTAAG	1 cut(s)	743
BstBI	TTCGAA	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	753
BstFNI	CGCG	2 cut(s)	205, 581
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	158, 165, 466
BstMAI	GTCTC	2 cut(s)	280, 371
BstMBI	GATC	3 cut(s)	155, 162, 463
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 86, 430, 587, 783
BstNI	CCWGG	4 cut(s)	140, 271, 526, 555
BstSCI	CCNGG	5 cut(s)	120, 138, 269, 524, 553
BstSFI	CTRYAG	2 cut(s)	384, 789
BstUI	CGCG	2 cut(s)	205, 581
BstV1I	GCAGC	3 cut(s)	89, 92, 433
BstV2I	GAAGAC	1 cut(s)	810
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	179, 433
BtsI	GCAGTG	3 cut(s)	15, 55, 786
BtsIMutI	CAGTG	4 cut(s)	15, 55, 450, 786
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	136, 178, 557
CseI	GACGC	2 cut(s)	297, 570
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	2 cut(s)	307, 505
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	3 cut(s)	157, 164, 465
DpnII	GATC	3 cut(s)	155, 162, 463
Eam1104I	CTCTTC	2 cut(s)	138, 278
EarI	CTCTTC	2 cut(s)	138, 278
Ecl136II	GAGCTC	2 cut(s)	89, 718
Eco24I	GRGCYC	2 cut(s)	91, 720
Eco47I	GGWCC	2 cut(s)	136, 557
Eco53kI	GAGCTC	2 cut(s)	89, 718
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	2 cut(s)	89, 718
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	4 cut(s)	138, 269, 524, 553
EcoT22I	ATGCAT	1 cut(s)	312
EcoT38I	GRGCYC	2 cut(s)	91, 720
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	310, 508
FatI	CATG	2 cut(s)	306, 504
Fnu4HI	GCNGC	4 cut(s)	81, 103, 206, 422
FriOI	GRGCYC	2 cut(s)	91, 720
Fsp4HI	GCNGC	4 cut(s)	81, 103, 206, 422
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	4 cut(s)	81, 103, 206, 422
GsuI	CTGGAG	3 cut(s)	105, 353, 508
HaeIII	GGCC	2 cut(s)	179, 433
HapII	CCGG	2 cut(s)	77, 122
HgaI	GACGC	2 cut(s)	297, 570
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	2 cut(s)	310, 508
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	4 cut(s)	112, 380, 470, 548
HpaII	CCGG	2 cut(s)	77, 122
HphI	GGTGA	3 cut(s)	208, 520, 543
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	7 cut(s)	28, 191, 258, 319, 463, 547, 571
Hpy188III	TCNNGA	5 cut(s)	166, 370, 410, 467, 713
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	454, 647
HpyCH4V	TGCA	7 cut(s)	8, 310, 386, 487, 603, 662, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 86, 430, 587, 783
HpyF3I	CTNAG	1 cut(s)	753
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	2 cut(s)	310, 508
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	3 cut(s)	155, 162, 463
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	3 cut(s)	86, 94, 124
Lsp1109I	GCAGC	3 cut(s)	89, 92, 433
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	3 cut(s)	157, 164, 465
MboI	GATC	3 cut(s)	155, 162, 463
MboII	GAAGA	6 cut(s)	155, 295, 468, 692, 695, 815
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	91, 720
MluCI	AATT	4 cut(s)	445, 517, 597, 764
MluI	ACGCGT	1 cut(s)	579
MmeI	TCCRAC	2 cut(s)	140, 214
MnlI	CCTC	5 cut(s)	102, 216, 270, 532, 574
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	3 cut(s)	348, 596, 744
MslI	CAYNNNNRTG	2 cut(s)	305, 630
MspA1I	CMGCKG	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	2 cut(s)	77, 122
MspR9I	CCNGG	5 cut(s)	122, 140, 271, 526, 555
MvaI	CCWGG	4 cut(s)	140, 271, 526, 555
MvnI	CGCG	2 cut(s)	205, 581
MwoI	GCNNNNNNNGC	5 cut(s)	45, 86, 430, 587, 783
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	3 cut(s)	155, 162, 463
NlaIII	CATG	2 cut(s)	310, 508
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	312
NspV	TTCGAA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	112, 380, 470, 548
PkrI	GCNGC	4 cut(s)	82, 104, 207, 423
PpuMI	RGGWCCY	1 cut(s)	136
PshBI	ATTAAT	1 cut(s)	596
Psp124BI	GAGCTC	2 cut(s)	91, 720
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	4 cut(s)	138, 269, 524, 553
PspGI	CCWGG	4 cut(s)	138, 269, 524, 553
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	3 cut(s)	136, 178, 557
PspPPI	RGGWCCY	1 cut(s)	136
PstI	CTGCAG	2 cut(s)	388, 793
PsuI	RGATCY	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	305, 630
SacI	GAGCTC	2 cut(s)	91, 720
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	348, 596, 744
SatI	GCNGC	4 cut(s)	81, 103, 206, 422
Sau3AI	GATC	3 cut(s)	155, 162, 463
Sau96I	GGNCC	3 cut(s)	136, 178, 557
ScaI	AGTACT	1 cut(s)	483
ScrFI	CCNGG	5 cut(s)	122, 140, 271, 526, 555
SduI	GDGCHC	2 cut(s)	91, 720
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	384, 789
SfuI	TTCGAA	1 cut(s)	211
SinI	GGWCC	2 cut(s)	136, 557
SmiMI	CAYNNNNRTG	2 cut(s)	305, 630
SmlI	CTYRAG	2 cut(s)	728, 743
SmoI	CTYRAG	2 cut(s)	728, 743
Sse9I	AATT	4 cut(s)	445, 517, 597, 764
SsiI	CCGC	1 cut(s)	205
SspI	AATATT	3 cut(s)	358, 670, 812
SspMI	CTAG	1 cut(s)	713
SstI	GAGCTC	2 cut(s)	91, 720
StyD4I	CCNGG	5 cut(s)	120, 138, 269, 524, 553
TaaI	ACNGT	2 cut(s)	454, 647
TaqI	TCGA	1 cut(s)	211
TaqII	GACCGA	1 cut(s)	574
TasI	AATT	4 cut(s)	445, 517, 597, 764
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	4 cut(s)	112, 380, 470, 548
Tru1I	TTAA	3 cut(s)	348, 596, 744
Tru9I	TTAA	3 cut(s)	348, 596, 744
TscAI	CASTG	4 cut(s)	15, 55, 457, 793
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	80, 102, 421
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	611
TspRI	CASTG	4 cut(s)	15, 55, 457, 793
Vha464I	CTTAAG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	136, 557
VspI	ATTAAT	1 cut(s)	596
XapI	RAATTY	1 cut(s)	445
XbaI	TCTAGA	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.