Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000159.1

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

151372 .. 153273

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000159.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgtggacgatgatgggtagcagcagtggttgtagagaccctaatattagggctcttcctgagtactcgatcaaagctgcatatcctcagcctgcagtattactcactccaaagcttagctctacttccaacatgaccaaaatccctttgttaccattccaccaccaccatcagatggttccagtgacatcgaatgagaaaggcagaaatagcagtgattgttcttatagtcataaacaaccggcagctgcagctgctccacgaagatcccgatggactccaaccccggagcagatagtgcatctggaagagctgtatcgatctgcgatcaagacgccgacggcacaacaaatccgacaggtgactgcacggcttcgaaactatgggagggttgaaggcaagaatatattctactggtttcagaaccgccgagccagggagaggcagaagacacgccgtgaactcatgtccatgcatcagtccgactctaaacaacaacaacaaactttgactaacaacacaattagctgtctccgagacaaagaatctgcaggagttgactttgttcgttgttttgaagttgagcagcagcggacactaccaagcttcactcttcttaccgatcagcagcttgcttcaaataaaaaaagcccgaggtcgtcagggctggcggatagcttggcacctggagacataggtggcaggatggatgagatacaaattcaagagtatactttgtttgggttaggcgaagtccagaggtggagcgagatacctccatggggaaattttaaatacacacctcaaactacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

271

Amino Acids

30.95

Weight (kDa)

9.74

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	3 cut(s)	427, 592, 671
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	720, 787
AcyI	GRCGYC	1 cut(s)	335
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	4 cut(s)	175, 436, 441, 782
AgsI	TTSAA	4 cut(s)	395, 578, 639, 725
AjnI	CCWGG	2 cut(s)	434, 685
Alw26I	GTCTC	4 cut(s)	30, 531, 536, 684
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	652
ApeKI	GCWGC	9 cut(s)	21, 77, 245, 248, 251, 254, 586, 589, 628
ApoI	RAATTY	2 cut(s)	720, 787
Asp700I	GAANNNNTTC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	373
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	9 cut(s)	33, 64, 235, 241, 257, 263, 598, 601, 640
BccI	CCATC	5 cut(s)	7, 169, 177, 267, 700
BceAI	ACGGC	3 cut(s)	357, 386, 441
BciT130I	CCWGG	2 cut(s)	436, 687
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	4 cut(s)	30, 531, 536, 684
BfmI	CTRYAG	3 cut(s)	93, 249, 549
BisI	GCNGC	9 cut(s)	22, 78, 246, 249, 252, 255, 587, 590, 629
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	9 cut(s)	23, 79, 247, 250, 253, 256, 588, 591, 630
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	3 cut(s)	287, 436, 687
BmeT110I	CYCGRG	1 cut(s)	652
BmiI	GGNNCC	2 cut(s)	180, 684
BmrFI	CCNGG	3 cut(s)	287, 436, 687
BmsI	GCATC	2 cut(s)	310, 484
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	285, 435, 653, 779
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 436, 441, 782
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	182, 419
BseBI	CCWGG	2 cut(s)	436, 687
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	4 cut(s)	285, 435, 653, 779
BseGI	GGATG	2 cut(s)	711, 715
BseLI	CCNNNNNNNGG	4 cut(s)	175, 436, 441, 782
BseMII	CTCAG	2 cut(s)	51, 101
BseNI	ACTGG	2 cut(s)	182, 419
BseXI	GCAGC	9 cut(s)	33, 64, 235, 241, 257, 263, 598, 601, 640
BsgI	GTGCAG	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	682
BshVI	ATCGAT	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	652
BsiSI	CCGG	2 cut(s)	242, 287
BslI	CCNNNNNNNGG	4 cut(s)	175, 436, 441, 782
BsmAI	GTCTC	4 cut(s)	30, 531, 536, 684
Bso31I	GGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	652
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	5 cut(s)	69, 266, 320, 327, 622
Bsp1720I	GCTNAGC	1 cut(s)	116
Bsp19I	CCATGG	1 cut(s)	779
BspACI	CCGC	3 cut(s)	427, 592, 671
BspCNI	CTCAG	2 cut(s)	52, 100
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	180, 684
BspMAI	CTGCAG	3 cut(s)	97, 253, 553
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	2 cut(s)	60, 303
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	682
BspTNI	GGTCTC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	182, 419
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	4 cut(s)	285, 435, 653, 779
BssMI	GATC	5 cut(s)	69, 266, 320, 327, 622
BssNAI	GTATAC	1 cut(s)	732
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	779
Bst1107I	GTATAC	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	436, 687
Bst6I	CTCTTC	3 cut(s)	60, 303, 618
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	93, 633, 669
BstDEI	CTNAG	3 cut(s)	60, 87, 116
BstDSI	CCRYGG	1 cut(s)	779
BstF5I	GGATG	2 cut(s)	711, 715
BstKTI	GATC	5 cut(s)	72, 269, 323, 330, 625
BstMAI	GTCTC	4 cut(s)	30, 531, 536, 684
BstMBI	GATC	5 cut(s)	69, 266, 320, 327, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 251, 254, 298
BstNI	CCWGG	2 cut(s)	436, 687
BstSCI	CCNGG	3 cut(s)	285, 434, 685
BstSFI	CTRYAG	3 cut(s)	93, 249, 549
BstV1I	GCAGC	9 cut(s)	33, 64, 235, 241, 257, 263, 598, 601, 640
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BstZ17I	GTATAC	1 cut(s)	732
Bsu15I	ATCGAT	1 cut(s)	319
BsuTUI	ATCGAT	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	779
BtsCI	GGATG	2 cut(s)	711, 715
BtsI	GCAGTG	2 cut(s)	31, 220
BtsIMutI	CAGTG	3 cut(s)	31, 189, 220
Cac8I	GCNNGC	3 cut(s)	93, 633, 669
Cfr10I	RCCGGY	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	319
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	4 cut(s)	133, 466, 472, 780
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	60, 87, 116
DpnI	GATC	5 cut(s)	71, 268, 322, 329, 624
DpnII	GATC	5 cut(s)	69, 266, 320, 327, 622
DraI	TTTAAA	1 cut(s)	793
DraIII	CACNNNGTG	1 cut(s)	458
Eam1104I	CTCTTC	3 cut(s)	60, 303, 618
EarI	CTCTTC	3 cut(s)	60, 303, 618
EciI	GGCGGA	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	652
EcoRII	CCWGG	2 cut(s)	434, 685
EcoT14I	CCWWGG	1 cut(s)	779
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	779
FaeI	CATG	4 cut(s)	136, 469, 475, 783
FatI	CATG	4 cut(s)	132, 465, 471, 779
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	9 cut(s)	22, 78, 246, 249, 252, 255, 587, 590, 629
FokI	GGATG	2 cut(s)	718, 722
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	9 cut(s)	22, 78, 246, 249, 252, 255, 587, 590, 629
GluI	GCNGC	9 cut(s)	22, 78, 246, 249, 252, 255, 587, 590, 629
GsuI	CTGGAG	1 cut(s)	708
HapII	CCGG	2 cut(s)	242, 287
HgaI	GACGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	4 cut(s)	136, 469, 475, 783
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	113, 604
HinfI	GANTC	3 cut(s)	277, 485, 545
HpaII	CCGG	2 cut(s)	242, 287
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	4 cut(s)	6, 461, 559, 732
Hpy188I	TCNGA	5 cut(s)	174, 356, 423, 484, 536
Hpy188III	TCNNGA	6 cut(s)	59, 270, 305, 331, 725, 757
Hpy8I	GTNNAC	4 cut(s)	6, 461, 559, 732
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	389
HpyCH4V	TGCA	7 cut(s)	80, 95, 251, 301, 368, 475, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 251, 254, 298
HpyF3I	CTNAG	3 cut(s)	60, 87, 116
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	136, 469, 475, 783
Kzo9I	GATC	5 cut(s)	69, 266, 320, 327, 622
LguI	GCTCTTC	2 cut(s)	60, 303
LmnI	GCTCC	3 cut(s)	262, 289, 765
Lsp1109I	GCAGC	9 cut(s)	33, 64, 235, 241, 257, 263, 598, 601, 640
LweI	GCATC	2 cut(s)	310, 484
MaeIII	GTNAC	3 cut(s)	150, 184, 361
MalI	GATC	5 cut(s)	71, 268, 322, 329, 624
MboI	GATC	5 cut(s)	69, 266, 320, 327, 622
MboII	GAAGA	5 cut(s)	47, 276, 320, 460, 605
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	3 cut(s)	522, 720, 787
MlyI	GAGTC	2 cut(s)	271, 479
MmeI	TCCRAC	4 cut(s)	153, 305, 379, 507
MnlI	CCTC	7 cut(s)	96, 381, 435, 648, 753, 786, 813
Mph1103I	ATGCAT	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	2 cut(s)	792, 814
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	3 cut(s)	248, 254, 592
MspI	CCGG	2 cut(s)	242, 287
MspR9I	CCNGG	3 cut(s)	287, 436, 687
MvaI	CCWGG	2 cut(s)	436, 687
MwoI	GCNNNNNNNGC	4 cut(s)	210, 251, 254, 298
NciI	CCSGG	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	779
NdeII	GATC	5 cut(s)	69, 266, 320, 327, 622
NlaIII	CATG	4 cut(s)	136, 469, 475, 783
NlaIV	GGNNCC	2 cut(s)	180, 684
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	184, 361
NsiI	ATGCAT	1 cut(s)	477
NspV	TTCGAA	1 cut(s)	376
PciSI	GCTCTTC	2 cut(s)	60, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	9 cut(s)	23, 79, 247, 250, 253, 256, 588, 591, 630
PleI	GAGTC	2 cut(s)	271, 479
PpsI	GAGTC	2 cut(s)	271, 479
Psp6I	CCWGG	2 cut(s)	434, 685
PspGI	CCWGG	2 cut(s)	434, 685
PspN4I	GGNNCC	2 cut(s)	180, 684
PstI	CTGCAG	3 cut(s)	97, 253, 553
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	2 cut(s)	248, 254
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	470
SapI	GCTCTTC	2 cut(s)	60, 303
SaqAI	TTAA	2 cut(s)	792, 814
SatI	GCNGC	9 cut(s)	22, 78, 246, 249, 252, 255, 587, 590, 629
Sau3AI	GATC	5 cut(s)	69, 266, 320, 327, 622
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	2 cut(s)	271, 479
ScrFI	CCNGG	3 cut(s)	287, 436, 687
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	2 cut(s)	310, 484
SfcI	CTRYAG	3 cut(s)	93, 249, 549
SfuI	TTCGAA	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	470
Sse9I	AATT	3 cut(s)	522, 720, 787
SsiI	CCGC	3 cut(s)	427, 592, 671
SspI	AATATT	1 cut(s)	46
StyD4I	CCNGG	3 cut(s)	285, 434, 685
StyI	CCWWGG	1 cut(s)	779
TaqI	TCGA	4 cut(s)	68, 191, 319, 376
TasI	AATT	3 cut(s)	522, 720, 787
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	2 cut(s)	792, 814
Tru9I	TTAA	2 cut(s)	792, 814
TscAI	CASTG	3 cut(s)	31, 189, 220
TseFI	GTSAC	2 cut(s)	184, 361
TseI	GCWGC	9 cut(s)	21, 77, 245, 248, 251, 254, 586, 589, 628
Tsp45I	GTSAC	2 cut(s)	184, 361
TspRI	CASTG	3 cut(s)	31, 189, 220
Van91I	CCANNNNNTGG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	720, 787
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	407
ZrmI	AGTACT	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.