Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

23152995 .. 23153719

Gene Structure 725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCTGGGTAGCAGCAGTGGTTGTAGAGACCCTAATAATAGGGCTCTGCCTGAGTACTCGATCAAAGCTGCATATCCTCAGTCTGCAATACTACTCACTCCAAAGCTTAGCTCTACTTCCAACATGACCCAAATCCCATTGTTACCATTCAACCACCACCATCAGATGGTTCCAGTGGCGTCGAATGAGCAAGGCAGAAATAGCAGTGATTGTTCTTATAGTTATAAACAACCGGCAGCTGCAGCTGCTCCGCGAAGATCCCGATGGACTCCAACCCCGGAGCAAATAATGCATCTGGAAGAGCTGTATCGATCTGGGATCAAGACGCCATTGGCCCAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATATATTCTACTGGTTTCAGAACCGCCGAGCCAGGGAGAGGCAGAAGACACGCCGTAAACTCACGTCCATGCATCAGTCCGACTCTAAAAAACAACAACAACAACAACAACAAACTGTGACTAACAACACAATTAGCAGTCTCCGGGACAAAGAATCTGCAGGAGGTACCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

190

Amino Acids

21.54

Weight (kDa)

10.45

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	85 - 146	2.2e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccII	CGCG	1 cut(s)	253
AciI	CCGC	2 cut(s)	251, 418
AclWI	GGATC	2 cut(s)	252, 326
AcyI	GRCGYC	2 cut(s)	179, 326
AfaI	GTAC	2 cut(s)	56, 562
AfiI	CCNNNNNNNGG	3 cut(s)	166, 427, 432
AgsI	TTSAA	2 cut(s)	151, 386
AjiI	CACGTC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	425
AluBI	AGCT	6 cut(s)	68, 106, 111, 239, 245, 304
AluI	AGCT	6 cut(s)	68, 106, 111, 239, 245, 304
Alw26I	GTCTC	2 cut(s)	21, 539
AlwI	GGATC	2 cut(s)	252, 326
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	6 cut(s)	12, 68, 236, 239, 242, 245
Asp700I	GAANNNNTTC	1 cut(s)	398
Asp718I	GGTACC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	2 cut(s)	278, 539
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	446
BbvI	GCAGC	6 cut(s)	24, 55, 226, 232, 248, 254
BccI	CCATC	3 cut(s)	160, 168, 258
BceAI	ACGGC	2 cut(s)	377, 432
BciT130I	CCWGG	1 cut(s)	427
BcnI	CCSGG	2 cut(s)	278, 539
BcoDI	GTCTC	2 cut(s)	21, 539
BfmI	CTRYAG	2 cut(s)	240, 552
BisI	GCNGC	6 cut(s)	13, 69, 237, 240, 243, 246
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	6 cut(s)	14, 70, 238, 241, 244, 247
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	3 cut(s)	278, 427, 539
BmgBI	CACGTC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	171, 562
BmrFI	CCNGG	3 cut(s)	278, 427, 539
BmsI	GCATC	2 cut(s)	301, 475
BpiI	GAAGAC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	367
BpuMI	CCSGG	2 cut(s)	278, 539
Bsa29I	ATCGAT	1 cut(s)	310
BsaHI	GRCGYC	2 cut(s)	179, 326
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	276, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 427, 432
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	173, 410
BseBI	CCWGG	1 cut(s)	427
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	276, 426
BseLI	CCNNNNNNNGG	3 cut(s)	166, 427, 432
BseMII	CTCAG	2 cut(s)	42, 92
BseNI	ACTGG	2 cut(s)	173, 410
BseXI	GCAGC	6 cut(s)	24, 55, 226, 232, 248, 254
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	310
BsiSI	CCGG	3 cut(s)	233, 278, 538
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	3 cut(s)	166, 427, 432
BsmAI	GTCTC	2 cut(s)	21, 539
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	60, 257, 311, 318
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	251, 418
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	43, 91
BspDI	ATCGAT	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	171, 562
BspMAI	CTGCAG	2 cut(s)	244, 556
BspPI	GGATC	2 cut(s)	252, 326
BspQI	GCTCTTC	1 cut(s)	294
BspT104I	TTCGAA	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	173, 410
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	276, 426
BssMI	GATC	4 cut(s)	60, 257, 311, 318
BssNI	GRCGYC	2 cut(s)	179, 326
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	2 cut(s)	179, 326
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	51, 78, 107
BstFNI	CGCG	1 cut(s)	253
BstKTI	GATC	4 cut(s)	63, 260, 314, 321
BstMAI	GTCTC	2 cut(s)	21, 539
BstMBI	GATC	4 cut(s)	60, 257, 311, 318
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 242, 245, 289
BstNI	CCWGG	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	276, 425, 537
BstSFI	CTRYAG	2 cut(s)	240, 552
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	6 cut(s)	24, 55, 226, 232, 248, 254
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	459
BtsI	GCAGTG	2 cut(s)	22, 211
BtsIMutI	CAGTG	3 cut(s)	22, 180, 211
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	334
ClaI	ATCGAT	1 cut(s)	310
CseI	GACGC	2 cut(s)	168, 334
Csp6I	GTAC	2 cut(s)	55, 561
CviAII	CATG	2 cut(s)	124, 463
CviQI	GTAC	2 cut(s)	55, 561
DdeI	CTNAG	3 cut(s)	51, 78, 107
DpnI	GATC	4 cut(s)	62, 259, 313, 320
DpnII	GATC	4 cut(s)	60, 257, 311, 318
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	425
EcoT22I	ATGCAT	2 cut(s)	294, 468
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	2 cut(s)	127, 466
FaiI	YATR	7 cut(s)	73, 125, 219, 225, 375, 398, 464
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	2 cut(s)	123, 462
Fnu4HI	GCNGC	6 cut(s)	13, 69, 237, 240, 243, 246
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	6 cut(s)	13, 69, 237, 240, 243, 246
GluI	GCNGC	6 cut(s)	13, 69, 237, 240, 243, 246
GsaI	CCCAGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	3 cut(s)	233, 278, 538
HgaI	GACGC	2 cut(s)	168, 334
Hin1I	GRCGYC	2 cut(s)	179, 326
Hin1II	CATG	2 cut(s)	127, 466
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	268, 476, 548
HpaII	CCGG	3 cut(s)	233, 278, 538
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	4 cut(s)	165, 347, 414, 475
Hpy188III	TCNNGA	3 cut(s)	261, 296, 322
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	7 cut(s)	71, 86, 242, 292, 359, 466, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 242, 245, 289
HpyF3I	CTNAG	3 cut(s)	51, 78, 107
HpySE526I	ACGT	1 cut(s)	458
Hsp92I	GRCGYC	2 cut(s)	179, 326
Hsp92II	CATG	2 cut(s)	127, 466
KpnI	GGTACC	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	60, 257, 311, 318
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	253, 280
Lsp1109I	GCAGC	6 cut(s)	24, 55, 226, 232, 248, 254
LweI	GCATC	2 cut(s)	301, 475
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	3 cut(s)	141, 352, 511
MalI	GATC	4 cut(s)	62, 259, 313, 320
MboI	GATC	4 cut(s)	60, 257, 311, 318
MboII	GAAGA	3 cut(s)	267, 311, 451
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	262, 470
MmeI	TCCRAC	4 cut(s)	144, 296, 370, 498
MnlI	CCTC	4 cut(s)	87, 372, 426, 551
Mph1103I	ATGCAT	2 cut(s)	294, 468
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	568
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	2 cut(s)	239, 245
MspI	CCGG	3 cut(s)	233, 278, 538
MspR9I	CCNGG	3 cut(s)	278, 427, 539
MvaI	CCWGG	1 cut(s)	427
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	201, 242, 245, 289
NciI	CCSGG	2 cut(s)	278, 539
NdeII	GATC	4 cut(s)	60, 257, 311, 318
NlaIII	CATG	2 cut(s)	127, 466
NlaIV	GGNNCC	2 cut(s)	171, 562
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	2 cut(s)	352, 511
NsiI	ATGCAT	2 cut(s)	294, 468
NspV	TTCGAA	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	166
PfoI	TCCNGGA	1 cut(s)	537
PkrI	GCNGC	6 cut(s)	14, 70, 238, 241, 244, 247
PleI	GAGTC	2 cut(s)	262, 470
PpsI	GAGTC	2 cut(s)	262, 470
PsiI	TTATAA	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	171, 562
PspPI	GGNCC	1 cut(s)	334
PstI	CTGCAG	2 cut(s)	244, 556
PsuI	RGATCY	1 cut(s)	257
PvuII	CAGCTG	2 cut(s)	239, 245
RsaI	GTAC	2 cut(s)	56, 562
RsaNI	GTAC	2 cut(s)	55, 561
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	568
SatI	GCNGC	6 cut(s)	13, 69, 237, 240, 243, 246
Sau3AI	GATC	4 cut(s)	60, 257, 311, 318
Sau96I	GGNCC	1 cut(s)	334
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	2 cut(s)	262, 470
ScrFI	CCNGG	3 cut(s)	278, 427, 539
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	70, 108, 113, 241, 247, 306, 354, 461, 562
SfaNI	GCATC	2 cut(s)	301, 475
SfcI	CTRYAG	2 cut(s)	240, 552
SfuI	TTCGAA	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	2 cut(s)	251, 418
StyD4I	CCNGG	3 cut(s)	276, 425, 537
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	4 cut(s)	59, 182, 310, 367
TasI	AATT	1 cut(s)	525
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	1 cut(s)	568
Tru9I	TTAA	1 cut(s)	568
TscAI	CASTG	3 cut(s)	22, 180, 211
TseFI	GTSAC	2 cut(s)	352, 511
TseI	GCWGC	6 cut(s)	12, 68, 236, 239, 242, 245
Tsp45I	GTSAC	2 cut(s)	352, 511
TspRI	CASTG	3 cut(s)	22, 180, 211
Van91I	CCANNNNNTGG	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	56
Zsp2I	ATGCAT	2 cut(s)	294, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.