Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000159.1

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

87326 .. 88061

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000159.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgtggacgacgatgggtagcagcagtggttgtagagaccctaatattagggctctgcctgagtactcgatcaaagctgcatatcctcagcctgcagtactactcacaccaaagcttagctctacttccaacatgacccaaatccctttgttaccattccaccaccaccatcagatggttccagtgacgtcgaatgagaaaggcagaaatagcagtgattgttcttatagtcataaacaaccggcagctgcagctgctcctcgaagatcccgatggactccaaccccggagcagatagtgcatctggaagagctgtatcgatctgggatcaagacgccgacggcccaacaaatccgacaggtgactgcacggcttcaaaactatgggagggttgaaggcaagaatatattctactggtttcagaaccgccgagccagggagaggcagaagacacgccgtgcactcatgtccatgcatcagtccgactctaaacaacaacaacaacaaactttgactaacaacacaattagctgtctccgagacaaaaaatctgcaggaggtaccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

189

Amino Acids

21.52

Weight (kDa)

10.43

Isoelectric Point (pI)

69.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	2 cut(s)	261, 335
AcyI	GRCGYC	2 cut(s)	188, 335
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	3 cut(s)	65, 99, 562
AfiI	CCNNNNNNNGG	3 cut(s)	175, 436, 441
AgsI	TTSAA	2 cut(s)	377, 395
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	7 cut(s)	77, 115, 120, 248, 254, 313, 531
AluI	AGCT	7 cut(s)	77, 115, 120, 248, 254, 313, 531
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	3 cut(s)	30, 534, 539
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	261, 335
AoxI	GGCC	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	6 cut(s)	21, 77, 245, 248, 251, 254
Asp700I	GAANNNNTTC	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	463
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	6 cut(s)	33, 64, 235, 241, 257, 263
BccI	CCATC	4 cut(s)	7, 169, 177, 267
BceAI	ACGGC	3 cut(s)	357, 386, 441
BciT130I	CCWGG	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	3 cut(s)	30, 534, 539
BfmI	CTRYAG	3 cut(s)	93, 249, 552
BisI	GCNGC	6 cut(s)	22, 78, 246, 249, 252, 255
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	6 cut(s)	23, 79, 247, 250, 253, 256
BmcAI	AGTACT	2 cut(s)	65, 99
Bme1390I	CCNGG	2 cut(s)	287, 436
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	180, 562
BmrFI	CCNGG	2 cut(s)	287, 436
BmsI	GCATC	2 cut(s)	310, 484
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	188, 335
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	285, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 436, 441
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	182, 419
BseBI	CCWGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	285, 435
BseLI	CCNNNNNNNGG	3 cut(s)	175, 436, 441
BseMII	CTCAG	2 cut(s)	51, 101
BseNI	ACTGG	2 cut(s)	182, 419
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	6 cut(s)	33, 64, 235, 241, 257, 263
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	242, 287
BslI	CCNNNNNNNGG	3 cut(s)	175, 436, 441
BsmAI	GTCTC	3 cut(s)	30, 534, 539
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	55, 463
Bsp143I	GATC	4 cut(s)	69, 266, 320, 327
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	52, 100
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	180, 562
BspMAI	CTGCAG	3 cut(s)	97, 253, 556
BspPI	GGATC	2 cut(s)	261, 335
BspQI	GCTCTTC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	182, 419
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	285, 435
BssMI	GATC	4 cut(s)	69, 266, 320, 327
BssNI	GRCGYC	2 cut(s)	188, 335
Bst2UI	CCWGG	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	2 cut(s)	188, 335
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	60, 87, 116
BstKTI	GATC	4 cut(s)	72, 269, 323, 330
BstMAI	GTCTC	3 cut(s)	30, 534, 539
BstMBI	GATC	4 cut(s)	69, 266, 320, 327
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 251, 254, 298
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	285, 434
BstSFI	CTRYAG	3 cut(s)	93, 249, 552
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	6 cut(s)	33, 64, 235, 241, 257, 263
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
Bsu15I	ATCGAT	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	319
BtsI	GCAGTG	2 cut(s)	31, 220
BtsIMutI	CAGTG	3 cut(s)	31, 189, 220
Cac8I	GCNNGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	343
ClaI	ATCGAT	1 cut(s)	319
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	64, 98, 561
CviAII	CATG	3 cut(s)	133, 466, 472
CviQI	GTAC	3 cut(s)	64, 98, 561
DdeI	CTNAG	3 cut(s)	60, 87, 116
DpnI	GATC	4 cut(s)	71, 268, 322, 329
DpnII	GATC	4 cut(s)	69, 266, 320, 327
DraIII	CACNNNGTG	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	3 cut(s)	136, 469, 475
FaiI	YATR	8 cut(s)	82, 134, 228, 234, 384, 407, 467, 473
FatI	CATG	3 cut(s)	132, 465, 471
Fnu4HI	GCNGC	6 cut(s)	22, 78, 246, 249, 252, 255
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	6 cut(s)	22, 78, 246, 249, 252, 255
GluI	GCNGC	6 cut(s)	22, 78, 246, 249, 252, 255
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	2 cut(s)	242, 287
HgaI	GACGC	1 cut(s)	343
Hin1I	GRCGYC	2 cut(s)	188, 335
Hin1II	CATG	3 cut(s)	136, 469, 475
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	277, 485
HpaII	CCGG	2 cut(s)	242, 287
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	6, 461
Hpy188I	TCNGA	5 cut(s)	174, 356, 423, 484, 539
Hpy188III	TCNNGA	3 cut(s)	270, 305, 331
Hpy8I	GTNNAC	2 cut(s)	6, 461
Hpy99I	CGWCG	3 cut(s)	13, 193, 343
HpyAV	CCTTC	1 cut(s)	389
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	8 cut(s)	80, 95, 251, 301, 368, 461, 475, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 251, 254, 298
HpyF3I	CTNAG	3 cut(s)	60, 87, 116
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	2 cut(s)	188, 335
Hsp92II	CATG	3 cut(s)	136, 469, 475
KpnI	GGTACC	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	69, 266, 320, 327
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	2 cut(s)	262, 289
Lsp1109I	GCAGC	6 cut(s)	33, 64, 235, 241, 257, 263
LweI	GCATC	2 cut(s)	310, 484
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	3 cut(s)	150, 184, 361
MalI	GATC	4 cut(s)	71, 268, 322, 329
MboI	GATC	4 cut(s)	69, 266, 320, 327
MboII	GAAGA	3 cut(s)	276, 320, 460
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	55, 463
MluCI	AATT	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	271, 479
MmeI	TCCRAC	4 cut(s)	153, 305, 379, 507
MnlI	CCTC	5 cut(s)	96, 270, 381, 435, 551
Mph1103I	ATGCAT	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	1 cut(s)	568
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	248, 254
MspI	CCGG	2 cut(s)	242, 287
MspR9I	CCNGG	2 cut(s)	287, 436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	4 cut(s)	210, 251, 254, 298
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	4 cut(s)	69, 266, 320, 327
NlaIII	CATG	3 cut(s)	136, 469, 475
NlaIV	GGNNCC	2 cut(s)	180, 562
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	184, 361
NsiI	ATGCAT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	6 cut(s)	23, 79, 247, 250, 253, 256
PleI	GAGTC	2 cut(s)	271, 479
PpsI	GAGTC	2 cut(s)	271, 479
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	180, 562
PspPI	GGNCC	1 cut(s)	343
PstI	CTGCAG	3 cut(s)	97, 253, 556
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	2 cut(s)	248, 254
RsaI	GTAC	3 cut(s)	65, 99, 562
RsaNI	GTAC	3 cut(s)	64, 98, 561
RseI	CAYNNNNRTG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	568
SatI	GCNGC	6 cut(s)	22, 78, 246, 249, 252, 255
Sau3AI	GATC	4 cut(s)	69, 266, 320, 327
Sau96I	GGNCC	1 cut(s)	343
ScaI	AGTACT	2 cut(s)	65, 99
SchI	GAGTC	2 cut(s)	271, 479
ScrFI	CCNGG	2 cut(s)	287, 436
SduI	GDGCHC	2 cut(s)	55, 463
SfaNI	GCATC	2 cut(s)	310, 484
SfcI	CTRYAG	3 cut(s)	93, 249, 552
SmiMI	CAYNNNNRTG	1 cut(s)	470
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	1 cut(s)	427
SspI	AATATT	1 cut(s)	46
StyD4I	CCNGG	2 cut(s)	285, 434
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	4 cut(s)	68, 191, 262, 319
TasI	AATT	1 cut(s)	525
TatI	WGTACW	2 cut(s)	63, 97
Tru1I	TTAA	1 cut(s)	568
Tru9I	TTAA	1 cut(s)	568
TscAI	CASTG	3 cut(s)	31, 189, 220
TseFI	GTSAC	2 cut(s)	184, 361
TseI	GCWGC	6 cut(s)	21, 77, 245, 248, 251, 254
Tsp45I	GTSAC	2 cut(s)	184, 361
TspRI	CASTG	3 cut(s)	31, 189, 220
Van91I	CCANNNNNTGG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	407
ZraI	GACGTC	1 cut(s)	189
ZrmI	AGTACT	2 cut(s)	65, 99
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.