Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000159.1

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Forward (+)

243422 .. 245457

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000159.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgatgggtagcagcggtggttgtagagaccctaataatagggctcggcctgagtacttctcgatcaaagctgcatgtcctcagcctgcagtactactcactccaaagcttagctgtacttccaacatgacccaaagccctttgttaccattcaaccaccaccatcagatggttccagtgacgtcgaatgagcaaggcagacatagcagtgattgtttttatagtgataaacaaccggcagctgcagctcctcctcgaagttcccgatggactccaaccccggagcagataatgcatctggaagagctgtatcgatctgggatcaagacaccgacagcccaacaaatccgacatgtggctgcacggcttcgaaactatgggagggttgaaggcaagaatgtattctactggtttcagaaccgccgagccagggagaggcagaagacacgccgtgaactcatgtccatgcatcagtctgactctaaacaacaacaacaacaacaaactttgactaagaacacaattagcagtctccgggacaaagaatctgcaggagctgactttcttcgttgttttgaagttgagcagcagaatagtcgaacactaccaagcttcactcttcttaccgatcagcagcttgcttcaaataaaaaaagcccgaggtcgtcagggctggcggatagcttggcacctggagacataggtggcaggatggatgagatacaaattcaagagtatactttgtttgggttaggcgaagtccagaggtggagcgagatacctccatggggaaattttaaatacacacctcaaactacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

273

Amino Acids

31.05

Weight (kDa)

9.55

Isoelectric Point (pI)

73.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	737
AciI	CCGC	3 cut(s)	15, 421, 677
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	2 cut(s)	726, 793
AcyI	GRCGYC	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	3 cut(s)	56, 93, 118
AfiI	CCNNNNNNNGG	5 cut(s)	169, 355, 430, 435, 788
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	5 cut(s)	154, 389, 578, 645, 731
AjnI	CCWGG	2 cut(s)	428, 691
Alw26I	GTCTC	3 cut(s)	21, 536, 690
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	8 cut(s)	12, 71, 239, 242, 245, 359, 586, 634
ApoI	RAATTY	2 cut(s)	726, 793
Asp700I	GAANNNNTTC	1 cut(s)	401
AsuC2I	CCSGG	2 cut(s)	281, 536
AsuII	TTCGAA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	449
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	8 cut(s)	24, 58, 229, 251, 257, 346, 598, 646
BccI	CCATC	4 cut(s)	163, 171, 261, 706
BceAI	ACGGC	2 cut(s)	380, 435
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciT130I	CCWGG	2 cut(s)	430, 693
BcnI	CCSGG	2 cut(s)	281, 536
BcoDI	GTCTC	3 cut(s)	21, 536, 690
BfmI	CTRYAG	3 cut(s)	87, 243, 549
BisI	GCNGC	8 cut(s)	13, 72, 240, 243, 246, 360, 587, 635
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	8 cut(s)	14, 73, 241, 244, 247, 361, 588, 636
BmcAI	AGTACT	2 cut(s)	56, 93
Bme1390I	CCNGG	4 cut(s)	281, 430, 536, 693
BmeT110I	CYCGRG	1 cut(s)	658
BmiI	GGNNCC	2 cut(s)	174, 690
BmrFI	CCNGG	4 cut(s)	281, 430, 536, 693
BmsI	GCATC	2 cut(s)	304, 478
BpiI	GAAGAC	1 cut(s)	449
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	370
BpuMI	CCSGG	2 cut(s)	281, 536
Bsa29I	ATCGAT	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	279, 429, 659, 785
Bsc4I	CCNNNNNNNGG	5 cut(s)	169, 355, 430, 435, 788
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	176, 413
BseBI	CCWGG	2 cut(s)	430, 693
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	4 cut(s)	279, 429, 659, 785
BseGI	GGATG	2 cut(s)	717, 721
BseLI	CCNNNNNNNGG	5 cut(s)	169, 355, 430, 435, 788
BseMII	CTCAG	2 cut(s)	42, 95
BseNI	ACTGG	2 cut(s)	176, 413
BseRI	GAGGAG	2 cut(s)	240, 243
BseXI	GCAGC	8 cut(s)	24, 58, 229, 251, 257, 346, 598, 646
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	688
BshVI	ATCGAT	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	3 cut(s)	236, 281, 535
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	5 cut(s)	169, 355, 430, 435, 788
BsmAI	GTCTC	3 cut(s)	21, 536, 690
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	658
Bsp119I	TTCGAA	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	63, 314, 321, 628
Bsp1720I	GCTNAGC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	785
BspACI	CCGC	3 cut(s)	15, 421, 677
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	43, 94
BspDI	ATCGAT	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	174, 690
BspMAI	CTGCAG	3 cut(s)	91, 247, 553
BspPI	GGATC	1 cut(s)	329
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	688
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	176, 413
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	279, 429, 659, 785
BssMI	GATC	4 cut(s)	63, 314, 321, 628
BssNAI	GTATAC	1 cut(s)	738
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	785
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	2 cut(s)	430, 693
Bst6I	CTCTTC	2 cut(s)	297, 624
BstACI	GRCGYC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	370
BstC8I	GCNNGC	3 cut(s)	87, 639, 675
BstDEI	CTNAG	4 cut(s)	51, 81, 110, 513
BstDSI	CCRYGG	1 cut(s)	785
BstF5I	GGATG	2 cut(s)	717, 721
BstKTI	GATC	4 cut(s)	66, 317, 324, 631
BstMAI	GTCTC	3 cut(s)	21, 536, 690
BstMBI	GATC	4 cut(s)	63, 314, 321, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 245, 292
BstNI	CCWGG	2 cut(s)	430, 693
BstNSI	RCATGY	2 cut(s)	78, 356
BstSCI	CCNGG	4 cut(s)	279, 428, 534, 691
BstSFI	CTRYAG	3 cut(s)	87, 243, 549
BstV1I	GCAGC	8 cut(s)	24, 58, 229, 251, 257, 346, 598, 646
BstV2I	GAAGAC	1 cut(s)	449
BstZ17I	GTATAC	1 cut(s)	738
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	49
BsuTUI	ATCGAT	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	785
BtsCI	GGATG	2 cut(s)	717, 721
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	183, 214
Cac8I	GCNNGC	3 cut(s)	87, 639, 675
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	55, 92, 117
CviAII	CATG	6 cut(s)	75, 127, 353, 460, 466, 786
CviQI	GTAC	3 cut(s)	55, 92, 117
DdeI	CTNAG	4 cut(s)	51, 81, 110, 513
DpnI	GATC	4 cut(s)	65, 316, 323, 630
DpnII	GATC	4 cut(s)	63, 314, 321, 628
DraI	TTTAAA	1 cut(s)	799
DraIII	CACNNNGTG	1 cut(s)	452
Eam1104I	CTCTTC	2 cut(s)	297, 624
EarI	CTCTTC	2 cut(s)	297, 624
EciI	GGCGGA	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	785
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	658
EcoRII	CCWGG	2 cut(s)	428, 691
EcoT14I	CCWWGG	1 cut(s)	785
EcoT22I	ATGCAT	2 cut(s)	297, 471
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	6 cut(s)	78, 130, 356, 463, 469, 789
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	6 cut(s)	74, 126, 352, 459, 465, 785
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	8 cut(s)	13, 72, 240, 243, 246, 360, 587, 635
FokI	GGATG	2 cut(s)	724, 728
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	8 cut(s)	13, 72, 240, 243, 246, 360, 587, 635
GluI	GCNGC	8 cut(s)	13, 72, 240, 243, 246, 360, 587, 635
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	3 cut(s)	236, 281, 535
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	6 cut(s)	78, 130, 356, 463, 469, 789
HindIII	AAGCTT	2 cut(s)	107, 610
HinfI	GANTC	3 cut(s)	271, 479, 545
HpaII	CCGG	3 cut(s)	236, 281, 535
Hpy166II	GTNNAC	2 cut(s)	455, 738
Hpy188I	TCNGA	4 cut(s)	168, 350, 417, 478
Hpy188III	TCNNGA	6 cut(s)	61, 264, 299, 325, 731, 763
Hpy8I	GTNNAC	2 cut(s)	455, 738
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	7 cut(s)	74, 89, 245, 295, 362, 469, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 245, 292
HpyF3I	CTNAG	4 cut(s)	51, 81, 110, 513
HpySE526I	ACGT	1 cut(s)	182
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	6 cut(s)	78, 130, 356, 463, 469, 789
Kzo9I	GATC	4 cut(s)	63, 314, 321, 628
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	4 cut(s)	253, 283, 554, 771
Lsp1109I	GCAGC	8 cut(s)	24, 58, 229, 251, 257, 346, 598, 646
LweI	GCATC	2 cut(s)	304, 478
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	144, 178
MalI	GATC	4 cut(s)	65, 316, 323, 630
MboI	GATC	4 cut(s)	63, 314, 321, 628
MboII	GAAGA	4 cut(s)	314, 454, 557, 611
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	3 cut(s)	522, 726, 793
MlyI	GAGTC	2 cut(s)	265, 473
MmeI	TCCRAC	3 cut(s)	147, 299, 373
MnlI	CCTC	9 cut(s)	90, 261, 264, 375, 429, 654, 759, 792, 819
Mph1103I	ATGCAT	2 cut(s)	297, 471
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	2 cut(s)	798, 820
MslI	CAYNNNNRTG	2 cut(s)	207, 464
MspA1I	CMGCKG	2 cut(s)	15, 242
MspI	CCGG	3 cut(s)	236, 281, 535
MspR9I	CCNGG	4 cut(s)	281, 430, 536, 693
MvaI	CCWGG	2 cut(s)	430, 693
MwoI	GCNNNNNNNGC	3 cut(s)	204, 245, 292
NciI	CCSGG	2 cut(s)	281, 536
NcoI	CCATGG	1 cut(s)	785
NdeII	GATC	4 cut(s)	63, 314, 321, 628
NlaIII	CATG	6 cut(s)	78, 130, 356, 463, 469, 789
NlaIV	GGNNCC	2 cut(s)	174, 690
NmeAIII	GCCGAG	2 cut(s)	25, 449
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	2 cut(s)	297, 471
NspI	RCATGY	2 cut(s)	78, 356
NspV	TTCGAA	1 cut(s)	370
PciI	ACATGT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	8 cut(s)	14, 73, 241, 244, 247, 361, 588, 636
PleI	GAGTC	2 cut(s)	265, 473
PpsI	GAGTC	2 cut(s)	265, 473
PscI	ACATGT	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	428, 691
PspGI	CCWGG	2 cut(s)	428, 691
PspN4I	GGNNCC	2 cut(s)	174, 690
PstI	CTGCAG	3 cut(s)	91, 247, 553
PstNI	CAGNNNCTG	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	56, 93, 118
RsaNI	GTAC	3 cut(s)	55, 92, 117
RseI	CAYNNNNRTG	2 cut(s)	207, 464
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	798, 820
SatI	GCNGC	8 cut(s)	13, 72, 240, 243, 246, 360, 587, 635
Sau3AI	GATC	4 cut(s)	63, 314, 321, 628
ScaI	AGTACT	2 cut(s)	56, 93
SchI	GAGTC	2 cut(s)	265, 473
ScrFI	CCNGG	4 cut(s)	281, 430, 536, 693
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	304, 478
SfcI	CTRYAG	3 cut(s)	87, 243, 549
SfuI	TTCGAA	1 cut(s)	370
SmiMI	CAYNNNNRTG	2 cut(s)	207, 464
Sse9I	AATT	3 cut(s)	522, 726, 793
SsiI	CCGC	3 cut(s)	15, 421, 677
StyD4I	CCNGG	4 cut(s)	279, 428, 534, 691
StyI	CCWWGG	1 cut(s)	785
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	6 cut(s)	62, 185, 256, 313, 370, 598
TasI	AATT	3 cut(s)	522, 726, 793
TatI	WGTACW	3 cut(s)	54, 91, 116
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	2 cut(s)	798, 820
Tru9I	TTAA	2 cut(s)	798, 820
TscAI	CASTG	2 cut(s)	183, 214
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	8 cut(s)	12, 71, 239, 242, 245, 359, 586, 634
Tsp45I	GTSAC	1 cut(s)	178
TspRI	CASTG	2 cut(s)	183, 214
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	726, 793
XceI	RCATGY	2 cut(s)	78, 356
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	401
ZraI	GACGTC	1 cut(s)	183
ZrmI	AGTACT	2 cut(s)	56, 93
Zsp2I	ATGCAT	2 cut(s)	297, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.