Rh6CG266000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
43924606 .. 43932881
8276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG266000.1

Sequence Viewer

Length: 318 bp
ATGTCCATGTATCAGTCTGATTCTAAACAACAACAACAAACTTTGACTAACAACACAATTAGCAGTCTCCGGGACAAAGATTCTGCAGGAGTTGACTTTGTTCGTTGTTTTGAAGTTGAGCAGCAGAATAGGCGGACACTACCAAGCTTCACTCTTCTTACCGATCAGGAAATATCTTCAGTACTGCAAGAGAGGATGATGAGCATGGTGAAAAGCAATTCCTCTGGGCTTCTTATGGAACATACCGATTCACCAAGACTGGCCTCAAACACAAACGTTGAAACAAATCCTGTACAGTTGAAACTTGAAGAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.89

Weight (kDa)

4.86

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 133
AclI AACGTT 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 183, 294
AgsI TTSAA 4 cut(s) 113, 281, 301, 308
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 220, 243
BbvI GCAGC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 263
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 292
BsrI ACTGG 1 cut(s) 264
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 2 cut(s) 159, 303
BstAUI TGTACA 1 cut(s) 292
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 201
Csp6I GTAC 2 cut(s) 182, 293
CviAII CATG 2 cut(s) 7, 205
CviJI RGCY 3 cut(s) 147, 229, 263
CviKI_1 RGCY 3 cut(s) 147, 229, 263
CviQI GTAC 2 cut(s) 182, 293
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 159, 303
EarI CTCTTC 2 cut(s) 159, 303
EciI GGCGGA 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 162
FaeI CATG 2 cut(s) 10, 208
FaiI YATR 4 cut(s) 8, 206, 236, 243
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 6, 204
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 70
Hin1II CATG 2 cut(s) 10, 208
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 3 cut(s) 20, 80, 248
HpaII CCGG 1 cut(s) 70
HphI GGTGA 2 cut(s) 220, 243
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 86, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 10, 208
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 72, 83, 152, 210, 245, 303
Lsp1109I GCAGC 1 cut(s) 133
MaeII ACGT 1 cut(s) 276
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 146, 168
MluCI AATT 2 cut(s) 57, 217
MnlI CCTC 4 cut(s) 186, 232, 274, 304
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 71
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 10, 208
PfeI GAWTC 3 cut(s) 20, 80, 248
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 1 cut(s) 123
Psp1406I AACGTT 1 cut(s) 276
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 2 cut(s) 183, 294
RsaNI GTAC 2 cut(s) 182, 293
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 71
SetI ASST 2 cut(s) 149, 279
SfcI CTRYAG 1 cut(s) 84
Sse9I AATT 2 cut(s) 57, 217
SsiI CCGC 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 1 cut(s) 279
TasI AATT 2 cut(s) 57, 217
TatI WGTACW 2 cut(s) 181, 292
TfiI GAWTC 3 cut(s) 20, 80, 248
TseI GCWGC 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.