Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

31244069 .. 31245490

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAGTGTAGCACCGGTGGTTGTACAGACCCTAACATACACTCTACTTCCAACACGACGCAAAACCCTGTGTTACCGTGCAACCACCACCATCATCAGACGGTTCGAGTGACATCGTCTCAGCCAAGCAGAAGCAGCCGTGGTTGTTTTTATATTGATAAAAAACCGGCAGCTGCAGCTCCTTCGCGAGGTTCCCGATGGAATCCAACCCCGGAACAACTAATGACACTGGAAGAGCTGTATCGATCTGGCTTAAAGACACCGACGGCCCAACAAATCCGACAGGTGACTTCGCAGCTTCGAAACTTTGGGAGGATTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCACCGAGCCAGGGAGAGGCAGAAGAGACGCCGTCAACTGATGTCCATGTATCAGTCTGACTCCAAACAACAACAACAAACTTTGACTAACAACACAATTAGCGGTCTCCAAGACAAAGAATCTGCAGGAGGACTAACAAACTCAAGTCTCGAAGTTGAGCAGCAGATTAAGTGGAAATTACCAAACTGCACTGTTCGTTCTGATCAGGAATCATCTTCAGTACTGCAAGAGAGGATGATGAGCATGGTGCAAAGCACTTCCTCCAGGCAACTAGTGGAACAATCGAATTCACCTAGACCGACCTCAGACACAAACGCGTCAGCTACATTAAGTTACACAAAGCTCTTGGACTTTCATCACTATTATGATTATGATTGCGGTATGGTATTGTCTGCACCCATTATTTGCAAAGGAGAAGAAGAAGAAGAAGAAGAAAGTAGAGAAACTCAAACTCTGGAGCTCTTTCCACTCAAGAGCGACAATGTTAAGGGTGCTAATAGGGAGACCAAATTATCTATAAGCAGAACCACAAGCACAGACACTACTGCAAATTTCATGGCAGATAGTATTATCAATTTCTTTGAAGAATTTAAGGCAGCATATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

320

Amino Acids

36.25

Weight (kDa)

7.63

Isoelectric Point (pI)

70.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	63 - 124	2.2e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	187, 668
AciI	CCGC	2 cut(s)	453, 729
AcsI	RAATTY	3 cut(s)	637, 901, 938
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	379
AfaI	GTAC	2 cut(s)	25, 573
AfiI	CCNNNNNNNGG	3 cut(s)	188, 361, 366
AflIII	ACRYGT	1 cut(s)	666
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	320, 935
AhlI	ACTAGT	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	359, 614
AluBI	AGCT	7 cut(s)	173, 179, 238, 298, 674, 694, 811
AluI	AGCT	7 cut(s)	173, 179, 238, 298, 674, 694, 811
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	5 cut(s)	123, 370, 461, 503, 848
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	7 cut(s)	135, 170, 173, 176, 295, 511, 947
ApoI	RAATTY	3 cut(s)	637, 901, 938
AsiGI	ACCGGT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	298, 633
AsuII	TTCGAA	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	6 cut(s)	147, 160, 182, 188, 307, 523
BccI	CCATC	2 cut(s)	99, 192
BceAI	ACGGC	3 cut(s)	123, 282, 366
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	2 cut(s)	361, 616
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	5 cut(s)	123, 370, 461, 503, 848
BcuI	ACTAGT	1 cut(s)	622
BfaI	CTAG	3 cut(s)	623, 645, 958
BfmI	CTRYAG	2 cut(s)	174, 474
BisI	GCNGC	7 cut(s)	136, 171, 174, 177, 296, 512, 948
BlsI	GCNGC	7 cut(s)	137, 172, 175, 178, 297, 513, 949
BmcAI	AGTACT	1 cut(s)	573
Bme1390I	CCNGG	3 cut(s)	212, 361, 616
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	3 cut(s)	212, 361, 616
BpmI	CTGGAG	2 cut(s)	598, 827
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	2 cut(s)	478, 806
BpuMI	CCSGG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	379
BsaI	GGTCTC	2 cut(s)	461, 848
BsaJI	CCNNGG	3 cut(s)	139, 210, 360
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 361, 366
Bse118I	RCCGGY	2 cut(s)	14, 166
Bse1I	ACTGG	2 cut(s)	234, 344
BseBI	CCWGG	2 cut(s)	361, 616
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	3 cut(s)	139, 210, 360
BseGI	GGATG	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	188, 361, 366
BseMII	CTCAG	2 cut(s)	134, 669
BseNI	ACTGG	2 cut(s)	234, 344
BseXI	GCAGC	6 cut(s)	147, 160, 182, 188, 307, 523
BsgI	GTGCAG	2 cut(s)	523, 729
Bsh1236I	CGCG	2 cut(s)	187, 668
BshFI	GGCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	813
BsiSI	CCGG	3 cut(s)	15, 167, 212
BslI	CCNNNNNNNGG	3 cut(s)	188, 361, 366
BsmAI	GTCTC	5 cut(s)	123, 370, 461, 503, 848
BsmBI	CGTCTC	2 cut(s)	123, 370
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	2 cut(s)	461, 848
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	245, 553
Bsp68I	TCGCGA	1 cut(s)	187
BspACI	CCGC	2 cut(s)	453, 729
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	133, 668
BspDI	ATCGAT	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	187, 668
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	2 cut(s)	178, 478
BspQI	GCTCTTC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	301
BspTNI	GGTCTC	2 cut(s)	461, 848
BsrFI	RCCGGY	2 cut(s)	14, 166
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	234, 344
BssAI	RCCGGY	2 cut(s)	14, 166
BssECI	CCNNGG	3 cut(s)	139, 210, 360
BssMI	GATC	2 cut(s)	245, 553
BssNI	GRCGYC	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	361, 616
Bst4CI	ACNGT	3 cut(s)	78, 103, 544
Bst6I	CTCTTC	2 cut(s)	228, 368
BstACI	GRCGYC	1 cut(s)	379
BstAUI	TGTACA	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	120, 655
BstDSI	CCRYGG	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	591
BstFNI	CGCG	2 cut(s)	187, 668
BstKTI	GATC	2 cut(s)	248, 556
BstMAI	GTCTC	5 cut(s)	123, 370, 461, 503, 848
BstMBI	GATC	2 cut(s)	245, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 176
BstNI	CCWGG	2 cut(s)	361, 616
BstSCI	CCNGG	3 cut(s)	210, 359, 614
BstSFI	CTRYAG	2 cut(s)	174, 474
BstUI	CGCG	2 cut(s)	187, 668
BstV1I	GCAGC	6 cut(s)	147, 160, 182, 188, 307, 523
Bsu15I	ATCGAT	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	269
BsuTUI	ATCGAT	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	227, 540
BtuMI	TCGCGA	1 cut(s)	187
Cfr10I	RCCGGY	2 cut(s)	14, 166
Cfr13I	GGNCC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	244
CseI	GACGC	3 cut(s)	67, 387, 657
Csp6I	GTAC	2 cut(s)	24, 572
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	3 cut(s)	397, 595, 907
CviQI	GTAC	2 cut(s)	24, 572
DdeI	CTNAG	2 cut(s)	120, 655
DpnI	GATC	2 cut(s)	247, 555
DpnII	GATC	2 cut(s)	245, 553
Eam1104I	CTCTTC	2 cut(s)	228, 368
EarI	CTCTTC	2 cut(s)	228, 368
Ecl136II	GAGCTC	1 cut(s)	811
Eco24I	GRGCYC	1 cut(s)	813
Eco31I	GGTCTC	2 cut(s)	461, 848
Eco53kI	GAGCTC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	811
EcoNI	CCTNNNNNAGG	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	359, 614
EcoT38I	GRGCYC	1 cut(s)	813
Esp3I	CGTCTC	2 cut(s)	123, 370
FaeI	CATG	3 cut(s)	400, 598, 910
FatI	CATG	3 cut(s)	396, 594, 906
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	7 cut(s)	136, 171, 174, 177, 296, 512, 948
FokI	GGATG	1 cut(s)	598
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	7 cut(s)	136, 171, 174, 177, 296, 512, 948
FspBI	CTAG	3 cut(s)	623, 645, 958
GluI	GCNGC	7 cut(s)	136, 171, 174, 177, 296, 512, 948
GsuI	CTGGAG	2 cut(s)	598, 827
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	3 cut(s)	15, 167, 212
HgaI	GACGC	3 cut(s)	67, 387, 657
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	400, 598, 910
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	4 cut(s)	202, 410, 470, 560
HpaII	CCGG	3 cut(s)	15, 167, 212
HphI	GGTGA	2 cut(s)	298, 633
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	6 cut(s)	99, 281, 348, 409, 553, 658
Hpy188III	TCNNGA	6 cut(s)	186, 195, 500, 557, 806, 823
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	2 cut(s)	61, 268
HpyAV	CCTTC	2 cut(s)	192, 314
HpyCH4III	ACNGT	3 cut(s)	78, 103, 544
HpyCH4V	TGCA	9 cut(s)	81, 176, 476, 540, 577, 601, 746, 759, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 176
HpyF3I	CTNAG	2 cut(s)	120, 655
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	400, 598, 910
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	245, 553
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	184, 808
Lsp1109I	GCAGC	6 cut(s)	147, 160, 182, 188, 307, 523
MaeI	CTAG	3 cut(s)	623, 645, 958
MaeIII	GTNAC	4 cut(s)	72, 109, 286, 683
MalI	GATC	2 cut(s)	247, 555
MboI	GATC	2 cut(s)	245, 553
MhlI	GDGCHC	1 cut(s)	813
MluCI	AATT	7 cut(s)	447, 527, 637, 860, 901, 925, 938
MluI	ACGCGT	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	3 cut(s)	75, 230, 304
MnlI	CCTC	7 cut(s)	182, 306, 360, 473, 576, 622, 664
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	5 cut(s)	254, 519, 680, 837, 942
MslI	CAYNNNNRTG	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	15, 167, 212
MspR9I	CCNGG	3 cut(s)	212, 361, 616
MvaI	CCWGG	2 cut(s)	361, 616
MvnI	CGCG	2 cut(s)	187, 668
MwoI	GCNNNNNNNGC	2 cut(s)	135, 176
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	245, 553
NlaIII	CATG	3 cut(s)	400, 598, 910
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	109, 286
NruI	TCGCGA	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	202, 470, 560
PflFI	GACNNNGTC	2 cut(s)	115, 381
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	7 cut(s)	137, 172, 175, 178, 297, 513, 949
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	813
Psp6I	CCWGG	2 cut(s)	359, 614
PspGI	CCWGG	2 cut(s)	359, 614
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	2 cut(s)	178, 478
PsyI	GACNNNGTC	2 cut(s)	115, 381
PvuII	CAGCTG	1 cut(s)	173
RruI	TCGCGA	1 cut(s)	187
RsaI	GTAC	2 cut(s)	25, 573
RsaNI	GTAC	2 cut(s)	24, 572
RseI	CAYNNNNRTG	1 cut(s)	714
SacI	GAGCTC	1 cut(s)	813
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	5 cut(s)	254, 519, 680, 837, 942
SatI	GCNGC	7 cut(s)	136, 171, 174, 177, 296, 512, 948
Sau3AI	GATC	2 cut(s)	245, 553
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	573
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	3 cut(s)	212, 361, 616
SduI	GDGCHC	1 cut(s)	813
SfcI	CTRYAG	2 cut(s)	174, 474
SfuI	TTCGAA	1 cut(s)	301
SgrAI	CRCCGGYG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	493, 821
SmoI	CTYRAG	2 cut(s)	493, 821
SpeI	ACTAGT	1 cut(s)	622
Sse9I	AATT	7 cut(s)	447, 527, 637, 860, 901, 925, 938
SsiI	CCGC	2 cut(s)	453, 729
SspMI	CTAG	3 cut(s)	623, 645, 958
SstI	GAGCTC	1 cut(s)	813
StyD4I	CCNGG	3 cut(s)	210, 359, 614
TaaI	ACNGT	3 cut(s)	78, 103, 544
TaqI	TCGA	5 cut(s)	106, 244, 301, 501, 635
TaqII	GACCGA	1 cut(s)	664
TasI	AATT	7 cut(s)	447, 527, 637, 860, 901, 925, 938
TatI	WGTACW	2 cut(s)	23, 571
TfiI	GAWTC	3 cut(s)	202, 470, 560
Tru1I	TTAA	5 cut(s)	254, 519, 680, 837, 942
Tru9I	TTAA	5 cut(s)	254, 519, 680, 837, 942
TscAI	CASTG	2 cut(s)	234, 547
TseFI	GTSAC	2 cut(s)	109, 286
TseI	GCWGC	7 cut(s)	135, 170, 173, 176, 295, 511, 947
Tsp45I	GTSAC	2 cut(s)	109, 286
TspDTI	ATGAA	2 cut(s)	695, 895
TspRI	CASTG	2 cut(s)	234, 547
Tth111I	GACNNNGTC	2 cut(s)	115, 381
XagI	CCTNNNNNAGG	1 cut(s)	186
XapI	RAATTY	3 cut(s)	637, 901, 938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	3 cut(s)	623, 645, 958
ZrmI	AGTACT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.